Experiment set7IT007 for Methanococcus maripaludis S2

Compare to:

Formate N-free with 2mM Adenosine

200 most important genes:

  gene name fitness t score description  
MMP_RS00130 -3.4 -1.1 nickel-responsive transcriptional regulator NikR compare
MMP_RS02235 -3.2 -9.2 CBS domain-containing protein compare
MMP_RS02605 -2.9 -0.9 MotA/TolQ/ExbB proton channel family protein compare
MMP_RS04015 -2.4 -1.7 hypothetical protein compare
MMP_RS06325 -2.4 -1.3 hypothetical protein compare
MMP_RS01570 -2.4 -1.5 hypothetical protein compare
MMP_RS08940 -2.3 -1.2 MetS family NSS transporter small subunit compare
MMP_RS03960 -1.8 -0.8 hypothetical protein compare
MMP_RS06840 -1.8 -0.8 DNA-directed RNA polymerase subunit N compare
MMP_RS04145 -1.8 -1.4 hypothetical protein compare
MMP_RS05550 -1.8 -0.6 cation:proton antiporter compare
MMP_RS08350 -1.6 -0.7 hypothetical protein compare
MMP_RS01675 -1.6 -1.4 hypothetical protein compare
MMP_RS01265 -1.6 -2.1 hypothetical protein compare
MMP_RS02045 -1.6 -1.4 tRNA-Met compare
MMP_RS01055 -1.6 -3.3 hypothetical protein compare
MMP_RS08615 -1.4 -1.6 flagellar protein G compare
MMP_RS03220 -1.4 -1.8 RNA 2' 3'-cyclic phosphodiesterase compare
MMP_RS06175 -1.3 -4.1 winged helix-turn-helix transcriptional regulator compare
MMP_RS04900 -1.3 -10.8 hypothetical protein compare
MMP_RS07635 -1.3 -4.5 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS01380 -1.3 -3.1 PHP domain-containing protein compare
MMP_RS02470 -1.3 -1.2 helix-turn-helix transcriptional regulator compare
MMP_RS05085 -1.3 -6.5 AAA family ATPase compare
MMP_RS05835 -1.3 -0.6 secondary thiamine-phosphate synthase enzyme YjbQ compare
MMP_RS05515 -1.3 -5.8 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS02010 -1.2 -5.8 PHP domain-containing protein compare
MMP_RS06375 -1.2 -4.8 ATP-dependent sacrificial sulfur transferase LarE compare
MMP_RS01365 -1.2 -2.4 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS00345 -1.2 -2.6 DUF2666 domain-containing protein compare
MMP_RS05865 -1.2 -2.6 hypothetical protein compare
MMP_RS01745 -1.2 -3.7 AMP phosphorylase compare
MMP_RS03015 -1.2 -4.0 GTP 3' 8-cyclase MoaA compare
MMP_RS03065 -1.1 -1.9 AzlC family ABC transporter permease compare
MMP_RS06680 -1.1 -5.6 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS04060 -1.1 -4.2 hypothetical protein compare
MMP_RS03400 -1.1 -1.1 archease compare
MMP_RS06720 -1.1 -4.3 response regulator transcription factor compare
MMP_RS04605 -1.1 -3.0 cobalt ECF transporter T component CbiQ compare
MMP_RS05975 -1.0 -1.0 hypothetical protein compare
MMP_RS06715 -1.0 -7.2 cache domain-containing protein compare
MMP_RS03475 -1.0 -0.4 hypothetical protein compare
MMP_RS06355 -1.0 -1.7 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS07345 -1.0 -3.5 glycine synthesis protein GlyXL (from data) compare
MMP_RS03485 -1.0 -2.4 TIGR00267 family protein compare
MMP_RS07735 -1.0 -0.4 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS08310 -1.0 -1.3 TMEM165/GDT1 family protein compare
MMP_RS04410 -1.0 -2.9 hypothetical protein compare
MMP_RS05080 -1.0 -6.1 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS05540 -1.0 -3.1 hypothetical protein compare
