Experiment set7IT009 for Pseudomonas syringae pv. syringae B728a

Compare to:

Fumaric acid carbon source

200 most important genes:

  gene name fitness t score description  
Psyr_1984 -5.0 -4.9 3-isopropylmalate dehydratase, small subunit compare
Psyr_1269 -4.6 -3.2 phosphoribosylformylglycinamidine synthase compare
Psyr_1983 -4.4 -6.6 3-isopropylmalate dehydratase, large subunit compare
Psyr_1985 -4.2 -7.0 3-isopropylmalate dehydrogenase compare
Psyr_4896 -4.2 -7.4 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_4609 -4.2 -9.7 anthranilate synthase, component I compare
Psyr_4894 -4.1 -7.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_4580 -4.1 -3.9 anthranilate phosphoribosyltransferase compare
Psyr_4369 -4.1 -4.8 glutamate-5-semialdehyde dehydrogenase compare
Psyr_4133 -4.1 -10.7 histidinol dehydrogenase compare
Psyr_0473 -4.0 -4.8 Methionine biosynthesis MetW compare
Psyr_1669 -4.0 -7.1 O-succinylhomoserine sulfhydrylase compare
Psyr_4844 -4.0 -9.2 HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2 compare
Psyr_0033 -3.9 -2.7 tryptophan synthase, alpha chain compare
Psyr_0412 -3.9 -7.0 glutamate synthase (NADPH) small subunit compare
Psyr_4134 -3.9 -9.0 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_4270 -3.9 -6.9 serine hydroxymethyltransferase compare
Psyr_0917 -3.8 -6.4 ABC-2 compare
Psyr_1663 -3.8 -3.7 phosphoribosylanthranilate isomerase compare
Psyr_0847 -3.8 -6.8 acetolactate synthase, small subunit compare
Psyr_0704 -3.8 -9.0 glutamate 5-kinase compare
Psyr_4581 -3.8 -3.4 anthranilate synthase, component II compare
Psyr_0474 -3.8 -7.2 homoserine O-acetyltransferase compare
Psyr_0411 -3.8 -13.3 glutamate synthase (NADPH) large subunit compare
Psyr_0846 -3.7 -10.1 acetolactate synthase, large subunit compare
Psyr_4340 -3.7 -6.6 phosphomethylpyrimidine kinase, putative compare
Psyr_0469 -3.7 -7.8 dihydroxyacid dehydratase compare
Psyr_1544 -3.7 -3.5 SirA-like protein compare
Psyr_0557 -3.6 -5.9 phosphoserine phosphatase compare
Psyr_4897 -3.6 -4.2 imidazoleglycerol-phosphate dehydratase compare
Psyr_4740 -3.6 -6.3 thiazole-phosphate synthase compare
Psyr_0918 -3.5 -10.2 ABC transporter compare
Psyr_2462 -3.5 -6.7 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_4407 -3.4 -2.3 phosphoribosylamine--glycine ligase compare
Psyr_4132 -3.4 -10.8 histidinol phosphate aminotransferase apoenzyme compare
Psyr_1257 -3.3 -11.1 2-isopropylmalate synthase compare
Psyr_0951 -3.3 -3.1 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_4893 -3.3 -2.0 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_0208 -3.3 -8.0 endoribonuclease L-PSP compare
Psyr_3174 -3.2 -5.2 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_4852 -3.2 -8.4 D-3-phosphoglycerate dehydrogenase compare
Psyr_1542 -3.1 -9.6 quinolinate synthetase compare
Psyr_0034 -3.1 -4.2 tryptophan synthase, beta chain compare
Psyr_0848 -3.0 -8.6 ketol-acid reductoisomerase compare
Psyr_4091 -3.0 -6.4 8-oxo-dGTPase compare
Psyr_4116 -2.9 -2.5 Transport-associated protein compare
Psyr_1668 -2.9 -6.9 amidophosphoribosyltransferase compare
Psyr_2077 -2.8 -6.8 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_0544 -2.8 -11.9 hydroxymethylpyrimidine synthase compare
