Experiment set7H8 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 defined media

200 most important genes:

  gene name fitness t score description  
Psest_1473 -6.2 -8.4 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0152 -5.9 -5.7 Imidazoleglycerol-phosphate dehydratase compare
Psest_3647 -5.8 -5.7 Indole-3-glycerol phosphate synthase compare
Psest_0153 -5.7 -12.1 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3650 -5.7 -7.8 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3864 -5.7 -10.2 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_2591 -5.6 -3.9 3-isopropylmalate dehydratase, large subunit compare
Psest_2584 -5.6 -6.6 Phosphoribosylanthranilate isomerase compare
Psest_0508 -5.5 -7.5 gamma-glutamyl phosphate reductase compare
Psest_0279 -5.5 -6.5 methionine biosynthesis protein MetW compare
Psest_3866 -5.4 -15.2 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3384 -5.2 -8.7 glutamate 5-kinase compare
Psest_0325 -5.2 -15.4 Putative threonine efflux protein compare
Psest_3648 -5.2 -6.2 anthranilate phosphoribosyltransferase compare
Psest_0155 -5.2 -6.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_2579 -5.1 -7.7 amidophosphoribosyltransferase compare
Psest_3226 -5.1 -2.5 Predicted membrane protein compare
Psest_0326 -5.1 -16.2 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_2578 -5.0 -15.7 O-succinylhomoserine sulfhydrylase compare
Psest_2589 -4.9 -13.8 3-isopropylmalate dehydrogenase compare
Psest_3299 -4.9 -12.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0954 -4.8 -13.5 Fe-S oxidoreductase compare
Psest_0280 -4.8 -14.3 homoserine O-acetyltransferase compare
Psest_3944 -4.7 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3298 -4.7 -10.9 histidinol dehydrogenase compare
Psest_0062 -4.6 -9.8 tryptophan synthase, alpha subunit compare
Psest_3159 -4.6 -8.7 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1295 -4.5 -8.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0953 -4.5 -12.3 iron-sulfur cluster-binding protein compare
Psest_0063 -4.5 -5.3 tryptophan synthase, beta subunit compare
Psest_1509 -4.4 -13.4 quinolinate synthetase complex, A subunit compare
Psest_3649 -4.3 -10.4 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0687 -4.1 -10.0 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2590 -4.1 -2.8 3-isopropylmalate dehydratase, small subunit compare
Psest_1474 -4.0 -3.9 phosphoribosylaminoimidazole synthetase compare
Psest_0489 -3.8 -2.6 phosphoserine phosphatase SerB compare
Psest_1452 -3.8 -10.6 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_1013 -3.8 -4.5 phosphoribosylamine--glycine ligase compare
Psest_3818 -3.6 -8.7 endoribonuclease L-PSP, putative compare
Psest_0718 -3.6 -5.9 nicotinate-nucleotide pyrophosphorylase compare
Psest_3810 -3.5 -3.4 orotate phosphoribosyltransferase compare
Psest_0952 -3.5 -5.0 Uncharacterized conserved protein compare
Psest_4084 -3.3 -17.9 oxaloacetate decarboxylase alpha subunit compare
Psest_3123 -3.2 -6.4 dihydroorotase, homodimeric type compare
Psest_2104 -3.2 -4.3 IscR-regulated protein YhgI compare
Psest_4085 -3.1 -16.8 Biotin carboxylase compare
Psest_0411 -3.0 -12.2 biotin synthetase compare
Psest_1947 -3.0 -2.0 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_3910 -2.9 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_1772 -2.9 -7.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3297 -2.8 -12.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_3943 -2.8 -3.8 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0313 -2.8 -3.8 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_1704 -2.8 -3.7 Dehydrogenases (flavoproteins) compare
Psest_1686 -2.8 -7.6 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1037 -2.7 -4.5 acetolactate synthase, small subunit compare
Psest_4086 -2.6 -12.5 Transcriptional regulator compare
Psest_2988 -2.6 -9.1 aspartate kinase, monofunctional class compare
Psest_1115 -2.5 -5.5 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_0212 -2.5 -1.7 exodeoxyribonuclease V, gamma subunit compare
Psest_3721 -2.5 -9.6 Malic enzyme compare
Psest_2329 -2.4 -17.4 Transcriptional regulator compare
Psest_0414 -2.4 -6.0 biotin biosynthesis protein BioC compare
Psest_0413 -2.3 -8.9 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0267 -2.3 -12.7 Uncharacterized enzyme of thiazole biosynthesis compare
