Experiment set7IT003 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Manganese (II) chloride tetrahydrate 0.00078125 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3248 -6.7 -4.6 Probable transmembrane protein compare
Pf6N2E2_4071 -5.2 -5.0 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_5036 -5.1 -8.6 Cobalt-zinc-cadmium resistance protein compare
Pf6N2E2_5679 -5.0 -4.9 hypothetical protein compare
Pf6N2E2_3264 -4.4 -3.0 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3826 -4.4 -6.7 Nitrogen regulation protein NR(I) compare
Pf6N2E2_3908 -4.2 -5.7 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_4797 -3.9 -2.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_5711 -3.7 -7.1 tRNA(Cytosine32)-2-thiocytidine synthetase compare
Pf6N2E2_724 -3.6 -2.3 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_4391 -3.5 -7.5 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_4416 -3.3 -3.9 Tyrosine recombinase XerC compare
Pf6N2E2_4974 -3.3 -8.0 DedA protein compare
Pf6N2E2_4072 -3.2 -4.9 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_3351 -3.2 -6.4 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4074 -3.1 -14.3 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_5252 -3.1 -2.9 FIG00956396: hypothetical protein compare
Pf6N2E2_3820 -3.0 -3.3 hypothetical protein compare
Pf6N2E2_5746 -3.0 -2.8 Cobalamin synthase compare
Pf6N2E2_5430 -2.9 -9.7 Transglycosylase, Slt family compare
Pf6N2E2_6047 -2.8 -2.5 hypothetical protein compare
Pf6N2E2_4987 -2.7 -1.8 MaoC-like domain protein compare
Pf6N2E2_3096 -2.7 -1.7 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_4352 -2.6 -4.3 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3825 -2.6 -5.7 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_3534 -2.6 -3.1 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_3261 -2.5 -3.8 hypothetical protein compare
Pf6N2E2_178 -2.5 -1.6 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_773 -2.4 -7.0 Undecaprenyl-diphosphatase (EC 3.6.1.27) compare
Pf6N2E2_453 -2.3 -2.6 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_621 -2.2 -6.7 TPR domain protein in aerotolerance operon compare
Pf6N2E2_3079 -2.2 -6.4 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA compare
Pf6N2E2_4612 -2.1 -5.4 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_5508 -2.1 -2.8 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_3661 -2.1 -7.2 hypothetical protein compare
Pf6N2E2_613 -2.1 -1.9 lipoprotein, putative compare
Pf6N2E2_302 -2.0 -5.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_620 -1.9 -7.0 BatD compare
Pf6N2E2_2068 -1.9 -7.2 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf6N2E2_4638 -1.9 -4.2 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_4059 -1.9 -1.5 DNA-binding protein HU-alpha compare
Pf6N2E2_4372 -1.9 -5.4 FIG00460773: hypothetical protein compare
Pf6N2E2_4454 -1.9 -5.9 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_4162 -1.9 -3.5 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_2065 -1.8 -3.4 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_5738 -1.8 -7.1 Cobyrinic acid A,C-diamide synthase compare
Pf6N2E2_5768 -1.8 -3.2 DNA recombination-dependent growth factor C compare
Pf6N2E2_5155 -1.8 -3.3 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_3477 -1.7 -2.3 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_3537 -1.7 -3.0 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_1014 -1.7 -1.5 Nitrate/nitrite transporter compare
Pf6N2E2_3656 -1.7 -7.0 Probable transcription regulator Mig-14 compare
Pf6N2E2_4733 -1.7 -2.0 hypothetical protein compare
Pf6N2E2_3134 -1.7 -1.3 hypothetical protein compare
Pf6N2E2_2487 -1.7 -1.3 FIG00956090: hypothetical protein compare
Pf6N2E2_625 -1.7 -4.5 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_6090 -1.7 -2.4 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_3461 -1.7 -1.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_1636 -1.6 -6.8 Ferrichrome-iron receptor compare
Pf6N2E2_3282 -1.6 -2.4 FIG005080: Possible exported protein compare
Pf6N2E2_2074 -1.6 -1.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_74 -1.6 -2.0 DedD protein compare
Pf6N2E2_5816 -1.6 -1.6 Smr domain protein compare
Pf6N2E2_3532 -1.6 -4.5 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) compare
Pf6N2E2_5740 -1.5 -4.9 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_3535 -1.5 -5.2 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf6N2E2_2064 -1.5 -3.4 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_624 -1.5 -4.5 hypothetical protein PA3071 compare
