Experiment set7IT010 for Pseudomonas syringae pv. syringae B728a

Compare to:

L-Proline carbon source

200 most detrimental genes:

  gene name fitness t score description  
Psyr_0529 +3.7 13.0 Glycosyl transferase, group 1 compare
Psyr_0531 +2.6 3.0 LmbE-like protein compare
Psyr_3698 +2.2 6.8 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_0532 +1.9 6.6 conserved hypothetical protein compare
Psyr_2897 +1.9 7.9 regulatory protein, LuxR:Response regulator receiver compare
Psyr_4730 +1.8 2.4 FecR protein compare
Psyr_4490 +1.5 2.5 transcriptional regulator, DeoR family compare
Psyr_3473 +1.5 3.6 Flagellar P-ring protein compare
Psyr_1373 +1.5 3.4 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_2067 +1.4 2.2 ABC transporter compare
Psyr_1830 +1.4 5.0 ABC transporter, transmembrane region:ABC transporter compare
Psyr_0267 +1.4 6.9 Endonuclease/exonuclease/phosphatase compare
Psyr_0826 +1.4 6.1 glucose-6-phosphate isomerase compare
Psyr_3567 +1.3 2.0 L-arginine ABC transporter ATP-binding protein / L-ornithine ABC transporter ATP-binding protein compare
Psyr_2695 +1.3 2.7 conserved hypothetical protein compare
Psyr_2285 +1.3 1.9 Twin-arginine translocation pathway signal compare
Psyr_4115 +1.2 2.5 phosphoheptose isomerase compare
Psyr_2980 +1.2 2.5 UDP-glucose pyrophosphorylase compare
Psyr_1008 +1.2 3.2 conserved hypothetical protein compare
Psyr_3555 +1.2 1.8 aspartate kinase compare
Psyr_4476 +1.1 5.5 dTDP-4-dehydrorhamnose reductase compare
Psyr_0487 +1.1 2.6 glutathione synthase compare
Psyr_1833 +1.1 7.0 amino acid ABC transporter substrate-binding protein, PAAT family compare
Psyr_3896 +1.1 2.3 BFD-like [2Fe-2S]-binding region compare
Psyr_0845 +1.1 1.6 conserved hypothetical protein compare
Psyr_2605 +1.1 3.6 transposase, putative compare
Psyr_0858 +1.0 2.3 conserved hypothetical protein compare
Psyr_0406 +1.0 3.0 Pilus assembly protein, PilQ compare
Psyr_2752 +1.0 1.7 conserved hypothetical protein compare
Psyr_2247 +1.0 3.2 ABC transporter compare
Psyr_4336 +1.0 2.1 ribosomal large subunit pseudouridine synthase E compare
Psyr_2733 +1.0 2.1 Short-chain dehydrogenase/reductase SDR compare
Psyr_3616 +1.0 5.7 Heat shock protein, Metallo peptidase, MEROPS family M48B compare
Psyr_1911 +1.0 1.8 conserved hypothetical protein compare
Psyr_4068 +1.0 3.0 conserved hypothetical protein compare
Psyr_3701 +0.9 2.0 thioredoxin, putative compare
Psyr_4808 +0.9 1.3 conserved hypothetical protein compare
Psyr_2253 +0.9 2.1 Phosphonate metabolism compare
Psyr_2521 +0.9 2.2 conserved hypothetical protein compare
Psyr_3947 +0.9 1.3 Methyltransferase, putative compare
Psyr_2255 +0.9 1.5 ABC transporter compare
Psyr_2783 +0.9 3.5 conserved hypothetical protein compare
Psyr_0372 +0.9 1.8 CDS compare
Psyr_4118 +0.9 4.4 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_2211 +0.9 1.7 monooxygenase, NtaA/SnaA/SoxA family compare
Psyr_2588 +0.9 1.9 HpcH/HpaI aldolase compare
Psyr_3039 +0.9 1.9 protein of unknown function DUF883 compare
Psyr_1418 +0.9 1.5 Radical SAM compare