Psest_0306 -2.3 -15.3 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_0415 -2.2 -6.0 dethiobiotin synthase compare
Psest_0412 -2.2 -11.7 8-amino-7-oxononanoate synthase compare
Psest_0955 -2.1 -6.0 D,L-lactate:H+ symporter (from data) compare
Psest_2088 -2.1 -4.7 Uncharacterized protein conserved in bacteria compare
Psest_0951 -2.1 -11.2 FAD/FMN-containing dehydrogenases compare
Psest_0266 -2.1 -7.1 thiamine biosynthesis protein ThiS compare
Psest_1031 -2.0 -8.9 Uncharacterized protein conserved in bacteria compare
Psest_0477 -2.0 -12.2 thiamine biosynthesis protein ThiC compare
Psest_0999 -2.0 -4.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0536 -2.0 -4.4 thiamine-phosphate pyrophosphorylase compare
Psest_3092 -1.8 -3.3 ribonuclease III, bacterial compare
Psest_2316 -1.8 -12.4 phosphoenolpyruvate synthase compare
Psest_1012 -1.8 -5.3 Signal transduction histidine kinase compare
Psest_2946 -1.7 -6.2 septum site-determining protein MinD compare
Psest_0498 -1.7 -2.3 ribosome small subunit-dependent GTPase A compare
Psest_0537 -1.7 -1.9 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_2585 -1.6 -2.2 pseudouridylate synthase I compare
Psest_0442 -1.6 -6.7 ATPases of the AAA+ class compare
Psest_2532 -1.4 -3.7 Uncharacterized protein conserved in bacteria compare
Psest_2719 -1.4 -4.4 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_1640 -1.4 -9.1 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_3998 -1.4 -5.4 glutamate--cysteine ligase compare
Psest_1496 -1.3 -2.5 Holliday junction DNA helicase, RuvA subunit compare
Psest_2786 -1.3 -2.0 Domain of unknown function (DUF3597). compare
Psest_1292 -1.3 -7.3 monothiol glutaredoxin, Grx4 family compare
Psest_3101 -1.2 -10.2 L-aspartate oxidase compare
Psest_3762 -1.2 -3.9 iron donor protein CyaY compare
Psest_1511 -1.2 -4.6 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0722 -1.2 -6.2 Predicted ATPase compare
Psest_3377 -1.2 -1.7 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_4310 -1.2 -1.5 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_0327 -1.1 -4.5 Transcriptional regulator compare
Psest_1804 -1.1 -2.8 Superfamily II DNA and RNA helicases compare
Psest_2983 -1.1 -3.7 hypothetical protein compare
Psest_3784 -1.1 -2.0 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_0259 -1.1 -2.1 cell division ATP-binding protein FtsE compare
Psest_0958 -1.1 -6.7 Oligoketide cyclase/lipid transport protein compare
Psest_0292 -1.1 -2.4 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_0378 -1.0 -1.2 Lactate dehydrogenase and related dehydrogenases compare
Psest_3550 -1.0 -1.8 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_2864 -1.0 -3.8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2531 -1.0 -7.8 cytochrome c oxidase accessory protein FixG compare
Psest_0346 -1.0 -2.7 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_0170 -1.0 -4.1 5,10-methenyltetrahydrofolate synthetase compare
Psest_0719 -1.0 -4.9 Uncharacterized protein conserved in bacteria compare
Psest_0277 -1.0 -1.6 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_1527 -0.9 -7.2 Na+/proline symporter compare
Psest_2667 -0.9 -2.2 Uncharacterized protein involved in propionate catabolism compare
Psest_2090 -0.9 -2.7 Protein of unknown function (DUF2970). compare
Psest_3456 -0.9 -1.2 RNA polymerase sigma factor, sigma-70 family compare
Psest_1144 -0.9 -1.9 AmpG-related permease compare
Psest_2714 -0.9 -2.1 7-cyano-7-deazaguanine reductase compare
Psest_3766 -0.9 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_3767 -0.9 -3.1 tyrosine recombinase XerC compare
Psest_1029 -0.9 -2.6 Regulator of competence-specific genes compare
Psest_3938 -0.9 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_2333 -0.8 -1.5 Protein of unknown function (DUF3359). compare
Psest_0284 -0.8 -6.4 pyridoxal phosphate enzyme, YggS family compare
Psest_0359 -0.8 -1.8 Transcriptional regulators compare
Psest_2646 -0.8 -1.9 SOS regulatory protein LexA compare
Psest_2945 -0.8 -1.5 septum site-determining protein MinC compare
Psest_3988 -0.8 -4.5 phosphoenolpyruvate carboxykinase (ATP) compare
Psest_3338 -0.8 -1.5 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_3711 -0.8 -6.3 Glutamate synthase domain 2 compare
Psest_1149 -0.8 -2.6 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_1582 -0.8 -2.5 Protein of unknown function (DUF3087). compare