MMP_RS02900 -1.0 -0.3 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS07720 -1.0 -4.8 4Fe-4S binding protein compare
MMP_RS03590 -1.0 -2.8 METTL5 family protein compare
MMP_RS08165 -1.0 -0.7 phosphoglycerate dehydrogenase compare
MMP_RS01455 -1.0 -3.7 nickel pincer cofactor biosynthesis protein LarC compare
MMP_RS05450 -1.0 -1.9 CoB--CoM heterodisulfide reductase subunit C compare
MMP_RS06760 -0.9 -1.9 hypothetical protein compare
MMP_RS05060 -0.9 -4.3 AAA family ATPase compare
MMP_RS03080 -0.9 -1.1 universal stress protein compare
MMP_RS05875 -0.9 -2.7 hydroxyethylthiazole kinase compare
MMP_RS05695 -0.9 -4.1 phospholipase D-like domain-containing protein compare
MMP_RS06585 -0.9 -1.1 DMT family protein compare
MMP_RS04870 -0.9 -2.7 TIGR02253 family HAD-type hydrolase compare
MMP_RS05500 -0.9 -2.7 2-isopropylmalate synthase compare
MMP_RS06345 -0.9 -5.3 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS01610 -0.9 -1.5 hypothetical protein compare
MMP_RS00080 -0.9 -2.0 RecB-family nuclease compare
MMP_RS06685 -0.9 -4.9 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS07960 -0.9 -3.9 sugar phosphate isomerase/epimerase compare
MMP_RS08320 -0.9 -2.6 molybdopterin molybdotransferase MoeA compare
MMP_RS06700 -0.9 -5.2 hypothetical protein compare
MMP_RS04215 -0.9 -3.9 nickel pincer cofactor biosynthesis protein LarB compare
MMP_RS06350 -0.9 -2.6 HesA/MoeB/ThiF family protein compare
MMP_RS03550 -0.9 -1.2 DUF2124 domain-containing protein compare
MMP_RS02965 -0.9 -2.0 carboxymuconolactone decarboxylase family protein compare
MMP_RS06915 -0.8 -3.7 metallophosphoesterase compare
MMP_RS00990 -0.8 -1.0 hypothetical protein compare
MMP_RS05090 -0.8 -3.8 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS04695 -0.8 -4.0 selenide water dikinase SelD compare
MMP_RS05965 -0.8 -1.6 carboxymuconolactone decarboxylase family protein compare
MMP_RS06335 -0.8 -1.5 HAD family hydrolase compare
MMP_RS05140 -0.8 -1.6 helix-turn-helix transcriptional regulator compare
MMP_RS05095 -0.8 -3.0 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS00535 -0.8 -1.7 TIGR00375 family protein compare
MMP_RS05075 -0.8 -5.2 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS08100 -0.8 -3.4 8-amino-7-oxononanoate synthase compare
MMP_RS05545 -0.8 -2.3 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS00855 -0.8 -2.5 DUF367 family protein compare
MMP_RS00695 -0.8 -0.4 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS05765 -0.8 -2.2 M42 family metallopeptidase compare
MMP_RS04100 -0.8 -1.6 hypothetical protein compare
MMP_RS05055 -0.8 -4.4 DUF166 domain-containing protein compare
MMP_RS04610 -0.8 -1.6 Dabb family protein compare
MMP_RS07860 -0.8 -0.5 hypothetical protein compare
MMP_RS07765 -0.8 -2.6 sodium:alanine symporter family protein compare
MMP_RS08980 -0.8 -1.9 hypothetical protein compare
MMP_RS04620 -0.8 -3.5 cobalt transporter CbiM compare
MMP_RS02175 -0.8 -0.4 DUF1611 domain-containing protein compare
MMP_RS05365 -0.8 -1.4 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
MMP_RS02370 -0.8 -1.3 NifB/NifX family molybdenum-iron cluster-binding protein compare
