Experiment set7IT005 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Chromium(III) Chloride Hexahydrate 0.000390625 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4187 -4.1 -2.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3261 -3.7 -5.0 hypothetical protein compare
Pf6N2E2_3282 -3.3 -2.3 FIG005080: Possible exported protein compare
Pf6N2E2_3264 -3.2 -3.1 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4352 -3.1 -3.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4416 -2.9 -3.9 Tyrosine recombinase XerC compare
Pf6N2E2_3461 -2.9 -1.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5727 -2.7 -7.7 FIG00955360: hypothetical protein compare
Pf6N2E2_2218 -2.7 -5.6 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2633 -2.7 -3.2 Nitroreductase family protein compare
Pf6N2E2_6140 -2.6 -1.7 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_3753 -2.4 -13.3 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_2940 -2.4 -6.1 OmpA family protein compare
Pf6N2E2_204 -2.4 -2.4 hypothetical protein compare
Pf6N2E2_2756 -2.3 -7.9 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_5316 -2.2 -2.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2217 -2.1 -4.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_156 -2.1 -2.2 Carbon storage regulator compare
Pf6N2E2_5841 -2.1 -1.9 GlcG protein compare
Pf6N2E2_2753 -2.0 -2.7 HtrA protease/chaperone protein compare
Pf6N2E2_5006 -2.0 -6.5 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3516 -2.0 -3.0 Probable transmembrane protein compare
Pf6N2E2_5430 -2.0 -7.2 Transglycosylase, Slt family compare
Pf6N2E2_3607 -2.0 -7.2 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_4204 -1.9 -1.8 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_2706 -1.9 -3.1 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_5001 -1.9 -1.8 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_4418 -1.9 -1.5 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_5555 -1.9 -2.1 Cold shock protein CspA compare
Pf6N2E2_5014 -1.8 -1.9 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_2605 -1.8 -4.8 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_5155 -1.7 -3.1 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_3661 -1.7 -5.7 hypothetical protein compare
Pf6N2E2_4632 -1.7 -9.9 Amine oxidase [flavin-containing] (EC 1.4.3.4) compare
Pf6N2E2_5103 -1.6 -1.6 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_865 -1.6 -2.4 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_3841 -1.6 -5.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_4369 -1.6 -2.1 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3271 -1.6 -2.7 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_3826 -1.5 -4.7 Nitrogen regulation protein NR(I) compare
Pf6N2E2_4153 -1.4 -1.6 Sensory box histidine kinase compare
Pf6N2E2_5571 -1.4 -1.8 hypothetical protein compare
Pf6N2E2_3033 -1.4 -2.0 hypothetical protein compare
Pf6N2E2_2852 -1.4 -6.6 GGDEF domain/EAL domain protein compare
Pf6N2E2_2934 -1.4 -2.9 lipoprotein, putative compare
Pf6N2E2_5252 -1.4 -1.2 FIG00956396: hypothetical protein compare
Pf6N2E2_3515 -1.4 -5.0 Probable transmembrane protein compare
Pf6N2E2_3514 -1.4 -2.5 Ribosomal protein L11 methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_4803 -1.4 -1.5 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3062 -1.4 -3.6 Membrane-associated zinc metalloprotease compare
Pf6N2E2_4417 -1.3 -2.9 Protein of unknown function DUF484 compare
Pf6N2E2_1502 -1.3 -1.8 Two-component system regulatory protein compare
Pf6N2E2_1248 -1.3 -1.8 MutT/nudix family protein compare
Pf6N2E2_3060 -1.3 -1.5 Outer membrane protein H precursor compare
Pf6N2E2_4974 -1.3 -5.2 DedA protein compare
Pf6N2E2_2646 -1.3 -1.9 FIG00953416: hypothetical protein compare
Pf6N2E2_1176 -1.3 -3.3 Mll2356 protein compare
Pf6N2E2_5178 -1.3 -1.7 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_1027 -1.3 -3.1 Cysteine dioxygenase (EC 1.13.11.20) compare
Pf6N2E2_4999 -1.3 -4.4 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_4797 -1.3 -1.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_3326 -1.3 -1.6 hypothetical protein compare
Pf6N2E2_4273 -1.3 -4.6 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_5476 -1.3 -1.7 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_3908 -1.3 -5.4 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3134 -1.2 -1.1 hypothetical protein compare
Pf6N2E2_88 -1.2 -2.2 hypothetical protein compare