Psyr_3564 -2.7 -9.5 arginine succinyltransferase compare
Psyr_4128 -2.7 -7.8 sulfate adenylyltransferase subunit 2 compare
Psyr_0383 -2.7 -1.8 Twin-arginine translocation protein TatB compare
Psyr_4898 -2.6 -9.3 aromatic amino acid aminotransferase apoenzyme compare
Psyr_4126 -2.6 -12.3 adenylylsulfate kinase / sulfate adenylyltransferase subunit 1 compare
Psyr_0827 -2.6 -5.1 pantothenate synthetase compare
Psyr_4127 -2.6 -4.1 S23 ribosomal compare
Psyr_3615 -2.5 -11.0 Aminotransferase, class I and II compare
Psyr_0385 -2.5 -3.4 phosphoribosyl-ATP pyrophosphatase compare
Psyr_0576 -2.4 -2.7 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_4418 -2.4 -3.0 Precorrin-6Y C5,15-methyltransferase (decarboxylating) compare
Psyr_0168 -2.3 -8.0 Phosphoenolpyruvate carboxykinase (ATP) compare
Psyr_0815 -2.3 -6.2 nicotinate-nucleotide pyrophosphorylase (carboxylating) compare
Psyr_1373 -2.3 -3.4 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_4341 -2.3 -7.3 thiamine-phosphate diphosphorylase compare
Psyr_3013 -2.3 -3.1 magnesium chelatase subunit ChlD compare
Psyr_2592 -2.3 -6.8 transport system permease protein compare
Psyr_2461 -2.2 -4.1 Uncharacterized conserved protein UCP030820 compare
Psyr_4686 -2.2 -3.6 8-amino-7-oxononanoate synthase compare
Psyr_0386 -2.2 -3.4 phosphoribosyl-AMP cyclohydrolase compare
Psyr_4687 -2.1 -5.4 biotin synthase compare
Psyr_0268 -2.0 -2.8 DSBA oxidoreductase compare
Psyr_5072 -2.0 -1.8 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_3690 -2.0 -5.4 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_0976 -2.0 -4.1 Malate:quinone-oxidoreductase compare
Psyr_3008 -1.9 -6.4 Undecaprenyl-diphosphatase compare
Psyr_4417 -1.9 -1.8 Ferredoxin--nitrite reductase compare
Psyr_0454 -1.9 -4.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_1725 -1.8 -3.4 Protein of unknown function DUF204 compare
Psyr_4895 -1.8 -3.5 conserved hypothetical protein compare
Psyr_2593 -1.8 -4.7 ABC transporter compare
Psyr_2582 -1.8 -9.9 TonB-dependent siderophore receptor compare
Psyr_4887 -1.8 -9.0 Peptidase S41A, C-terminal protease compare
Psyr_1968 -1.8 -3.0 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_4940 -1.7 -2.8 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_1748 -1.7 -5.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_3202 -1.7 -2.9 NADH dehydrogenase subunit G compare
Psyr_2590 -1.6 -3.7 Periplasmic binding protein compare
Psyr_0214 -1.6 -2.0 conserved hypothetical protein compare
Psyr_3707 -1.6 -6.0 Sodium:dicarboxylate symporter conserved
Psyr_4882 -1.6 -6.0 protein translocase subunit secB compare
Psyr_3286 -1.6 -7.7 conserved hypothetical protein compare
Psyr_3563 -1.5 -4.4 arginine succinyltransferase compare
Psyr_0831 -1.5 -2.8 Two-component response regulator CbrB compare
Psyr_1350 -1.5 -3.4 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_1247 -1.5 -2.2 conserved hypothetical protein compare
Psyr_4113 -1.5 -8.2 LppC putative lipoprotein compare
Psyr_4408 -1.4 -5.4 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_3612 -1.4 -6.1 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal compare
Psyr_3450 -1.4 -3.2 Hpt compare
