Experiment set7H9 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 defined media with Vancomycin Hydrochloride Hydrate 0.008 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_0279 -5.5 -5.4 methionine biosynthesis protein MetW compare
Psest_3322 -5.5 -15.4 TIGR02099 family protein compare
Psest_3384 -5.3 -6.3 glutamate 5-kinase compare
Psest_0952 -5.3 -3.6 Uncharacterized conserved protein compare
Psest_2590 -5.3 -2.4 3-isopropylmalate dehydratase, small subunit compare
Psest_2591 -5.3 -3.6 3-isopropylmalate dehydratase, large subunit compare
Psest_3648 -5.3 -3.6 anthranilate phosphoribosyltransferase compare
Psest_0153 -5.2 -10.6 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3866 -5.1 -13.2 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0508 -5.1 -6.9 gamma-glutamyl phosphate reductase compare
Psest_3647 -5.0 -6.9 Indole-3-glycerol phosphate synthase compare
Psest_2584 -5.0 -5.9 Phosphoribosylanthranilate isomerase compare
Psest_0325 -5.0 -16.8 Putative threonine efflux protein compare
Psest_2579 -5.0 -5.9 amidophosphoribosyltransferase compare
Psest_3226 -4.9 -2.2 Predicted membrane protein compare
Psest_0152 -4.9 -6.7 Imidazoleglycerol-phosphate dehydratase compare
Psest_2578 -4.8 -13.6 O-succinylhomoserine sulfhydrylase compare
Psest_0326 -4.7 -14.5 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_3864 -4.7 -11.7 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3299 -4.7 -11.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3298 -4.6 -9.9 histidinol dehydrogenase compare
Psest_3650 -4.6 -10.6 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0062 -4.4 -8.0 tryptophan synthase, alpha subunit compare
Psest_0954 -4.4 -12.2 Fe-S oxidoreductase compare
Psest_3944 -4.4 -3.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_1295 -4.2 -8.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0013 -4.2 -5.7 Lauroyl/myristoyl acyltransferase compare
Psest_0280 -4.2 -13.8 homoserine O-acetyltransferase compare
Psest_3159 -4.1 -9.2 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2589 -4.1 -12.8 3-isopropylmalate dehydrogenase compare
Psest_1772 -4.0 -5.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2945 -4.0 -2.7 septum site-determining protein MinC compare
Psest_0953 -3.9 -11.8 iron-sulfur cluster-binding protein compare
Psest_0155 -3.9 -5.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_1473 -3.9 -10.1 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3649 -3.9 -9.1 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1452 -3.9 -7.4 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_1037 -3.8 -4.4 acetolactate synthase, small subunit compare
Psest_0718 -3.7 -5.1 nicotinate-nucleotide pyrophosphorylase compare
Psest_0687 -3.7 -9.4 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0063 -3.7 -6.6 tryptophan synthase, beta subunit compare
Psest_1474 -3.6 -3.5 phosphoribosylaminoimidazole synthetase compare
Psest_1013 -3.6 -3.5 phosphoribosylamine--glycine ligase compare
Psest_3810 -3.6 -2.4 orotate phosphoribosyltransferase compare
Psest_0489 -3.6 -2.4 phosphoserine phosphatase SerB compare
Psest_2946 -3.5 -6.6 septum site-determining protein MinD compare
Psest_1509 -3.4 -7.9 quinolinate synthetase complex, A subunit compare
Psest_1837 -3.4 -11.4 Endoglucanase compare
Psest_0411 -3.3 -11.4 biotin synthetase compare
Psest_3496 -3.3 -2.2 Predicted metal-binding protein compare
Psest_3297 -3.2 -12.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_4084 -3.2 -15.9 oxaloacetate decarboxylase alpha subunit compare
Psest_3123 -3.2 -5.6 dihydroorotase, homodimeric type compare
Psest_3818 -3.0 -7.4 endoribonuclease L-PSP, putative compare
Psest_3092 -3.0 -3.5 ribonuclease III, bacterial compare
Psest_3943 -2.9 -2.8 Phosphoribosyl-AMP cyclohydrolase compare
Psest_4085 -2.9 -14.0 Biotin carboxylase compare
Psest_2358 -2.8 -1.9 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1947 -2.7 -1.9 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_2329 -2.7 -16.5 Transcriptional regulator compare
Psest_2316 -2.7 -14.5 phosphoenolpyruvate synthase compare
Psest_0466 -2.7 -5.1 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2719 -2.7 -5.3 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_1012 -2.7 -6.8 Signal transduction histidine kinase compare
Psest_2988 -2.5 -7.0 aspartate kinase, monofunctional class compare