Pf6N2E2_2459 -1.2 -2.4 Organic hydroperoxide resistance protein compare
Pf6N2E2_1340 -1.2 -2.1 major pilin protein fimA compare
Pf6N2E2_3665 -1.2 -0.9 serine/threonine protein kinase compare
Pf6N2E2_3744 -1.1 -2.1 General secretion pathway protein F compare
Pf6N2E2_746 -1.1 -1.4 FIG00958097: hypothetical protein compare
Pf6N2E2_3770 -1.1 -1.9 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_3039 -1.1 -4.9 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_1434 -1.1 -2.4 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_75 -1.1 -2.4 Colicin V production protein compare
Pf6N2E2_6057 -1.1 -2.5 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_3260 -1.1 -3.8 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_4928 -1.1 -1.0 Permeases of the major facilitator superfamily compare
Pf6N2E2_4611 -1.1 -2.6 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_1782 -1.1 -2.1 STAS domain protein compare
Pf6N2E2_4454 -1.1 -3.6 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_4996 -1.0 -2.4 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_1972 -1.0 -2.0 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_4638 -1.0 -2.7 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_1463 -1.0 -1.5 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_6065 -1.0 -2.0 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_5733 -1.0 -3.7 NLP/P60 family protein compare
Pf6N2E2_2675 -1.0 -1.1 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_4636 -1.0 -4.9 periplasmic binding protein, putative compare
Pf6N2E2_420 -1.0 -1.1 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_4155 -1.0 -6.2 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_4993 -1.0 -1.8 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_504 -0.9 -2.0 DNA-binding response regulator compare
Pf6N2E2_70 -0.9 -2.1 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_229 -0.9 -1.9 Putative fumarylacetoacetate (FAA) hydrolase compare
Pf6N2E2_1783 -0.9 -1.8 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_5609 -0.9 -3.3 DNA-binding response regulator ColR compare
Pf6N2E2_5242 -0.9 -1.3 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3786 -0.9 -3.0 Twin-arginine translocation protein TatC compare
Pf6N2E2_1545 -0.9 -2.5 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_1441 -0.9 -2.1 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_4059 -0.9 -0.9 DNA-binding protein HU-alpha compare
Pf6N2E2_734 -0.9 -1.6 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_1043 -0.9 -2.9 Transcriptional regulator, IclR family compare
Pf6N2E2_3292 -0.9 -3.3 K+-dependent Na+/Ca+ exchanger related-protein compare
Pf6N2E2_2444 -0.9 -3.2 Glutathione peroxidase family protein compare
Pf6N2E2_2480 -0.9 -1.6 FIG00957636: hypothetical protein compare
Pf6N2E2_2428 -0.9 -2.1 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_3373 -0.9 -0.8 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_4761 -0.9 -5.5 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_5536 -0.9 -1.2 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4843 -0.9 -3.4 FIG00956941: hypothetical protein compare
Pf6N2E2_315 -0.9 -2.3 probable transmembrane protein compare
Pf6N2E2_5869 -0.9 -2.0 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_619 -0.9 -2.7 Exonuclease SbcD compare
Pf6N2E2_5111 -0.9 -2.1 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_4591 -0.8 -2.8 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) compare
Pf6N2E2_3588 -0.8 -2.3 hypothetical protein compare
Pf6N2E2_5679 -0.8 -3.2 hypothetical protein compare
Pf6N2E2_3279 -0.8 -2.5 FIG138315: Putative alpha helix protein compare
Pf6N2E2_2266 -0.8 -2.3 Copper-sensing two-component system response regulator CusR compare
Pf6N2E2_5677 -0.8 -1.0 Carbon storage regulator compare
Pf6N2E2_5468 -0.8 -2.2 Nudix hydrolase family protein PA3470 compare
Pf6N2E2_3138 -0.8 -2.6 YaeQ protein compare
Pf6N2E2_5846 -0.8 -5.6 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_5845 -0.8 -3.9 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_4205 -0.8 -2.5 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_4359 -0.8 -2.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4276 -0.8 -2.3 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_1156 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_1199 -0.8 -2.3 hypothetical protein compare
Pf6N2E2_4743 -0.8 -0.9 hypothetical protein compare
Pf6N2E2_5327 -0.8 -3.8 Outer membrane protein assembly factor YaeT precursor compare
Pf6N2E2_2479 -0.8 -2.3 Transcription elongation factor GreB compare
