Experiment set7IT008 for Pseudomonas syringae pv. syringae B728a

Compare to:

4-Aminobutyric acid carbon source

200 most important genes:

  gene name fitness t score description  
Psyr_1984 -5.3 -5.1 3-isopropylmalate dehydratase, small subunit compare
Psyr_1983 -4.9 -4.8 3-isopropylmalate dehydratase, large subunit compare
Psyr_4897 -4.6 -3.1 imidazoleglycerol-phosphate dehydratase compare
Psyr_0473 -4.5 -3.1 Methionine biosynthesis MetW compare
Psyr_4896 -4.5 -5.3 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_0827 -4.3 -3.0 pantothenate synthetase compare
Psyr_0847 -4.3 -5.1 acetolactate synthase, small subunit compare
Psyr_0846 -4.2 -8.0 acetolactate synthase, large subunit compare
Psyr_4134 -4.2 -8.0 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_4894 -4.2 -8.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_4609 -4.1 -10.3 anthranilate synthase, component I compare
Psyr_4270 -4.1 -6.8 serine hydroxymethyltransferase compare
Psyr_1663 -4.1 -2.8 phosphoribosylanthranilate isomerase compare
Psyr_0557 -4.0 -4.7 phosphoserine phosphatase compare
Psyr_1985 -3.9 -7.5 3-isopropylmalate dehydrogenase compare
Psyr_1269 -3.9 -3.7 phosphoribosylformylglycinamidine synthase compare
Psyr_4844 -3.8 -9.8 HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2 compare
Psyr_4133 -3.8 -10.5 histidinol dehydrogenase compare
Psyr_2462 -3.7 -5.0 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_1669 -3.7 -9.0 O-succinylhomoserine sulfhydrylase compare
Psyr_4909 -3.7 -13.1 gamma-aminobutyrate:proton symporter, AAT family conserved
Psyr_0469 -3.6 -9.5 dihydroxyacid dehydratase compare
Psyr_4580 -3.6 -4.8 anthranilate phosphoribosyltransferase compare
Psyr_0917 -3.6 -8.2 ABC-2 compare
Psyr_0918 -3.6 -10.4 ABC transporter compare
Psyr_1544 -3.5 -4.1 SirA-like protein compare
Psyr_4740 -3.5 -6.6 thiazole-phosphate synthase compare
Psyr_0704 -3.5 -9.9 glutamate 5-kinase compare
Psyr_4340 -3.5 -7.7 phosphomethylpyrimidine kinase, putative compare
Psyr_4940 -3.5 -2.9 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_0831 -3.4 -3.3 Two-component response regulator CbrB compare
Psyr_0474 -3.4 -8.9 homoserine O-acetyltransferase compare
Psyr_0848 -3.4 -9.0 ketol-acid reductoisomerase compare
Psyr_0090 -3.3 -13.4 4-aminobutyrate aminotransferase apoenzyme conserved
Psyr_4852 -3.3 -8.6 D-3-phosphoglycerate dehydrogenase compare
Psyr_4091 -3.3 -6.4 8-oxo-dGTPase compare
Psyr_0034 -3.3 -4.4 tryptophan synthase, beta chain compare
Psyr_4369 -3.2 -6.0 glutamate-5-semialdehyde dehydrogenase compare
Psyr_3174 -3.2 -5.8 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_1668 -3.2 -5.6 amidophosphoribosyltransferase compare
Psyr_4132 -3.1 -10.5 histidinol phosphate aminotransferase apoenzyme compare
Psyr_4581 -3.0 -3.5 anthranilate synthase, component II compare
Psyr_1257 -3.0 -11.3 2-isopropylmalate synthase compare
Psyr_2077 -3.0 -6.7 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_1963 -2.6 -7.5 Cyclic peptide transporter compare
Psyr_4341 -2.5 -7.5 thiamine-phosphate diphosphorylase compare
Psyr_1378 -2.4 -4.1 RecA protein compare
Psyr_1148 -2.4 -6.7 branched chain amino acid aminotransferase apoenzyme compare