Psest_4098 -0.8 -1.7 Superfamily I DNA and RNA helicases compare
Psest_2862 -0.8 -4.6 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_3927 -0.8 -2.5 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_2327 -0.8 -4.3 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_2757 -0.7 -1.6 hypothetical protein compare
Psest_3128 -0.7 -3.9 Protein-disulfide isomerase compare
Psest_2114 -0.7 -3.3 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_1870 -0.7 -0.9 Transcriptional regulators compare
Psest_1204 -0.7 -1.8 Transcriptional regulators compare
Psest_4177 -0.7 -1.5 flagellar biosynthetic protein FliP compare
Psest_3322 -0.7 -6.3 TIGR02099 family protein compare
Psest_1814 -0.7 -5.8 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3710 -0.7 -5.5 glutamate synthase small subunit family protein, proteobacterial compare
Psest_2566 -0.7 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_3231 -0.7 -2.3 hypothetical protein compare
Psest_2923 -0.7 -0.8 hypothetical protein compare
Psest_4363 -0.7 -4.1 ATPases involved in chromosome partitioning compare
Psest_3351 -0.7 -3.0 peptide chain release factor 3 compare
Psest_2650 -0.7 -1.8 hypothetical protein compare
Psest_3494 -0.7 -1.1 hypothetical protein compare
Psest_1444 -0.7 -2.4 Curli production assembly/transport component CsgF. compare
Psest_3047 -0.6 -0.9 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_3843 -0.6 -4.3 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_2238 -0.6 -2.1 hypothetical protein compare
Psest_0161 -0.6 -1.7 Membrane-bound metallopeptidase compare
Psest_0837 -0.6 -1.9 Putative lipid carrier protein compare
Psest_2000 -0.6 -3.7 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1659 -0.6 -2.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_3399 -0.6 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_2561 -0.6 -1.0 hypothetical protein compare
Psest_1277 -0.6 -4.5 2-isopropylmalate synthase, yeast type compare
Psest_1963 -0.6 -2.2 Peptidase inhibitor I78 family. compare
Psest_2907 -0.6 -1.4 Protein of unknown function (DUF3618). compare
Psest_4303 -0.6 -0.7 HEAT repeat. compare
Psest_1626 -0.6 -1.9 Predicted integral membrane protein compare
Psest_0100 -0.6 -1.2 phosphonate ABC transporter, ATP-binding protein compare
Psest_1132 -0.6 -2.2 mutator mutT protein compare
Psest_0390 -0.6 -1.0 Short-chain dehydrogenases of various substrate specificities compare
Psest_2887 -0.6 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_2218 -0.6 -1.6 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_1424 -0.6 -1.0 Lipoate-protein ligase A compare
Psest_3139 -0.6 -2.4 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily compare
Psest_0842 -0.6 -0.9 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_3670 -0.6 -4.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_0154 -0.6 -1.7 Uncharacterized conserved protein compare
Psest_3178 -0.6 -1.3 formyltetrahydrofolate deformylase compare
Psest_4249 -0.6 -2.5 Rhs element Vgr protein compare
Psest_0175 -0.6 -3.0 Xaa-Pro aminopeptidase compare
Psest_0349 -0.6 -3.1 DNA polymerase III, alpha subunit (gram-positive type) compare
Psest_3323 -0.6 -2.4 ribonuclease, Rne/Rng family compare
Psest_0309 -0.6 -0.7 RND family efflux transporter, MFP subunit compare
Psest_0515 -0.6 -2.5 rare lipoprotein A compare
Psest_3022 -0.6 -2.3 Predicted membrane protein compare
Psest_4010 -0.6 -1.0 peroxiredoxin, OsmC subfamily compare
Psest_0796 -0.6 -1.8 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_3702 -0.6 -1.4 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase compare
Psest_4003 -0.6 -2.4 TIGR00153 family protein compare
Psest_3236 -0.6 -2.1 hypothetical protein compare
Psest_0709 -0.5 -3.9 pseudouridine synthase, RluA family compare
Psest_2527 -0.5 -3.5 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_4390 -0.5 -2.4 hypothetical protein compare
Psest_3113 -0.5 -1.3 electron transport complex, RnfABCDGE type, B subunit compare
Psest_2020 -0.5 -2.2 Uncharacterized protein involved in purine metabolism compare
Psest_0862 -0.5 -1.4 Glycosidases compare
Psest_1643 -0.5 -0.8 hypothetical protein compare
Psest_2126 -0.5 -1.8 Transcriptional regulators compare
Psest_2423 -0.5 -2.2 Uncharacterized conserved protein compare
Psest_1920 -0.5 -0.7 Uncharacterized protein conserved in bacteria compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in carbon source experiments