Pf6N2E2_4139 -1.5 -9.7 Integral membrane protein TerC compare
Pf6N2E2_3655 -1.5 -9.2 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_3460 -1.5 -2.1 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2071 -1.5 -1.7 hypothetical protein compare
Pf6N2E2_5741 -1.5 -4.1 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) compare
Pf6N2E2_89 -1.5 -2.3 hypothetical protein compare
Pf6N2E2_2480 -1.5 -2.0 FIG00957636: hypothetical protein compare
Pf6N2E2_3658 -1.4 -5.4 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2277 -1.4 -2.4 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_923 -1.4 -2.4 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_1625 -1.4 -1.9 Ferric reductase (1.6.99.14) compare
Pf6N2E2_5943 -1.4 -1.4 hypothetical protein compare
Pf6N2E2_525 -1.4 -3.8 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_2296 -1.4 -2.7 FIG00954767: hypothetical protein compare
Pf6N2E2_4075 -1.4 -4.3 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_3531 -1.4 -4.0 Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_5001 -1.4 -1.8 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_5742 -1.3 -4.8 Cobyric acid synthase (EC 6.3.5.10) compare
Pf6N2E2_1176 -1.3 -2.9 Mll2356 protein compare
Pf6N2E2_1545 -1.3 -3.9 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_987 -1.3 -1.7 hypothetical protein compare
Pf6N2E2_3062 -1.3 -3.6 Membrane-associated zinc metalloprotease compare
Pf6N2E2_622 -1.3 -3.5 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_3659 -1.3 -6.4 Protein fixF compare
Pf6N2E2_350 -1.3 -2.1 Gfa-like protein compare
Pf6N2E2_2059 -1.3 -2.6 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_3634 -1.3 -1.7 Transporter compare
Pf6N2E2_5027 -1.3 -7.9 AMP nucleosidase (EC 3.2.2.4) compare
Pf6N2E2_3876 -1.3 -4.3 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_3255 -1.3 -3.5 YrbA protein compare
Pf6N2E2_2281 -1.2 -2.0 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_5573 -1.2 -2.8 Glycerol-3-phosphate regulon repressor, DeoR family compare
Pf6N2E2_4087 -1.2 -4.8 L-asparaginase (EC 3.5.1.1) (from data) compare
Pf6N2E2_2536 -1.2 -1.6 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_5944 -1.2 -4.0 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_5743 -1.2 -2.7 Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
Pf6N2E2_2501 -1.2 -2.4 hypothetical protein compare
Pf6N2E2_3206 -1.2 -1.3 hypothetical protein compare
Pf6N2E2_2636 -1.2 -2.5 FIG027190: Putative transmembrane protein compare
Pf6N2E2_4708 -1.2 -2.6 hypothetical protein compare
Pf6N2E2_2513 -1.2 -3.0 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_547 -1.2 -2.3 Phophatidylinositol-4-phosphate 5-kinase (EC 2.7.1.68) compare
Pf6N2E2_5841 -1.2 -1.3 GlcG protein compare
Pf6N2E2_4673 -1.1 -2.4 ATP-dependent 23S rRNA helicase DbpA compare
Pf6N2E2_2103 -1.1 -1.7 hypothetical protein compare
Pf6N2E2_1215 -1.1 -2.1 probable membrane protein YPO2362 compare
Pf6N2E2_2073 -1.1 -4.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_6055 -1.1 -3.6 Homoserine kinase (EC 2.7.1.39) compare
Pf6N2E2_3081 -1.1 -3.4 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf6N2E2_5261 -1.1 -1.1 FIG00956983: hypothetical protein compare
Pf6N2E2_5207 -1.1 -1.2 hypothetical protein compare
Pf6N2E2_4388 -1.1 -6.7 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf6N2E2_2605 -1.1 -3.5 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_945 -1.1 -1.9 Transcriptional regulator, TetR family compare
Pf6N2E2_4601 -1.1 -2.0 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_5006 -1.1 -4.5 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2060 -1.1 -6.0 CobN component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_2038 -1.1 -2.5 Transcriptional regulator, TetR family compare
Pf6N2E2_3326 -1.1 -1.3 hypothetical protein compare
Pf6N2E2_5175 -1.1 -7.0 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Pf6N2E2_84 -1.1 -1.7 hypothetical protein compare
Pf6N2E2_5560 -1.1 -2.7 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf6N2E2_3349 -1.0 -2.2 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_3536 -1.0 -4.6 Cobalt-precorrin-6 synthase, anaerobic compare
Pf6N2E2_649 -1.0 -1.4 General secretion pathway protein L compare
Pf6N2E2_687 -1.0 -1.5 4-oxalocrotonate tautomerase (EC 5.3.2.-) compare
Pf6N2E2_1635 -1.0 -3.0 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_2533 -1.0 -5.7 Rhodanese domain protein UPF0176 compare
Pf6N2E2_1089 -1.0 -1.7 Delta 1-piperideine-2-carboxylate reductase (EC 1.5.1.21) / Delta 1-pyrroline-2-carboxylate reductase (EC 1.5.1.1) compare