Psyr_2936 +0.9 3.1 conserved hypothetical protein compare
Psyr_4316 +0.9 2.4 conserved hypothetical protein compare
Psyr_2829 +0.9 1.8 conserved hypothetical protein compare
Psyr_0261 +0.9 1.7 conserved hypothetical protein compare
Psyr_1187 +0.8 2.0 type III chaperone protein ShcE compare
Psyr_1888 +0.8 3.1 CDS compare
Psyr_1483 +0.8 2.9 hypothetical protein compare
Psyr_1722 +0.8 2.8 Amidohydrolase 2 compare
Psyr_3262 +0.8 1.3 dnaK suppressor protein, putative compare
Psyr_4454 +0.8 1.7 HupE/UreJ protein compare
Psyr_1460 +0.8 2.8 hypothetical protein compare
Psyr_3882 +0.8 1.3 conserved hypothetical protein compare
Psyr_2481 +0.8 2.4 thiol peroxidase (atypical 2-Cys peroxiredoxin) compare
Psyr_2641 +0.8 1.9 hypothetical protein compare
Psyr_2021 +0.8 5.1 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_3622 +0.8 4.0 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase compare
Psyr_0184 +0.8 1.9 Protein of unknown function DUF484 compare
Psyr_0405 +0.8 2.5 Pilus assembly protein, PilO compare
Psyr_3886 +0.8 1.6 methionyl-tRNA synthetase compare
Psyr_0376 +0.8 2.6 D-tyrosyl-tRNA(Tyr) deacylase compare
Psyr_2844 +0.8 2.3 hypothetical protein compare
Psyr_1515 +0.8 3.0 hypothetical protein compare
Psyr_1811 +0.8 1.1 transcriptional regulator, GntR family compare
Psyr_1419 +0.8 1.6 preQ(0) biosynthesis protein QueC compare
Psyr_3523 +0.8 3.7 Peptidase M20D, amidohydrolase compare
Psyr_4789 +0.8 2.2 lipoprotein, putative compare
Psyr_1868 +0.7 3.1 hypothetical protein compare
Psyr_2330 +0.7 2.1 FAD dependent oxidoreductase compare
Psyr_2348 +0.7 2.1 hypothetical protein compare
Psyr_5067 +0.7 3.8 conserved hypothetical protein compare
Psyr_4860 +0.7 0.7 Integrase, catalytic region compare
Psyr_2602 +0.7 3.8 transcriptional regulator, LuxR family compare
Psyr_2871 +0.7 3.0 CDS compare
Psyr_2062 +0.7 1.7 DoxD-like family protein compare
Psyr_4450 +0.7 2.0 transcriptional regulator, TetR family compare
Psyr_3432 +0.7 1.4 MotA/TolQ/ExbB proton channel compare
Psyr_3844 +0.7 2.0 conserved hypothetical protein compare
Psyr_2545 +0.7 2.6 Metallophosphoesterase compare
Psyr_3558 +0.7 1.2 6,7-dimethyl-8-ribityllumazine synthase compare
Psyr_0070 +0.7 0.9 hypothetical protein compare
Psyr_2409 +0.7 1.5 Protein of unknown function DUF1185 compare
Psyr_0179 +0.7 2.1 Protein of unknown function DUF1289 compare
Psyr_2118 +0.7 1.2 protein of unknown function DUF883 compare
Psyr_2069 +0.7 1.6 conserved hypothetical protein compare
Psyr_2030 +0.7 0.7 Calcium-binding EF-hand compare
Psyr_4989 +0.7 1.4 hypothetical protein compare
Psyr_1887 +0.7 1.5 CDS compare
Psyr_3022 +0.7 1.5 transcriptional regulator, AsnC family compare
Psyr_4419 +0.7 2.5 Cobalamin (vitamin B12) biosynthesis CbiD protein compare
Psyr_3803 +0.7 3.5 MscS Mechanosensitive ion channel compare
Psyr_0410 +0.7 4.0 conserved hypothetical protein compare
Psyr_3637 +0.7 4.4 Glycosyl transferase, family 4 compare
Psyr_2860 +0.7 1.4 hypothetical protein compare
Psyr_1277 +0.7 0.7 formate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_1085 +0.7 1.7 23S rRNA m(6)A-1618 methyltransferase compare