Psyr_4128 -2.4 -8.0 sulfate adenylyltransferase subunit 2 compare
Psyr_4687 -2.3 -4.6 biotin synthase compare
Psyr_0976 -2.3 -4.6 Malate:quinone-oxidoreductase compare
Psyr_0832 -2.3 -6.7 Two-component sensor kinase CbrA compare
Psyr_0033 -2.3 -4.4 tryptophan synthase, alpha chain compare
Psyr_4126 -2.3 -11.8 adenylylsulfate kinase / sulfate adenylyltransferase subunit 1 compare
Psyr_0454 -2.2 -4.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_1247 -2.1 -2.4 conserved hypothetical protein compare
Psyr_0386 -2.1 -3.5 phosphoribosyl-AMP cyclohydrolase compare
Psyr_0208 -2.1 -7.9 endoribonuclease L-PSP compare
Psyr_4686 -2.0 -4.3 8-amino-7-oxononanoate synthase compare
Psyr_0393 -2.0 -4.0 Protein of unknown function DUF971 compare
Psyr_4893 -1.9 -1.4 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_0544 -1.9 -9.5 hydroxymethylpyrimidine synthase compare
Psyr_0576 -1.9 -2.8 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_1966 -1.9 -3.6 Peptidase M19, renal dipeptidase compare
Psyr_4015 -1.9 -3.0 conserved domain protein compare
Psyr_4408 -1.9 -6.7 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_4991 -1.8 -2.6 hypothetical protein compare
Psyr_3202 -1.8 -2.9 NADH dehydrogenase subunit G compare
Psyr_0951 -1.8 -2.9 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1542 -1.8 -8.7 quinolinate synthetase compare
Psyr_3013 -1.8 -3.5 magnesium chelatase subunit ChlD compare
Psyr_4127 -1.8 -4.0 S23 ribosomal compare
Psyr_3690 -1.8 -5.2 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_4089 -1.7 -6.1 PAS compare
Psyr_0385 -1.7 -3.3 phosphoribosyl-ATP pyrophosphatase compare
Psyr_0091 -1.6 -6.7 succinate semialdehyde dehydrogenase conserved
Psyr_4910 -1.6 -4.3 hypothetical protein compare
Psyr_0014 -1.6 -4.1 lipid A biosynthesis acyltransferase compare
Psyr_1613 -1.5 -3.0 septum site-determining protein MinC compare
Psyr_1965 -1.5 -4.3 Twin-arginine translocation pathway signal compare
Psyr_0168 -1.5 -6.6 Phosphoenolpyruvate carboxykinase (ATP) compare
Psyr_1953 -1.5 -2.2 conserved hypothetical protein compare
Psyr_4203 -1.5 -1.9 SsrA-binding protein compare
Psyr_3293 -1.4 -2.7 UspA compare
Psyr_3674 -1.4 -2.0 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase compare
Psyr_4684 -1.4 -1.5 biotin synthesis protein BioC compare
Psyr_3287 -1.3 -2.5 DNA topoisomerase I compare
Psyr_4683 -1.3 -2.9 dethiobiotin synthase compare
Psyr_4407 -1.3 -2.4 phosphoribosylamine--glycine ligase compare
Psyr_3199 -1.3 -2.8 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_4362 -1.3 -2.7 Rare lipoprotein A compare
Psyr_1749 -1.3 -5.3 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 compare
Psyr_0815 -1.3 -3.6 nicotinate-nucleotide pyrophosphorylase (carboxylating) compare
Psyr_4788 -1.3 -2.5 lipoprotein, putative compare
Psyr_3640 -1.2 -2.5 conserved hypothetical protein compare
Psyr_2485 -1.2 -6.1 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_0833 -1.2 -3.4 conserved hypothetical protein compare
Psyr_4882 -1.2 -5.4 protein translocase subunit secB compare
Psyr_4902 -1.2 -2.4 Protein of unknown function DUF495 compare
Psyr_1408 -1.2 -2.3 Holliday junction endonuclease RuvC compare
