Experiment set7IT006 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_00760 -4.4 -5.6 envelope stress response regulator transcription factor CpxR compare
IAI47_18830 -3.4 -1.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_07350 -3.4 -0.9 hypothetical protein compare
IAI47_10835 -3.2 -0.9 tRNA-Val compare
IAI47_05155 -3.2 -17.5 polyphosphate kinase 1 compare
IAI47_07450 -3.2 -2.2 winged helix-turn-helix domain-containing protein compare
IAI47_04335 -3.0 -3.5 tRNA-Arg compare
IAI47_11360 -2.9 -2.6 hypothetical protein compare
IAI47_13695 -2.9 -0.8 colicin uptake protein TolR compare
IAI47_04800 -2.9 -1.1 RnfH family protein compare
IAI47_08085 -2.9 -3.9 helix-turn-helix domain-containing protein compare
IAI47_05745 -2.9 -1.8 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_13050 -2.6 -5.7 YbjN domain-containing protein compare
IAI47_00780 -2.5 -4.2 6-phosphofructokinase compare
IAI47_16995 -2.5 -2.4 protein YrbN compare
IAI47_18215 -2.4 -2.4 Trk system potassium transporter TrkH compare
IAI47_20595 -2.4 -3.9 GhoT/OrtT family toxin compare
IAI47_07025 -2.4 -5.2 glycosyltransferase family 4 protein compare
IAI47_13690 -2.4 -0.6 cell envelope integrity protein TolA compare
IAI47_08680 -2.3 -6.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI47_05070 -2.3 -0.6 outer membrane protein assembly factor BamB compare
IAI47_07030 -2.2 -6.4 HAD family hydrolase compare
IAI47_15485 -2.2 -1.0 molecular chaperone Skp compare
IAI47_13625 -2.2 -8.6 CDF family zinc transporter ZitB compare
IAI47_08065 -2.1 -4.9 acyltransferase compare
IAI47_21765 -2.1 -2.3 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_03550 -2.0 -10.1 membrane-bound lytic murein transglycosylase MltC compare
IAI47_09635 -2.0 -3.5 hypothetical protein compare
IAI47_18480 -1.9 -11.6 lipid III flippase WzxE compare
IAI47_07475 -1.9 -0.8 hypothetical protein compare
IAI47_00300 -1.9 -1.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_14230 -1.9 -7.2 DotU family type IV/VI secretion system protein compare
IAI47_05660 -1.9 -6.9 serine protease compare
IAI47_07485 -1.9 -3.4 DUF4756 family protein compare
IAI47_02585 -1.9 -5.2 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI47_07480 -1.9 -1.8 hypothetical protein compare
IAI47_09145 -1.9 -4.3 UPF0259 family protein compare
IAI47_04300 -1.9 -6.3 recombinase RecA compare
IAI47_21655 -1.8 -0.9 LacI family DNA-binding transcriptional regulator compare
IAI47_00465 -1.8 -2.4 ribosome-dependent GTPase TypA compare
IAI47_04775 -1.8 -3.0 SIR2 family protein compare
IAI47_11515 -1.8 -1.4 hypothetical protein compare
IAI47_19935 -1.8 -3.1 hypothetical protein compare
IAI47_03375 -1.7 -8.3 peptide chain release factor 3 compare
IAI47_10430 -1.7 -1.8 hypothetical protein compare
IAI47_15635 -1.7 -2.4 RNA polymerase-binding protein DksA compare
IAI47_18145 -1.7 -2.7 elongation factor Tu compare
IAI47_11540 -1.7 -2.4 type VI secretion system tip protein VgrG compare
IAI47_12770 -1.7 -6.1 MBL fold metallo-hydrolase compare