Psyr_2140 +0.7 1.5 conserved hypothetical protein compare
Psyr_1317 +0.7 1.1 conserved hypothetical protein compare
Psyr_4618 +0.7 1.7 regulatory protein, LuxR:Response regulator receiver compare
Psyr_0694 +0.7 1.6 ABC transporter compare
Psyr_2151 +0.7 0.9 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
Psyr_3458 +0.7 0.9 Flagellar hook-basal body complex protein FliE compare
Psyr_0954 +0.7 1.2 Protein of unknown function UPF0153 compare
Psyr_1859 +0.7 1.8 conserved hypothetical protein compare
Psyr_4075 +0.7 2.3 Short-chain dehydrogenase/reductase SDR compare
Psyr_2378 +0.7 1.6 transcriptional regulator, TetR family compare
Psyr_0435 +0.7 0.7 membrane protein, putative compare
Psyr_2527 +0.7 2.5 GCN5-related N-acetyltransferase compare
Psyr_2528 +0.7 2.3 Polysaccharide deacetylase compare
Psyr_3312 +0.7 2.4 transcriptional regulator, LysR family compare
Psyr_4928 +0.6 1.9 conserved hypothetical protein compare
Psyr_0213 +0.6 3.7 RNAse PH compare
Psyr_1468 +0.6 2.6 hypothetical protein compare
Psyr_1791 +0.6 1.6 HAD-superfamily hydrolase, subfamily IA, variant 2 compare
Psyr_0626 +0.6 3.8 DedA compare
Psyr_0817 +0.6 1.5 N-acetylmuramoyl-L-alanine amidase, family 2 compare
Psyr_1820 +0.6 2.7 conserved hypothetical protein compare
Psyr_3620 +0.6 1.2 hypothetical protein compare
Psyr_2070 +0.6 4.4 ErfK/YbiS/YcfS/YnhG compare
Psyr_1487 +0.6 1.4 conserved hypothetical protein compare
Psyr_0818 +0.6 1.8 ampE protein compare
Psyr_3741 +0.6 1.9 Polyphosphate:AMP phosphotransferase compare
Psyr_3342 +0.6 1.5 conserved hypothetical protein compare
Psyr_3753 +0.6 3.1 Short-chain dehydrogenase/reductase SDR compare
Psyr_5023 +0.6 2.7 conserved hypothetical protein compare
Psyr_1746 +0.6 2.1 Trigger factor compare
Psyr_3787 +0.6 1.4 conserved hypothetical protein compare
Psyr_0731 +0.6 2.1 CDS compare
Psyr_3627 +0.6 1.1 OsmC-like protein compare
Psyr_4821 +0.6 2.6 PAS/PAC sensor signal transduction histidine kinase compare
Psyr_2327 +0.6 1.4 GTP cyclohydrolase subunit MoaA compare
Psyr_0447 +0.6 1.1 malonate decarboxylase subunit, putative compare
Psyr_0715 +0.6 3.0 pillin, putative compare
Psyr_3837 +0.6 1.2 conserved hypothetical protein compare
Psyr_1069 +0.6 1.6 molybdopterin synthase subunit MoaE compare
Psyr_0321 +0.6 3.9 aminopeptidase P, Metallo peptidase, MEROPS family M24B compare
Psyr_3007 +0.6 0.9 Protein of unknown function DUF1294 compare
Psyr_3967 +0.6 2.2 membrane protein TctB, putative compare
Psyr_0320 +0.6 2.4 Protein of unknown function UPF0149 compare
Psyr_4071 +0.6 2.4 Phosphoesterase, PA-phosphatase related protein compare
Psyr_2155 +0.6 1.3 Carbohydrate kinase, PfkB compare
Psyr_5078 +0.6 1.0 conserved hypothetical protein compare
Psyr_3707 +0.6 2.7 Sodium:dicarboxylate symporter compare
Psyr_3752 +0.6 3.1 Protein of unknown function UPF0060 compare
Psyr_0791 +0.6 1.0 MOSC compare
Psyr_0145 +0.6 1.8 conserved hypothetical protein compare
Psyr_3712 +0.6 2.4 conserved hypothetical protein compare
Psyr_1813 +0.6 3.0 molybdenum cofactor sulfurylase compare