Psest_2088 -2.5 -4.3 Uncharacterized protein conserved in bacteria compare
Psest_0413 -2.4 -7.7 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0477 -2.4 -12.5 thiamine biosynthesis protein ThiC compare
Psest_0313 -2.4 -3.5 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_4103 -2.3 -1.9 AraC-type DNA-binding domain-containing proteins compare
Psest_4086 -2.3 -9.3 Transcriptional regulator compare
Psest_0442 -2.3 -7.0 ATPases of the AAA+ class compare
Psest_0536 -2.3 -3.7 thiamine-phosphate pyrophosphorylase compare
Psest_0306 -2.2 -13.9 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_1814 -2.2 -15.3 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0412 -2.1 -10.7 8-amino-7-oxononanoate synthase compare
Psest_0267 -2.1 -10.7 Uncharacterized enzyme of thiazole biosynthesis compare
Psest_2104 -2.1 -3.6 IscR-regulated protein YhgI compare
Psest_1115 -2.0 -2.3 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_2944 -2.0 -2.7 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_1804 -2.0 -3.7 Superfamily II DNA and RNA helicases compare
Psest_0218 -2.0 -3.5 Acyl-CoA hydrolase compare
Psest_1031 -2.0 -7.8 Uncharacterized protein conserved in bacteria compare
Psest_3236 -2.0 -4.2 hypothetical protein compare
Psest_3721 -2.0 -6.4 Malic enzyme compare
Psest_2447 -2.0 -1.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0266 -1.9 -7.3 thiamine biosynthesis protein ThiS compare
Psest_1496 -1.9 -2.6 Holliday junction DNA helicase, RuvA subunit compare
Psest_0414 -1.9 -4.6 biotin biosynthesis protein BioC compare
Psest_3464 -1.8 -7.9 Signal transduction histidine kinase compare
Psest_0951 -1.8 -10.1 FAD/FMN-containing dehydrogenases compare
Psest_1686 -1.8 -5.8 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1640 -1.8 -9.4 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_2708 -1.8 -11.1 transaldolase compare
Psest_0514 -1.7 -6.8 lytic murein transglycosylase B compare
Psest_3128 -1.7 -5.2 Protein-disulfide isomerase compare
Psest_0170 -1.7 -5.5 5,10-methenyltetrahydrofolate synthetase compare
Psest_4049 -1.7 -2.0 hypothetical protein compare
Psest_3910 -1.7 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_0415 -1.6 -3.3 dethiobiotin synthase compare
Psest_3565 -1.6 -2.0 hypothetical protein compare
Psest_2637 -1.6 -2.0 putative methyltransferase, YaeB/AF_0241 family compare
Psest_2581 -1.6 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_3101 -1.5 -11.5 L-aspartate oxidase compare
Psest_2855 -1.5 -1.3 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1527 -1.5 -9.6 Na+/proline symporter compare
Psest_0292 -1.5 -3.1 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_2991 -1.5 -6.1 hypothetical protein compare
Psest_0719 -1.4 -5.3 Uncharacterized protein conserved in bacteria compare
Psest_1510 -1.4 -4.1 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0955 -1.4 -3.2 D,L-lactate:H+ symporter (from data) compare
Psest_3084 -1.4 -2.2 methyltransferase, putative compare
Psest_1167 -1.4 -1.3 hypothetical protein compare
Psest_3478 -1.4 -1.4 Cytochrome B561 compare
Psest_1704 -1.4 -2.2 Dehydrogenases (flavoproteins) compare
Psest_4323 -1.4 -8.6 Predicted acyltransferases compare
Psest_3884 -1.4 -0.8 Signal transduction histidine kinase compare
Psest_3323 -1.4 -4.5 ribonuclease, Rne/Rng family compare
Psest_4099 -1.3 -8.4 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component conserved
Psest_3373 -1.3 -6.1 Tfp pilus assembly protein PilX compare
Psest_0515 -1.3 -3.5 rare lipoprotein A compare
Psest_0212 -1.3 -1.5 exodeoxyribonuclease V, gamma subunit compare
Psest_1511 -1.3 -3.7 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0507 -1.3 -4.8 Uncharacterized membrane-associated protein compare
Psest_0744 -1.3 -1.1 Uncharacterized conserved protein compare
Psest_3449 -1.3 -1.0 DJ-1 family protein compare
Psest_3230 -1.3 -5.2 Uncharacterized conserved protein compare
Psest_0673 -1.3 -3.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_2646 -1.3 -3.1 SOS regulatory protein LexA compare
Psest_2090 -1.2 -1.7 Protein of unknown function (DUF2970). compare
Psest_3338 -1.2 -1.9 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_1132 -1.2 -5.1 mutator mutT protein compare
Psest_2864 -1.2 -4.0 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3732 -1.2 -4.9 polyphosphate kinase 1 compare
Psest_0740 -1.2 -2.0 Transcriptional regulator compare