Psyr_3567 -1.4 -1.1 L-arginine ABC transporter ATP-binding protein / L-ornithine ABC transporter ATP-binding protein compare
Psyr_2143 -1.4 -2.1 delta1-piperideine 2-carboxylate reductase compare
Psyr_1251 -1.4 -3.6 quinoprotein compare
Psyr_4362 -1.4 -2.7 Rare lipoprotein A compare
Psyr_1148 -1.4 -4.6 branched chain amino acid aminotransferase apoenzyme compare
Psyr_2464 -1.3 -6.2 methionine synthase (B12-dependent) compare
Psyr_4683 -1.3 -3.1 dethiobiotin synthase compare
Psyr_4464 -1.3 -1.4 lipoprotein, putative compare
Psyr_3723 -1.3 -2.7 CDS compare
Psyr_4991 -1.3 -1.9 hypothetical protein compare
Psyr_3193 -1.3 -2.7 Transcription factor jumonji, jmjC compare
Psyr_0947 -1.2 -5.4 TPR repeat protein:TPR repeat protein compare
Psyr_4136 -1.2 -1.8 BolA-like protein compare
Psyr_4089 -1.2 -4.5 PAS compare
Psyr_0919 -1.2 -7.9 Chromosome segregation ATPase-like protein compare
Psyr_3561 -1.2 -5.6 succinylarginine dihydrolase compare
Psyr_0721 -1.2 -4.9 glycine oxidase compare
Psyr_2591 -1.2 -4.7 transport system permease protein compare
Psyr_3591 -1.2 -3.5 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_2312 -1.2 -1.6 Protein of unknown function DUF24 compare
Psyr_1222 -1.1 -1.6 CDS compare
Psyr_3680 -1.1 -3.1 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase compare
Psyr_2906 -1.1 -2.1 Pilus retraction protein PilT compare
Psyr_1638 -1.1 -2.4 RNAse E compare
Psyr_0826 -1.1 -4.5 glucose-6-phosphate isomerase compare
Psyr_1864 -1.1 -3.0 spermidine synthase compare
Psyr_4822 -1.1 -2.6 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_4194 -1.1 -3.6 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_4902 -1.1 -2.7 Protein of unknown function DUF495 compare
Psyr_1843 -1.1 -2.3 Protein of unknown function DUF1311 compare
Psyr_2778 -1.1 -2.4 Phage minor tail protein L compare
Psyr_1757 -1.1 -6.1 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4203 -1.1 -1.3 SsrA-binding protein compare
Psyr_0914 -1.1 -6.0 Glycosyl transferase, group 1 compare
Psyr_2808 -1.1 -1.5 hypothetical protein compare
Psyr_3280 -1.1 -2.4 methylthioadenosine phosphorylase compare
Psyr_1756 -1.1 -5.7 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4938 -1.1 -5.5 Helix-turn-helix, Fis-type compare
Psyr_1970 -1.1 -2.7 Secretion protein HlyD compare
Psyr_3636 -1.0 -6.7 Polysaccharide biosynthesis protein CapD compare
Psyr_2557 -1.0 -2.5 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like protein compare
Psyr_0920 -1.0 -8.4 Glycosyl transferase, group 1 compare
Psyr_1946 -1.0 -1.7 diaminobutyrate aminotransferase apoenzyme compare
Psyr_0774 -1.0 -2.4 monosaccharide ABC transporter membrane protein, CUT2 family compare
Psyr_4415 -1.0 -4.9 cobalt-factor II C20-methyltransferase / precorrin-2 C20-methyltransferase compare
Psyr_4018 -1.0 -5.2 Formyltetrahydrofolate deformylase compare
Psyr_4716 -1.0 -2.7 Sarcosine oxidase, gamma subunit, heterotetrameric compare
Psyr_2564 -1.0 -3.6 transcriptional regulator, GntR family compare
Psyr_3955 -1.0 -3.8 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_3240 -1.0 -2.2 CTP synthase compare
Psyr_3637 -1.0 -6.8 Glycosyl transferase, family 4 compare
Psyr_0534 -1.0 -7.2 membrane protein, putative compare
