Experiment set7IT010 for Klebsiella michiganensis M5al
LB with Sisomicin sulfate salt 0.008 mg/ml
Group: stressMedia: LB + Sisomicin sulfate salt (0.008 mg/ml)
Culturing: Koxy_ML2, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
By: Adam on 27-Apr-17
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 1802 B2
Specific Phenotypes
For 33 genes in this experiment
For stress Sisomicin sulfate salt in Klebsiella michiganensis M5al
For stress Sisomicin sulfate salt across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Puromycin biosynthesis
- Pyrimidine metabolism
- Nucleotide sugars metabolism
- alpha-Linolenic acid metabolism
- Glyoxylate and dicarboxylate metabolism
- Trinitrotoluene degradation
- Methane metabolism
- Porphyrin and chlorophyll metabolism
- Carotenoid biosynthesis - General
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| bis(guanylyl molybdenum cofactor) biosynthesis | 2 | 2 | 2 |
| guanylyl molybdenum cofactor biosynthesis | 1 | 1 | 1 |
| bis(guanylyl tungstenpterin) cofactor biosynthesis | 1 | 1 | 1 |
| formate oxidation to CO2 | 1 | 1 | 1 |
| pseudouridine degradation | 2 | 2 | 1 |
| molybdenum cofactor biosynthesis | 3 | 3 | 1 |
| queuosine biosynthesis I (de novo) | 4 | 4 | 1 |
| bis(tungstenpterin) cofactor biosynthesis | 4 | 1 | 1 |
| oxalate degradation VI | 4 | 1 | 1 |
| queuosine biosynthesis III (queuosine salvage) | 5 | 3 | 1 |
| oxalate degradation III | 5 | 1 | 1 |
| superpathway of C1 compounds oxidation to CO2 | 12 | 4 | 1 |
| purine nucleobases degradation I (anaerobic) | 15 | 6 | 1 |
| purine nucleobases degradation II (anaerobic) | 24 | 17 | 1 |