Experiment set7H8 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 defined media

200 most detrimental genes:

  gene name fitness t score description  
Psest_0401 +1.7 2.7 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_0538 +1.6 15.4 Signal transduction histidine kinase compare
Psest_1635 +1.3 12.5 Signal transduction histidine kinase compare
Psest_2260 +1.1 10.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3895 +1.1 3.2 hypothetical protein compare
Psest_2025 +1.1 2.7 cold shock domain protein CspD compare
Psest_3100 +1.1 7.6 RNA polymerase sigma factor RpoE compare
Psest_0030 +1.0 2.7 Putative NADH-flavin reductase compare
Psest_3828 +0.9 0.9 zinc-binding alcohol dehydrogenase family protein compare
Psest_0078 +0.9 1.6 hypothetical protein compare
Psest_0511 +0.9 2.3 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_0209 +0.9 1.2 membrane protein AbrB duplication compare
Psest_1725 +0.9 7.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2357 +0.8 2.2 Short-chain dehydrogenases of various substrate specificities compare
Psest_3700 +0.8 0.6 hypothetical protein compare
Psest_0097 +0.8 0.9 phosphonates metabolism transcriptional regulator PhnF compare
Psest_3480 +0.8 1.3 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_1907 +0.8 1.2 hypothetical protein compare
Psest_0031 +0.8 1.3 Uncharacterized conserved protein compare
Psest_2150 +0.8 2.2 DNA polymerase LigD, polymerase domain compare
Psest_4298 +0.8 1.1 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_2457 +0.8 2.7 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_3777 +0.7 2.7 diguanylate cyclase (GGDEF) domain compare
Psest_1840 +0.7 6.9 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_4049 +0.7 1.9 hypothetical protein compare
Psest_3002 +0.7 1.4 Putative translation initiation inhibitor, yjgF family compare
Psest_2764 +0.7 1.3 hypothetical protein compare
Psest_0061 +0.7 2.0 hypothetical protein compare
Psest_2460 +0.7 1.7 hypothetical protein compare
Psest_3936 +0.7 1.8 ATP-dependent protease HslVU, peptidase subunit compare
Psest_3693 +0.7 1.2 Glycosyltransferases involved in cell wall biogenesis compare
Psest_4274 +0.7 2.4 hypothetical protein compare
Psest_1315 +0.7 1.7 hypothetical protein compare
Psest_1326 +0.7 2.4 Uncharacterized conserved protein compare
Psest_2067 +0.7 1.6 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0103 +0.6 1.5 triphosphoribosyl-dephospho-CoA synthase MdcB compare
Psest_1082 +0.6 1.6 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3014 +0.6 1.1 cob(I)alamin adenosyltransferase compare
Psest_3296 +0.6 2.9 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_0095 +0.6 1.4 phosphonate C-P lyase system protein PhnH compare
Psest_3064 +0.6 2.8 hypothetical protein compare
Psest_1215 +0.6 1.7 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_4078 +0.6 2.2 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_0861 +0.6 2.2 hypothetical protein compare
Psest_0737 +0.6 0.7 Cu(I)-responsive transcriptional regulator compare
Psest_4056 +0.6 1.6 FMN reductase, SsuE family compare
Psest_4406 +0.6 1.1 hypothetical protein compare
Psest_2359 +0.6 2.3 Predicted permeases compare
Psest_0575 +0.6 0.8 HrpA-like helicases compare
Psest_3476 +0.6 1.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0257 +0.6 1.6 Predicted Zn-dependent peptidases compare
Psest_0311 +0.6 2.6 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_3816 +0.6 1.0 DNA-directed RNA polymerase, omega subunit compare
Psest_4108 +0.6 2.1 seryl-tRNA(sec) selenium transferase compare
Psest_1463 +0.6 1.2 SufE protein probably involved in Fe-S center assembly compare
Psest_0609 +0.6 1.8 hypothetical protein compare
Psest_0717 +0.6 5.0 Protein of unknown function (DUF1631). compare
Psest_2066 +0.6 2.4 ABC-type uncharacterized transport system, permease component compare
Psest_3990 +0.6 3.3 PAP2 superfamily. compare
Psest_0357 +0.6 1.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2718 +0.6 1.0 hypothetical protein compare