MMP_RS07880 -0.8 -3.4 AAA family ATPase compare
MMP_RS00720 -0.7 -2.8 metal-dependent hydrolase compare
MMP_RS06895 -0.7 -0.7 selenocysteine-specific translation elongation factor compare
MMP_RS02300 -0.7 -2.6 NAD(P)H-dependent oxidoreductase compare
MMP_RS01320 -0.7 -1.8 hypothetical protein compare
MMP_RS07445 -0.7 -3.7 helix-turn-helix domain-containing protein compare
MMP_RS01175 -0.7 -1.6 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS01870 -0.7 -3.2 acyl-CoA dehydratase activase compare
MMP_RS05985 -0.7 -1.2 hypothetical protein compare
MMP_RS05675 -0.7 -1.5 phosphate ABC transporter ATP-binding protein PstB compare
MMP_RS00675 -0.7 -0.5 nitroreductase family protein compare
MMP_RS08390 -0.7 -1.8 DUF5400 domain-containing protein compare
MMP_RS04125 -0.7 -1.7 TetR/AcrR family transcriptional regulator compare
MMP_RS00670 -0.7 -2.0 TIM barrel protein compare
MMP_RS03440 -0.7 -0.6 MoaD/ThiS family protein compare
MMP_RS02170 -0.7 -1.4 CBS domain-containing protein compare
MMP_RS05100 -0.7 -4.9 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS05850 -0.7 -2.1 Ldh family oxidoreductase compare
MMP_RS01790 -0.7 -1.5 restriction endonuclease compare
MMP_RS04190 -0.7 -1.9 hypothetical protein compare
MMP_RS05070 -0.7 -3.2 4Fe-4S dicluster domain-containing protein compare
MMP_RS04735 -0.7 -1.9 tautomerase family protein compare
MMP_RS05065 -0.7 -1.2 CooT family nickel-binding protein compare
MMP_RS00120 -0.7 -1.9 LysR family transcriptional regulator compare
MMP_RS03235 -0.6 -1.7 tRNA pseudouridine(13) synthase TruD compare
MMP_RS00950 -0.6 -1.7 site-2 protease family protein compare
MMP_RS01805 -0.6 -1.8 NUDIX hydrolase compare
MMP_RS08745 -0.6 -1.9 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS07185 -0.6 -3.9 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS06920 -0.6 -3.2 AAA family ATPase compare
MMP_RS01335 -0.6 -0.9 prefoldin subunit beta compare
MMP_RS01385 -0.6 -0.3 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS08215 -0.6 -1.2 DUF483 domain-containing protein compare
MMP_RS02800 -0.6 -2.8 nucleotidyltransferase domain-containing protein compare
MMP_RS07605 -0.6 -1.5 diadenylate cyclase compare
MMP_RS05800 -0.6 -3.1 B12-binding domain-containing radical SAM protein compare
MMP_RS04205 -0.6 -2.4 carboxymuconolactone decarboxylase family protein compare
MMP_RS09020 -0.6 -0.6 hypothetical protein compare
MMP_RS08240 -0.6 -1.8 methanogenesis marker 16 metalloprotein compare
MMP_RS00700 -0.6 -1.5 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS06870 -0.6 -2.2 DedA family protein compare
MMP_RS08750 -0.6 -1.7 hypothetical protein compare
MMP_RS03900 -0.6 -2.2 minichromosome maintenance protein MCM compare
MMP_RS00290 -0.6 -1.9 hypothetical protein compare
MMP_RS04500 -0.6 -3.6 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS07615 -0.6 -2.2 energy-coupling factor ABC transporter permease compare
MMP_RS08395 -0.6 -1.5 DsrE family protein compare
MMP_RS03555 -0.6 -2.4 transcriptional regulator compare
MMP_RS08400 -0.6 -1.1 MJ0307 family thioredoxin compare
MMP_RS05830 -0.6 -0.9 peptidyl-prolyl cis-trans isomerase compare
MMP_RS02745 -0.6 -0.8 hypothetical protein compare