Psest_0259 -1.2 -1.5 cell division ATP-binding protein FtsE compare
Psest_3270 -1.2 -2.3 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_3664 -1.2 -1.3 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_0327 -1.2 -5.3 Transcriptional regulator compare
Psest_3020 -1.2 -4.7 Cell wall-associated hydrolases (invasion-associated proteins) compare
Psest_3113 -1.2 -2.0 electron transport complex, RnfABCDGE type, B subunit compare
Psest_0277 -1.1 -1.6 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_1292 -1.1 -5.9 monothiol glutaredoxin, Grx4 family compare
Psest_0346 -1.1 -2.5 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_0284 -1.1 -6.7 pyridoxal phosphate enzyme, YggS family compare
Psest_0165 -1.1 -3.0 protein-export chaperone SecB compare
Psest_1230 -1.1 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_0298 -1.1 -4.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_4247 -1.1 -2.0 Serine/threonine protein phosphatase compare
Psest_3998 -1.1 -4.2 glutamate--cysteine ligase compare
Psest_1886 -1.1 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_2070 -1.1 -5.3 FOG: LysM repeat conserved
Psest_3351 -1.1 -3.9 peptide chain release factor 3 compare
Psest_1540 -1.1 -1.0 biotin-dependent carboxylase uncharacterized domain compare
Psest_3883 -1.1 -3.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3840 -1.0 -2.7 D-lactate/glycolate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_2632 -1.0 -3.6 ribosomal protein S12 methylthiotransferase RimO compare
Psest_0161 -1.0 -1.2 Membrane-bound metallopeptidase compare
Psest_2650 -1.0 -2.8 hypothetical protein compare
Psest_1242 -1.0 -2.4 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_3905 -1.0 -2.6 formate dehydrogenase, alpha subunit, archaeal-type compare
Psest_0192 -1.0 -5.2 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4287 -1.0 -3.8 Predicted glutamine amidotransferases compare
Psest_3546 -1.0 -1.0 Phosphatidylglycerophosphatase A and related proteins compare
Psest_0294 -1.0 -2.5 Putative transcriptional regulator compare
Psest_4191 -1.0 -1.2 Transcriptional regulator compare
Psest_0485 -1.0 -2.1 clan AA aspartic protease, TIGR02281 family compare
Psest_3371 -1.0 -5.8 type IV pilus modification protein PilV compare
Psest_0172 -1.0 -3.7 Uncharacterized protein conserved in bacteria compare
Psest_3372 -1.0 -6.1 Tfp pilus assembly protein PilW compare
Psest_4371 -1.0 -1.8 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_0378 -1.0 -0.9 Lactate dehydrogenase and related dehydrogenases compare
Psest_2629 -0.9 -2.0 Flp pilus assembly protein, pilin Flp compare
Psest_3767 -0.9 -2.8 tyrosine recombinase XerC compare
Psest_1111 -0.9 -2.5 Flp pilus assembly protein TadD, contains TPR repeats compare
Psest_0845 -0.9 -0.8 hypothetical protein compare
Psest_2711 -0.9 -1.6 PilZ domain. compare
Psest_3979 -0.9 -1.9 Fructose-2,6-bisphosphatase compare
Psest_3899 -0.9 -2.1 Predicted phosphoribosyltransferases compare
Psest_0498 -0.9 -1.5 ribosome small subunit-dependent GTPase A compare
Psest_2976 -0.9 -1.7 hypothetical protein compare
Psest_1070 -0.9 -1.6 Predicted membrane protein compare
Psest_4405 -0.9 -1.0 hypothetical protein compare
Psest_2630 -0.9 -2.2 hypothetical protein compare
Psest_0312 -0.9 -2.9 Superfamily II DNA and RNA helicases compare
Psest_1622 -0.9 -2.8 hypothetical protein compare
Psest_2304 -0.9 -1.4 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1691 -0.9 -2.4 aminodeoxychorismate lyase compare
Psest_0958 -0.9 -5.0 Oligoketide cyclase/lipid transport protein compare
Psest_3784 -0.9 -1.6 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_3692 -0.9 -1.7 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_3937 -0.9 -1.1 ATP-dependent protease HslVU, ATPase subunit compare
Psest_0867 -0.9 -1.2 hypothetical protein compare
Psest_2935 -0.9 -4.0 hypothetical protein compare
Psest_0175 -0.9 -3.9 Xaa-Pro aminopeptidase compare
Psest_0186 -0.9 -2.5 Protein-disulfide isomerase compare
Psest_3477 -0.9 -1.8 Signal transduction histidine kinase compare
Psest_4315 -0.9 -1.7 ABC-type metal ion transport system, permease component compare
Psest_1921 -0.9 -2.0 Protein of unknown function (DUF2797). compare
Psest_1610 -0.9 -2.2 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For stress Vancomycin Hydrochloride Hydrate in Pseudomonas stutzeri RCH2

For stress Vancomycin Hydrochloride Hydrate across organisms