Psyr_2461 -1.2 -1.9 Uncharacterized conserved protein UCP030820 compare
Psyr_0383 -1.2 -1.1 Twin-arginine translocation protein TatB compare
Psyr_4141 -1.2 -3.7 ABC transporter compare
Psyr_1910 -1.2 -3.9 VacJ-like lipoprotein compare
Psyr_1968 -1.2 -2.3 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_2593 -1.2 -3.6 ABC transporter compare
Psyr_0571 -1.2 -2.9 tRNA isopentenyltransferase compare
Psyr_0232 -1.2 -7.0 gamma-glutamylputrescine oxidase compare
Psyr_5132 -1.2 -2.2 Glucose-inhibited division protein A subfamily compare
Psyr_4920 -1.2 -1.7 conserved hypothetical bacteriophage protein compare
Psyr_2160 -1.2 -2.7 cold-shock DNA-binding protein family compare
Psyr_4139 -1.2 -4.4 Mce4/Rv3499c/MTV023.06c protein compare
Psyr_1097 -1.1 -2.1 glycine cleavage system H protein compare
Psyr_2483 -1.1 -7.2 Acriflavin resistance protein compare
Psyr_3673 -1.1 -2.0 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_0464 -1.1 -2.1 hypothetical protein compare
Psyr_0915 -1.1 -6.5 NAD-dependent epimerase/dehydratase compare
Psyr_0919 -1.1 -7.0 Chromosome segregation ATPase-like protein compare
Psyr_0826 -1.1 -4.6 glucose-6-phosphate isomerase compare
Psyr_1964 -1.1 -3.5 Protein of unknown function DUF323 compare
Psyr_2360 -1.1 -2.0 CBS compare
Psyr_3886 -1.1 -1.2 methionyl-tRNA synthetase compare
Psyr_1350 -1.1 -2.9 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_2930 -1.1 -1.8 Glyoxalase/bleomycin resistance protein/dioxygenase compare
Psyr_4380 -1.1 -3.0 translation initiation factor 1 (eIF-1/SUI1) compare
Psyr_0293 -1.1 -7.2 Polyphosphate kinase compare
Psyr_4138 -1.1 -3.0 Toluene tolerance compare
Psyr_4622 -1.1 -3.2 Nucleotidyl transferase compare
Psyr_3680 -1.1 -2.9 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) / cobyrinate a,c-diamide synthase compare
Psyr_1250 -1.1 -2.0 conserved hypothetical protein compare
Psyr_3678 -1.0 -4.0 adenosylcobinamide-phosphate synthase compare
Psyr_4416 -1.0 -2.7 precorrin-8X methylmutase compare
Psyr_3480 -1.0 -2.7 Flagellar basal-body rod protein FlgC compare
Psyr_3675 -1.0 -1.7 adenosylcobinamide kinase compare
Psyr_3672 -1.0 -2.6 cobalamin-5'-phosphate synthase compare
Psyr_1949 -1.0 -2.9 ABC-3 compare
Psyr_0025 -1.0 -2.3 shikimate dehydrogenase compare
Psyr_1962 -1.0 -5.7 TonB-dependent siderophore receptor compare
Psyr_4277 -1.0 -4.5 Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region compare
Psyr_4682 -1.0 -1.4 conserved hypothetical protein compare
Psyr_2482 -1.0 -3.8 Secretion protein HlyD compare
Psyr_1955 -1.0 -2.2 Propeptide, PepSY amd peptidase M4:PepSY-associated TM helix compare
Psyr_4774 -1.0 -1.3 Hypothetical protein compare
Psyr_3240 -1.0 -1.4 CTP synthase compare
Psyr_3198 -1.0 -1.9 NADH dehydrogenase subunit B compare
Psyr_3612 -1.0 -3.9 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal compare
Psyr_1969 -1.0 -4.4 ABC transporter:Protein of unknown function DUF214 compare
Psyr_3691 -1.0 -3.8 conserved hypothetical protein compare
Psyr_2767 -1.0 -2.2 Glycoside hydrolase, family 19 compare
Psyr_4018 -1.0 -5.0 Formyltetrahydrofolate deformylase compare
Psyr_4140 -1.0 -1.8 Protein of unknown function DUF140 compare