MMP_RS04595 -0.6 -1.7 hypothetical protein compare
MMP_RS07005 -0.6 -0.2 4Fe-4S binding protein compare
MMP_RS07525 -0.6 -2.5 4Fe-4S binding protein compare
MMP_RS03340 -0.6 -0.3 ABC transporter ATP-binding protein compare
MMP_RS01630 -0.6 -2.4 N-glycosylase/DNA lyase compare
MMP_RS03120 -0.6 -1.4 hypothetical protein compare
MMP_RS00710 -0.6 -1.7 hypothetical protein compare
MMP_RS02215 -0.6 -2.9 ECF transporter S component compare
MMP_RS02550 -0.6 -1.3 helix-turn-helix transcriptional regulator compare
MMP_RS06370 -0.5 -1.6 biotin synthase BioB compare
MMP_RS06020 -0.5 -1.2 archaeoflavoprotein AfpA compare
MMP_RS04020 -0.5 -1.7 hypothetical protein compare
MMP_RS06705 -0.5 -2.1 formate/nitrite transporter family protein compare
MMP_RS05490 -0.5 -1.9 IMPACT family protein compare
MMP_RS01495 -0.5 -2.7 TraB/GumN family protein compare
MMP_RS05235 -0.5 -2.4 exodeoxyribonuclease III compare
MMP_RS02885 -0.5 -3.2 molybdopterin biosynthesis protein compare
MMP_RS03000 -0.5 -3.3 cupin domain-containing protein compare
MMP_RS01755 -0.5 -0.5 DUF2097 domain-containing protein compare
MMP_RS03490 -0.5 -0.7 DUF2115 domain-containing protein compare
MMP_RS03495 -0.5 -2.4 Na/Pi cotransporter family protein compare
MMP_RS02000 -0.5 -1.2 radical SAM protein compare
MMP_RS03910 -0.5 -0.7 hypothetical protein compare
MMP_RS06910 -0.5 -2.3 RlmF-related methyltransferase compare
MMP_RS03205 -0.5 -0.5 peptidyl-tRNA hydrolase Pth2 compare
MMP_RS04320 -0.5 -2.6 uroporphyrinogen decarboxylase family protein compare
MMP_RS03675 -0.5 -2.5 RimK family alpha-L-glutamate ligase compare
MMP_RS05950 -0.5 -1.7 nickel-dependent hydrogenase large subunit compare
MMP_RS00280 -0.5 -3.0 DUF2118 domain-containing protein compare
MMP_RS03895 -0.5 -0.7 hypothetical protein compare
MMP_RS02920 -0.5 -2.6 DMT family transporter compare
MMP_RS08340 -0.5 -1.2 4Fe-4S binding protein compare
MMP_RS07355 -0.5 -0.3 transcription factor S compare
MMP_RS00655 -0.5 -1.0 hypothetical protein compare
MMP_RS07890 -0.5 -0.9 OB-fold nucleic acid binding domain-containing protein compare
MMP_RS02825 -0.5 -2.3 mechanosensitive ion channel family protein compare
MMP_RS03025 -0.5 -1.5 molybdenum cofactor guanylyltransferase compare
MMP_RS04945 -0.5 -1.6 hypothetical protein compare
MMP_RS08410 -0.5 -1.3 DUF169 domain-containing protein compare
MMP_RS07815 -0.5 -0.4 DUF2120 domain-containing protein compare
MMP_RS02530 -0.5 -1.5 type II toxin-antitoxin system mRNA interferase toxin RelE/StbE family compare
MMP_RS04995 -0.5 -2.1 hypothetical protein compare
MMP_RS08770 -0.5 -2.0 hypothetical protein compare
MMP_RS06105 -0.5 -2.3 hydrogenase maturation peptidase HycI compare
MMP_RS01250 -0.5 -1.1 tRNA (guanine(26)-N(2))-dimethyltransferase compare
MMP_RS08275 -0.5 -2.3 hypothetical protein compare
MMP_RS00040 -0.5 -1.7 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS05110 -0.5 -2.0 16S ribosomal RNA methyltransferase A compare
MMP_RS07415 -0.5 -1.4 molybdopterin-guanine dinucleotide biosynthesis protein MobB compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source Adenosine in Methanococcus maripaludis S2

For nitrogen source Adenosine across organisms