IAI47_11375 -1.7 -1.2 hypothetical protein compare
IAI47_13700 -1.6 -3.2 Tol-Pal system protein TolQ compare
IAI47_06135 -1.6 -3.3 phosphohistidine phosphatase SixA compare
IAI47_16520 -1.6 -9.1 hypothetical protein compare
IAI47_15980 -1.6 -8.4 catabolite repressor/activator compare
IAI47_12260 -1.6 -3.7 hypothetical protein compare
IAI47_16085 -1.6 -1.3 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_01365 -1.5 -1.8 inorganic phosphate transporter PitA compare
IAI47_02255 -1.5 -8.8 DUF1992 domain-containing protein compare
IAI47_15155 -1.5 -3.4 DUF943 family protein compare
IAI47_12790 -1.5 -0.6 chromosome partition protein MukE compare
IAI47_08450 -1.4 -1.7 Holliday junction branch migration DNA helicase RuvB compare
IAI47_05090 -1.4 -3.1 hypothetical protein compare
IAI47_13065 -1.4 -1.3 DUF1418 family protein compare
IAI47_21595 -1.4 -7.7 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_16095 -1.4 -3.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_04465 -1.4 -10.5 MFS transporter compare
IAI47_01345 -1.4 -8.9 oligopeptidase A compare
IAI47_01825 -1.4 -6.0 two-component system sensor histidine kinase EnvZ compare
IAI47_21665 -1.4 -1.5 DUF333 domain-containing protein compare
IAI47_19325 -1.4 -2.6 transposase compare
IAI47_11475 -1.4 -0.8 hypothetical protein compare
IAI47_01530 -1.4 -4.4 DUF1145 family protein compare
IAI47_18775 -1.4 -4.5 hypothetical protein compare
IAI47_03590 -1.4 -5.6 YggT family protein compare
IAI47_07355 -1.4 -4.2 winged helix-turn-helix domain-containing protein compare
IAI47_03440 -1.3 -2.9 general stress protein compare
IAI47_07020 -1.3 -1.0 hypothetical protein compare
IAI47_11425 -1.3 -2.6 hypothetical protein compare
IAI47_10365 -1.3 -5.3 adenosine deaminase compare
IAI47_01475 -1.3 -5.2 MurR/RpiR family transcriptional regulator compare
IAI47_13355 -1.3 -7.3 DMT family transporter compare
IAI47_08050 -1.3 -5.7 hypothetical protein compare
IAI47_07325 -1.3 -5.6 type 1 fimbrial protein compare
IAI47_05795 -1.3 -2.6 hypothetical protein compare
IAI47_00655 -1.3 -2.8 glycosyltransferase family 4 protein compare
IAI47_07330 -1.3 -5.3 hypothetical protein compare
IAI47_18015 -1.3 -9.0 homoserine O-succinyltransferase compare
IAI47_14945 -1.2 -2.2 pyrroline-5-carboxylate reductase compare
IAI47_02090 -1.2 -3.0 elongation factor Tu compare
IAI47_11500 -1.2 -2.1 type VI secretion system tip protein VgrG compare
IAI47_13720 -1.2 -3.6 cytochrome d ubiquinol oxidase subunit II compare
IAI47_14205 -1.2 -4.7 hypothetical protein compare
IAI47_08055 -1.2 -4.1 lysis protein compare
IAI47_17965 -1.2 -7.2 glucose-6-phosphate isomerase compare
IAI47_12765 -1.2 -6.8 aspartate/tyrosine/aromatic aminotransferase compare
IAI47_14210 -1.2 -3.1 hypothetical protein compare
IAI47_17020 -1.2 -2.7 30S ribosome-binding factor RbfA compare
IAI47_09945 -1.2 -2.4 hydroxyisourate hydrolase compare
IAI47_08625 -1.2 -2.6 hypothetical protein compare
IAI47_04705 -1.2 -0.7 hypothetical protein compare
IAI47_00430 -1.2 -9.3 DNA polymerase I compare