Pf6N2E2_4708 -0.8 -1.9 hypothetical protein compare
Pf6N2E2_3351 -0.8 -2.5 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_5453 -0.8 -2.6 hypothetical protein compare
Pf6N2E2_988 -0.8 -2.0 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) compare
Pf6N2E2_2189 -0.8 -2.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2340 -0.8 -2.5 Transcriptional regulator, GntR family compare
Pf6N2E2_4197 -0.8 -4.0 DNA recombination and repair protein RecF compare
Pf6N2E2_5340 -0.8 -2.5 Stringent starvation protein A compare
Pf6N2E2_3537 -0.8 -3.0 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_967 -0.8 -2.7 DNA repair protein RadC compare
Pf6N2E2_2835 -0.8 -1.3 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_3533 -0.8 -1.9 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_4963 -0.8 -1.1 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_586 -0.8 -4.1 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) compare
Pf6N2E2_5771 -0.8 -3.9 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_4061 -0.8 -3.0 Rubredoxin compare
Pf6N2E2_1317 -0.8 -1.9 P-hydroxyphenylacetate hydroxylase C2:oxygenase component compare
Pf6N2E2_3257 -0.8 -2.1 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_4479 -0.8 -2.1 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_1032 -0.8 -0.8 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_291 -0.7 -2.0 ATP-dependent Clp protease adaptor protein ClpS compare
Pf6N2E2_3349 -0.7 -1.6 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_1490 -0.7 -1.8 hypothetical protein compare
Pf6N2E2_2139 -0.7 -2.0 Paraquat-inducible protein A compare
Pf6N2E2_5182 -0.7 -4.2 Paraquat-inducible protein A compare
Pf6N2E2_4362 -0.7 -1.3 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_1596 -0.7 -1.2 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_1905 -0.7 -2.5 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_5728 -0.7 -2.1 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_5821 -0.7 -3.3 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf6N2E2_664 -0.7 -1.0 Acetoin catabolism protein X compare
Pf6N2E2_43 -0.7 -3.1 Histidine permease YuiF compare
Pf6N2E2_5742 -0.7 -3.0 Cobyric acid synthase (EC 6.3.5.10) compare
Pf6N2E2_3839 -0.7 -1.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_1974 -0.7 -1.9 FIG141694: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_3460 -0.7 -1.0 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5773 -0.7 -2.7 Transcriptional regulator, Cro/CI family compare
Pf6N2E2_5171 -0.7 -5.5 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_5840 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_3941 -0.7 -1.3 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_1305 -0.7 -1.8 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_2606 -0.7 -2.6 hypothetical protein compare
Pf6N2E2_178 -0.7 -0.8 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_2472 -0.7 -2.5 hypothetical protein compare
Pf6N2E2_4531 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_405 -0.7 -1.3 hypothetical protein compare
Pf6N2E2_3277 -0.7 -1.6 FagA protein compare
Pf6N2E2_2201 -0.7 -2.1 Transmembrane regulator protein PrtR compare
Pf6N2E2_288 -0.7 -1.4 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_4072 -0.7 -2.1 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_2325 -0.7 -3.0 Recombination protein RecR compare
Pf6N2E2_2285 -0.7 -0.9 FIG00954079: hypothetical protein compare
Pf6N2E2_4399 -0.7 -2.7 GGDEF domain/EAL domain protein compare
Pf6N2E2_3969 -0.7 -0.6 Membrane-fusion protein compare
Pf6N2E2_5160 -0.7 -1.3 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_1863 -0.7 -2.7 putative dioxygenase hydroxylase component compare
Pf6N2E2_754 -0.7 -1.2 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_5950 -0.7 -2.2 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_2092 -0.7 -2.9 Cytochrome c5 compare
Pf6N2E2_3130 -0.7 -2.1 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf6N2E2_1682 -0.7 -1.9 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_6058 -0.7 -2.7 FIG139976: hypothetical protein compare
Pf6N2E2_4804 -0.7 -2.1 ApaG protein compare
Pf6N2E2_5740 -0.7 -2.6 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_4392 -0.7 -1.2 Translation initiation inhibitor compare


Specific Phenotypes

For 2 genes in this experiment

For stress Chromium(III) Chloride Hexahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Chromium(III) Chloride Hexahydrate across organisms