Pf6N2E2_4216 -1.0 -3.1 Transcriptional regulator of glmS gene, DeoR family compare
Pf6N2E2_3847 -1.0 -2.5 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_1043 -1.0 -2.3 Transcriptional regulator, IclR family compare
Pf6N2E2_3533 -1.0 -2.1 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_5739 -1.0 -1.0 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_4963 -1.0 -1.4 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_2264 -1.0 -2.8 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_4764 -1.0 -3.9 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_4168 -1.0 -3.1 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf6N2E2_1452 -1.0 -2.6 hypothetical protein compare
Pf6N2E2_1774 -1.0 -0.7 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_4153 -1.0 -1.2 Sensory box histidine kinase compare
Pf6N2E2_4390 -1.0 -4.6 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_1492 -0.9 -2.2 No significant database matches compare
Pf6N2E2_1195 -0.9 -2.7 hypothetical protein compare
Pf6N2E2_4954 -0.9 -4.6 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) compare
Pf6N2E2_2201 -0.9 -2.2 Transmembrane regulator protein PrtR compare
Pf6N2E2_2218 -0.9 -2.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5728 -0.9 -2.7 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_5665 -0.9 -5.5 Succinylornithine transaminase (EC 2.6.1.81) compare
Pf6N2E2_375 -0.9 -2.9 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_3906 -0.9 -5.7 Transcription accessory protein (S1 RNA-binding domain) compare
Pf6N2E2_1617 -0.9 -0.9 COG2199: FOG: GGDEF domain compare
Pf6N2E2_2425 -0.9 -1.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4273 -0.9 -4.0 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_395 -0.9 -2.4 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_6035 -0.9 -1.2 alpha/beta hydrolase fold compare
Pf6N2E2_102 -0.9 -3.3 sigma-54 dependent transcriptional regulator compare
Pf6N2E2_2835 -0.9 -2.0 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_3004 -0.9 -1.8 Prophage baseplate assembly protein V compare
Pf6N2E2_1758 -0.9 -1.1 Transcriptional regulator, MarR family compare
Pf6N2E2_2448 -0.9 -2.5 Thiopurine S-methyltransferase (EC 2.1.1.67) compare
Pf6N2E2_447 -0.9 -3.2 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_664 -0.9 -1.5 Acetoin catabolism protein X compare
Pf6N2E2_5785 -0.9 -1.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3517 -0.9 -2.4 tRNA dihydrouridine synthase B (EC 1.-.-.-) compare
Pf6N2E2_440 -0.9 -2.0 FIG00954920: hypothetical protein compare
Pf6N2E2_1027 -0.9 -2.2 Cysteine dioxygenase (EC 1.13.11.20) compare
Pf6N2E2_5723 -0.9 -5.4 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_5993 -0.9 -1.2 FIG00957412: hypothetical protein compare
Pf6N2E2_2518 -0.9 -1.5 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_4415 -0.9 -1.0 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_4205 -0.9 -2.1 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2853 -0.9 -5.0 Iron-regulated protein A precursor compare
Pf6N2E2_5745 -0.9 -3.1 Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) compare
Pf6N2E2_5676 -0.9 -2.6 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_4747 -0.8 -2.0 Transmembrane sensor compare
Pf6N2E2_3947 -0.8 -1.0 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_4661 -0.8 -1.9 KluA regulatory protein compare
Pf6N2E2_2969 -0.8 -4.9 Peptide chain release factor RF-3 compare
Pf6N2E2_869 -0.8 -2.4 FMN oxidoreductase compare
Pf6N2E2_5176 -0.8 -3.8 Acetolactate synthase small subunit (EC 2.2.1.6) compare
Pf6N2E2_1317 -0.8 -2.1 P-hydroxyphenylacetate hydroxylase C2:oxygenase component compare
Pf6N2E2_1323 -0.8 -1.4 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_5340 -0.8 -1.7 Stringent starvation protein A compare
Pf6N2E2_1720 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_1525 -0.8 -2.3 Universal stress protein family 5 compare
Pf6N2E2_6045 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_1293 -0.8 -1.4 COG2879, Hypothetical small protein yjiX compare
Pf6N2E2_1074 -0.8 -1.4 FIG00953356: hypothetical protein compare
Pf6N2E2_4165 -0.8 -3.6 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf6N2E2_1337 -0.8 -2.2 Cys regulon transcriptional activator CysB compare
Pf6N2E2_5183 -0.8 -5.4 Paraquat-inducible protein B compare


Specific Phenotypes

For 4 genes in this experiment

For stress Manganese (II) chloride tetrahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Manganese (II) chloride tetrahydrate across organisms