IAI47_19945 -1.2 -0.5 hypothetical protein compare
IAI47_10790 -1.2 -2.6 YnhF family membrane protein compare
IAI47_19295 -1.2 -1.5 hypothetical protein compare
IAI47_19690 -1.2 -0.6 hypothetical protein compare
IAI47_21545 -1.2 -6.7 SgcJ/EcaC family oxidoreductase compare
IAI47_21290 -1.2 -2.5 alpha/beta hydrolase compare
IAI47_05845 -1.2 -4.1 hypothetical protein compare
IAI47_01350 -1.2 -5.3 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ compare
IAI47_04830 -1.2 -3.4 autonomous glycyl radical cofactor GrcA compare
IAI47_10615 -1.1 -5.3 glucose 1-dehydrogenase compare
IAI47_02990 -1.1 -5.7 hypothetical protein compare
IAI47_09630 -1.1 -3.2 type VI secretion system tube protein Hcp compare
IAI47_08190 -1.1 -6.2 acyltransferase family protein compare
IAI47_14200 -1.1 -1.8 hypothetical protein compare
IAI47_11635 -1.1 -2.5 hypothetical protein compare
IAI47_10185 -1.1 -2.6 PTS sugar transporter subunit IIB compare
IAI47_12265 -1.1 -3.8 secY/secA suppressor protein compare
IAI47_11510 -1.1 -3.2 hypothetical protein compare
IAI47_07335 -1.1 -6.2 hypothetical protein compare
IAI47_16545 -1.1 -7.3 restriction endonuclease subunit S compare
IAI47_10160 -1.1 -2.7 AAA family ATPase compare
IAI47_02605 -1.1 -6.7 protease modulator HflC compare
IAI47_10025 -1.1 -3.8 DUF1792 domain-containing protein compare
IAI47_15150 -1.1 -6.4 DUF3289 family protein compare
IAI47_11410 -1.1 -6.3 hypothetical protein compare
IAI47_03820 -1.1 -2.3 site-specific tyrosine recombinase XerD compare
IAI47_04865 -1.1 -1.5 SoxR-reducing system protein RseC compare
IAI47_08555 -1.1 -5.2 tail fiber assembly protein compare
IAI47_06425 -1.1 -6.0 GNAT family N-acetyltransferase compare
IAI47_05690 -1.1 -3.0 hypothetical protein compare
IAI47_20255 -1.1 -4.2 alpha/beta fold hydrolase compare
IAI47_16810 -1.1 -6.1 hypothetical protein compare
IAI47_07520 -1.0 -5.7 MobA/MobL family protein compare
IAI47_01545 -1.0 -4.1 cell division ATP-binding protein FtsE compare
IAI47_09305 -1.0 -2.1 cyclic di-GMP phosphodiesterase compare
IAI47_19825 -1.0 -3.3 EAL domain-containing protein compare
IAI47_20970 -1.0 -5.1 alpha/beta hydrolase compare
IAI47_09955 -1.0 -1.3 SDR family oxidoreductase compare
IAI47_01780 -1.0 -1.5 Fe-S biogenesis protein NfuA compare
IAI47_21780 -1.0 -2.4 hypothetical protein compare
IAI47_12885 -1.0 -5.0 pyruvate formate lyase 1-activating protein compare
IAI47_21600 -1.0 -2.1 EamA family transporter compare
IAI47_00500 -1.0 -6.3 ATP-dependent DNA helicase RecG compare
IAI47_07525 -1.0 -1.6 conjugal transfer protein TraD compare
IAI47_03195 -1.0 -2.6 cell division protein FtsP compare
IAI47_10545 -1.0 -1.4 hypothetical protein compare
IAI47_00835 -1.0 -1.8 cell division protein ZapB compare
IAI47_04695 -1.0 -2.5 hypothetical protein compare
IAI47_08090 -1.0 -2.4 hypothetical protein compare
IAI47_20440 -1.0 -2.4 SDR family oxidoreductase compare
IAI47_09380 -1.0 -3.0 peptide ABC transporter substrate-binding protein SapA compare
IAI47_17645 -1.0 -3.0 hypothetical protein compare
