Experiment set7IT003 for Caulobacter crescentus NA1000

Compare to:

PYE 4C

Group: temperature
Media: PYE
Culturing: Caulo_ML2, tube, Aerobic, at 4 (C), shaken=25 rpm
By: Sneha on 8-Aug-18
Media components: 2 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.8 mM Magnesium sulfate, 0.5 mM Calcium chloride

Specific Phenotypes

For 11 genes in this experiment

SEED Subsystems

Subsystem #Specific
DNA repair, UvrABC system 1
Lysine Biosynthesis DAP Pathway 1
Threonine and Homoserine Biosynthesis 1
Two cell division clusters relating to chromosome partitioning 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
pseudouridine degradation 2 1 1
L-homoserine biosynthesis 3 3 1
urate conversion to allantoin I 3 2 1
urate conversion to allantoin II 3 1 1
urate conversion to allantoin III 3 1 1
dipicolinate biosynthesis 4 3 1
spermidine biosynthesis II 4 2 1
L-methionine biosynthesis IV 4 2 1
ectoine biosynthesis 5 2 1
superpathway of L-threonine biosynthesis 6 6 1
norspermidine biosynthesis 6 2 1
L-lysine biosynthesis VI 7 6 1
L-lysine biosynthesis III 7 6 1
ureide biosynthesis 7 5 1
3-dehydroquinate biosynthesis II (archaea) 7 3 1
cremeomycin biosynthesis 7 2 1
superpathway of L-homoserine and L-methionine biosynthesis 8 6 1
grixazone biosynthesis 8 2 1
superpathway of polyamine biosynthesis III 8 2 1
L-lysine biosynthesis I 9 9 1
superpathway of S-adenosyl-L-methionine biosynthesis 9 7 1
L-lysine biosynthesis II 9 7 1
superpathway of L-methionine biosynthesis (transsulfuration) 9 7 1
superpathway of L-methionine biosynthesis (by sulfhydrylation) 12 12 1
chorismate biosynthesis II (archaea) 12 8 1
superpathway of L-isoleucine biosynthesis I 13 13 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis II 15 13 1
superpathway of L-lysine, L-threonine and L-methionine biosynthesis I 18 16 1
superpathway of purines degradation in plants 18 12 1
aspartate superpathway 25 23 1
platensimycin biosynthesis 26 6 1