Psyr_0936 -1.0 -6.6 Glycosyl transferase, group 1 compare
Psyr_2201 -1.0 -2.3 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family compare
Psyr_4140 -1.0 -1.9 Protein of unknown function DUF140 compare
Psyr_2406 -1.0 -2.3 Flavin reductase-like protein compare
Psyr_3678 -1.0 -3.6 adenosylcobinamide-phosphate synthase compare
Psyr_4277 -1.0 -4.4 Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region compare
Psyr_4414 -1.0 -3.6 precorrin-3 methyltransferase compare
Psyr_4920 -1.0 -1.7 conserved hypothetical bacteriophage protein compare
Psyr_3565 -1.0 -3.1 succinylornithine aminotransferase apoenzyme / acetylornithine aminotransferase apoenzyme compare
Psyr_0838 -1.0 -1.8 Rieske [2Fe-2S] region compare
Psyr_1749 -0.9 -4.1 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_3677 -0.9 -2.4 Aminotransferase, class I and II compare
Psyr_1127 -0.9 -1.5 Heavy metal response regulator compare
Psyr_1249 -0.9 -3.2 histidyl-tRNA synthetase compare
Psyr_1266 -0.9 -4.4 Twin-arginine translocation pathway signal compare
Psyr_1963 -0.9 -3.7 Cyclic peptide transporter compare
Psyr_3337 -0.9 -1.6 gluconate kinase, SKI family compare
Psyr_0528 -0.9 -1.6 Carbamoyltransferase compare
Psyr_3917 -0.9 -6.1 transcriptional regulator, LysR family compare
Psyr_2059 -0.9 -2.8 Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer compare
Psyr_4125 -0.9 -2.3 Protein of unknown function DUF1043 compare
Psyr_5036 -0.9 -1.7 Response regulator receiver compare
Psyr_4019 -0.9 -2.6 H-NS family protein MvaT compare
Psyr_0176 -0.9 -2.0 conserved hypothetical protein compare
Psyr_2171 -0.9 -1.4 HpcH/HpaI aldolase compare
Psyr_0377 -0.9 -3.6 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_0219 -0.9 -5.0 phosphomannomutase compare
Psyr_3040 -0.9 -2.0 conserved hypothetical protein compare
Psyr_2347 -0.9 -2.3 hypothetical protein compare
Psyr_4512 -0.9 -3.5 putative phage-related protein compare
Psyr_0915 -0.9 -5.3 NAD-dependent epimerase/dehydratase compare
Psyr_5135 -0.9 -0.5 Protein of unknown function DUF37 compare
Psyr_0970 -0.9 -3.3 Phosphoribosyltransferase compare
Psyr_4995 -0.9 -2.2 RHS protein compare
Psyr_3475 -0.9 -2.8 Flagellar basal body rod protein:Protein of unknown function DUF1078 compare
Psyr_3959 -0.9 -5.9 L-aspartate oxidase compare
Psyr_3673 -0.8 -1.2 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_1933 -0.8 -2.4 hypothetical protein compare
Psyr_0579 -0.8 -5.5 RNAse R compare
Psyr_1937 -0.8 -2.2 UspA compare
Psyr_0567 -0.8 -2.4 Protein of unknown function UPF0031:YjeF-related protein, N-terminal compare
Psyr_3081 -0.8 -1.8 Secretion protein HlyD compare
Psyr_4567 -0.8 -2.8 Protein of unknown function UPF0075 compare
Psyr_4684 -0.8 -1.0 biotin synthesis protein BioC compare
Psyr_2930 -0.8 -1.7 Glyoxalase/bleomycin resistance protein/dioxygenase compare
Psyr_1953 -0.8 -0.9 conserved hypothetical protein compare
Psyr_1895 -0.8 -1.5 conserved hypothetical protein compare
Psyr_3862 -0.8 -1.8 conserved hypothetical protein compare
Psyr_2807 -0.8 -1.4 NinB compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source Fumaric acid in Pseudomonas syringae pv. syringae B728a

For carbon source Fumaric acid across organisms