IAI47_02260 -1.0 -4.6 Zn(2+)-responsive transcriptional regulator compare
IAI47_08635 -1.0 -2.6 multidrug/spermidine efflux SMR transporter subunit MdtI compare
IAI47_07515 -1.0 -2.2 hypothetical protein compare
IAI47_02600 -1.0 -6.0 FtsH protease activity modulator HflK compare
IAI47_19890 -1.0 -1.1 hypothetical protein compare
IAI47_11545 -1.0 -2.5 hypothetical protein compare
IAI47_19950 -1.0 -3.8 SDR family oxidoreductase compare
IAI47_18410 -1.0 -3.1 diaminopimelate epimerase compare
IAI47_12340 -1.0 -4.8 outer membrane lipoprotein carrier protein LolA compare
IAI47_17560 -1.0 -0.9 ROK family transcriptional regulator compare
IAI47_10590 -1.0 -2.5 translesion error-prone DNA polymerase V autoproteolytic subunit compare
IAI47_09865 -1.0 -3.9 SDR family oxidoreductase compare
IAI47_03680 -1.0 -5.3 transketolase compare
IAI47_15670 -1.0 -6.0 acyltransferase family protein compare
IAI47_06030 -1.0 -2.7 hypothetical protein compare
IAI47_15350 -1.0 -6.3 endonuclease/exonuclease/phosphatase family protein compare
IAI47_09980 -1.0 -2.8 VOC family protein compare
IAI47_15415 -1.0 -3.2 aminoacyl-tRNA hydrolase compare
IAI47_10850 -1.0 -4.5 L,D-transpeptidase family protein compare
IAI47_12270 -0.9 -3.6 YceK/YidQ family lipoprotein compare
IAI47_14525 -0.9 -3.6 50S ribosomal protein L36 compare
IAI47_09050 -0.9 -4.4 thymidine kinase compare
IAI47_02100 -0.9 -7.3 bacterioferritin compare
IAI47_02850 -0.9 -4.5 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
IAI47_00875 -0.9 -1.5 met regulon transcriptional regulator MetJ compare
IAI47_09965 -0.9 -3.6 NUDIX domain-containing protein compare
IAI47_07490 -0.9 -1.3 DNA-binding protein compare
IAI47_08590 -0.9 -1.0 hypothetical protein compare
IAI47_05460 -0.9 -3.2 DUF3820 family protein compare
IAI47_09915 -0.9 -5.2 M24 family metallopeptidase compare
IAI47_02265 -0.9 -3.8 alternative ribosome-rescue factor A compare
IAI47_03125 -0.9 -6.5 glutathionylspermidine synthase family protein compare
IAI47_06595 -0.9 -1.6 hypothetical protein compare
IAI47_10565 -0.9 -0.6 DUF4113 domain-containing protein compare
IAI47_15970 -0.9 -1.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_21530 -0.9 -3.3 FeoA domain-containing protein compare
IAI47_19940 -0.9 -1.7 hypothetical protein compare
IAI47_17815 -0.9 -7.3 excinuclease ABC subunit UvrA compare
IAI47_21670 -0.9 -3.5 LuxR family transcriptional regulator compare
IAI47_08230 -0.9 -5.8 PTS glucose transporter subunit IIA compare
IAI47_16670 -0.9 -3.2 stress protein compare
IAI47_21100 -0.9 -3.4 helix-turn-helix transcriptional regulator compare
IAI47_12880 -0.9 -6.5 formate C-acetyltransferase compare
IAI47_03865 -0.9 -1.7 PTS lactose/cellobiose transporter subunit IIA compare
IAI47_21790 -0.9 -3.1 helix-turn-helix domain-containing protein compare
IAI47_11870 -0.9 -1.6 DUF2767 family protein compare
IAI47_07955 -0.9 -1.4 protein DsrB compare


Specific Phenotypes

For 17 genes in this experiment

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 across organisms