Psyr_1816 -0.9 -2.8 transcriptional regulator, GntR family compare
Psyr_2464 -0.9 -4.6 methionine synthase (B12-dependent) compare
Psyr_3547 -0.9 -3.7 transcriptional regulator, TetR family compare
Psyr_2906 -0.9 -1.8 Pilus retraction protein PilT compare
Psyr_0487 -0.9 -1.3 glutathione synthase compare
Psyr_0574 -0.9 -3.3 protease FtsH subunit HflK compare
Psyr_1757 -0.9 -5.2 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0477 -0.9 -4.0 Protein of unknown function UPF0001 compare
Psyr_1933 -0.9 -2.1 hypothetical protein compare
Psyr_5135 -0.9 -0.6 Protein of unknown function DUF37 compare
Psyr_4575 -0.9 -5.9 adenosylmethionine decarboxylase proenzyme compare
Psyr_3337 -0.9 -2.7 gluconate kinase, SKI family compare
Psyr_3610 -0.9 -1.8 GAF compare
Psyr_1530 -0.9 -2.2 hypothetical protein compare
Psyr_1780 -0.9 -1.8 transcriptional regulator, TetR family compare
Psyr_4414 -0.9 -3.3 precorrin-3 methyltransferase compare
Psyr_1864 -0.9 -2.5 spermidine synthase compare
Psyr_4088 -0.9 -3.1 ketopantoate reductase compare
Psyr_0037 -0.9 -2.1 Protein of unknown function DUF1458 compare
Psyr_4087 -0.9 -1.2 Protein of unknown function DUF520 compare
Psyr_1410 -0.9 -2.9 Holliday junction DNA helicase RuvB compare
Psyr_2592 -0.9 -3.6 transport system permease protein compare
Psyr_0511 -0.9 -2.8 conserved hypothetical protein compare
Psyr_2193 -0.8 -2.9 Secretion protein HlyD compare
Psyr_2031 -0.8 -2.6 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_3695 -0.8 -5.6 RelA/SpoT protein compare
Psyr_4573 -0.8 -5.5 Histidine triad (HIT) protein compare
Psyr_3184 -0.8 -1.9 ATP-dependent Clp protease adaptor protein ClpS compare
Psyr_2757 -0.8 -1.8 Binding-protein-dependent transport systems inner membrane component compare
Psyr_1337 -0.8 -1.8 Conserved hypothetical protein ArsC related protein compare
Psyr_2337 -0.8 -1.9 conserved hypothetical protein compare
Psyr_3146 -0.8 -1.3 general secretion pathway protein J, putative compare
Psyr_2262 -0.8 -1.7 Peptidase M20:Peptidase M20 compare
Psyr_0268 -0.8 -1.7 DSBA oxidoreductase compare
Psyr_3462 -0.8 -1.6 conserved hypothetical protein compare
Psyr_2808 -0.8 -1.6 hypothetical protein compare
Psyr_2401 -0.8 -2.8 extracellular solute-binding protein, family 1 compare
Psyr_1596 -0.8 -1.4 Helix-turn-helix motif protein compare
Psyr_2433 -0.8 -2.7 conserved hypothetical protein compare
Psyr_2970 -0.8 -3.1 TPR repeat protein:TPR repeat protein compare
Psyr_4161 -0.8 -1.6 Rod shape-determining protein MreD compare
Psyr_0937 -0.8 -4.9 mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP) compare
Psyr_0920 -0.8 -6.6 Glycosyl transferase, group 1 compare
Psyr_2154 -0.8 -2.9 transcriptional regulator, LacI family compare
Psyr_3450 -0.8 -2.1 Hpt compare
Psyr_3213 -0.8 -2.1 Propeptide, PepSY amd peptidase M4 compare
Psyr_4867 -0.8 -5.0 L-glutamine synthetase compare
Psyr_5133 -0.8 -2.3 tRNA modification GTPase trmE compare
Psyr_1614 -0.8 -1.6 lipid A biosynthesis acyltransferase compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source 4-Aminobutyric acid in Pseudomonas syringae pv. syringae B728a

For carbon source 4-Aminobutyric acid across organisms