Psyr_3601 +0.6 1.0 conserved hypothetical protein compare
Psyr_3665 +0.6 1.6 conserved hypothetical protein compare
Psyr_1844 +0.6 1.6 conserved hypothetical protein compare
Psyr_4361 +0.6 1.3 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_2415 +0.6 1.9 hypothetical protein compare
Psyr_3324 +0.6 1.9 transcriptional regulator, TetR family compare
Psyr_1671 +0.6 2.5 lipoprotein, putative compare
Psyr_3466 +0.6 1.1 Flagellin, C-terminal:Flagellin, N-terminal compare
Psyr_2072 +0.6 3.3 conserved hypothetical protein compare
Psyr_1629 +0.6 1.8 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_1691 +0.6 2.1 hypothetical protein compare
Psyr_4001 +0.6 1.6 conserved domain protein compare
Psyr_3397 +0.6 2.1 transcriptional regulator, LysR family compare
Psyr_1556 +0.6 1.3 hypothetical protein compare
Psyr_3626 +0.6 1.9 transcriptional regulator, MarR family compare
Psyr_2341 +0.5 1.9 conserved hypothetical protein compare
Psyr_1499 +0.5 1.3 Protein of unknown function DUF compare
Psyr_3425 +0.5 1.6 Cyclic nucleotide-binding:Bacterial regulatory protein, Crp compare
Psyr_4274 +0.5 2.4 conserved hypothetical protein compare
Psyr_3552 +0.5 1.2 Divalent cation transporter compare
Psyr_4169 +0.5 1.5 4-carboxymuconolactone decarboxylase compare
Psyr_2428 +0.5 2.0 GCN5-related N-acetyltransferase compare
Psyr_3121 +0.5 1.0 Protein of unknown function DUF1345 compare
Psyr_4403 +0.5 1.7 conserved hypothetical protein compare
Psyr_4431 +0.5 1.9 Urease accessory protein UreD compare
Psyr_4496 +0.5 3.1 outer membrane transport energization protein TonB compare
Psyr_3807 +0.5 2.4 hypothetical protein compare
Psyr_4480 +0.5 1.0 outer membrane transport energization protein TonB compare
Psyr_4731 +0.5 1.6 Sigma-70 region 2:Sigma-70 region 4 compare
Psyr_3054 +0.5 1.7 Choline/ethanolamine kinase:Aminoglycoside phosphotransferase compare
Psyr_0769 +0.5 1.3 conserved hypothetical membrane-anchored protein compare
Psyr_4309 +0.5 2.1 hypothetical protein compare
Psyr_4673 +0.5 0.8 Coenzyme PQQ synthesis D compare
Psyr_3486 +0.5 2.3 Response regulator receiver:CheW-like protein compare
Psyr_3934 +0.5 0.7 Short-chain dehydrogenase/reductase SDR compare
Psyr_0541 +0.5 1.2 Small multidrug resistance protein compare
Psyr_3411 +0.5 1.9 conserved hypothetical protein compare
Psyr_2175 +0.5 2.5 L-carnitine dehydratase/bile acid-inducible protein F compare
Psyr_4838 +0.5 0.9 transcriptional regulator, MerR family compare
Psyr_1992 +0.5 1.0 Zinc-containing alcohol dehydrogenase superfamily compare
Psyr_2185 +0.5 1.8 Prokaryotic protein of unknown function DUF849 compare
Psyr_3917 +0.5 3.4 transcriptional regulator, LysR family compare
Psyr_2890 +0.5 1.2 amino acid ABC transporter ATP-binding protein, PAAT family compare
Psyr_3792 +0.5 2.0 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_3795 +0.5 1.2 hypothetical protein compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source L-Proline in Pseudomonas syringae pv. syringae B728a

For carbon source L-Proline across organisms