Psest_2232 +0.5 4.6 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_4335 +0.5 1.5 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_1750 +0.5 2.2 Protein of unknown function (DUF2802). compare
Psest_1366 +0.5 0.6 hypothetical protein compare
Psest_0203 +0.5 2.7 Signal transduction histidine kinase compare
Psest_1161 +0.5 1.8 E3 Ubiquitin ligase. compare
Psest_2173 +0.5 2.2 competence/damage-inducible protein CinA C-terminal domain compare
Psest_3903 +0.5 2.7 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_0215 +0.5 2.2 hypothetical protein compare
Psest_0445 +0.5 4.3 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0066 +0.5 1.0 Protein of unknown function (DUF3060). compare
Psest_0316 +0.5 0.9 Cytochrome c556 compare
Psest_0652 +0.5 1.2 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_1540 +0.5 0.7 biotin-dependent carboxylase uncharacterized domain compare
Psest_3453 +0.5 1.7 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_3792 +0.5 1.4 Putative translation initiation inhibitor, yjgF family compare
Psest_1390 +0.5 1.6 Uncharacterized ABC-type transport system, permease component compare
Psest_0922 +0.5 2.2 alkylhydroperoxidase AhpD family core domain compare
Psest_2123 +0.5 1.1 fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data) compare
Psest_1069 +0.5 2.9 Protease II compare
Psest_0389 +0.5 1.2 hypothetical protein compare
Psest_2448 +0.5 1.8 AraC-type DNA-binding domain-containing proteins compare
Psest_4211 +0.5 1.2 conserverd hypothetical protein compare
Psest_2775 +0.5 2.6 Glycerol-3-phosphate dehydrogenase compare
Psest_0106 +0.5 1.9 malonate decarboxylase, gamma subunit compare
Psest_4021 +0.5 2.8 hypothetical protein compare
Psest_0243 +0.5 0.7 hypothetical protein compare
Psest_4382 +0.5 4.3 hypothetical protein compare
Psest_0193 +0.5 0.7 conserved hypothetical protein compare
Psest_2964 +0.5 3.0 flagellar basal-body rod protein FlgF compare
Psest_3707 +0.5 1.6 Transcriptional regulator compare
Psest_1293 +0.5 0.7 VanZ like family. compare
Psest_0393 +0.5 2.9 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1008 +0.5 1.0 hypothetical protein compare
Psest_1912 +0.5 1.7 Protein of unknown function (DUF1260). compare
Psest_2962 +0.5 3.3 Flagellar basal body L-ring protein compare
Psest_0681 +0.5 2.9 DNA mismatch repair protein MutL compare
Psest_0114 +0.5 1.2 RNA polymerase sigma factor, sigma-70 family compare
Psest_4256 +0.5 0.8 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0850 +0.5 2.7 glucokinase, proteobacterial type compare
Psest_3883 +0.5 2.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2365 +0.5 1.9 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_1361 +0.4 2.2 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_0382 +0.4 3.1 Uncharacterized iron-regulated membrane protein compare
Psest_2141 +0.4 2.4 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_0395 +0.4 3.1 His Kinase A (phosphoacceptor) domain./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_1999 +0.4 0.8 pseudouridine synthase compare
Psest_2980 +0.4 3.9 oxaloacetate decarboxylase alpha subunit compare
Psest_1378 +0.4 2.3 hypothetical protein compare
Psest_3902 +0.4 1.2 hypothetical protein compare
Psest_1823 +0.4 3.6 Nucleoside-diphosphate-sugar epimerases compare
Psest_1951 +0.4 1.1 Uncharacterized protein conserved in bacteria compare
Psest_2626 +0.4 1.4 Flp pilus assembly protein CpaB compare
Psest_1655 +0.4 2.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_1663 +0.4 1.4 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_3651 +0.4 2.1 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_3958 +0.4 1.7 Predicted Fe-S-cluster oxidoreductase compare
Psest_3400 +0.4 1.0 Copper resistance protein D. compare
Psest_1652 +0.4 2.3 Protein of unknown function (DUF2803). compare
Psest_3501 +0.4 2.0 Deacetylases, including yeast histone deacetylase and acetoin utilization protein compare
Psest_2120 +0.4 0.9 Transcriptional regulator compare
Psest_2963 +0.4 3.5 flagellar basal-body rod protein FlgG, Gram-negative bacteria compare
Psest_3991 +0.4 1.0 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_1317 +0.4 1.6 phosphonate ABC transporter, permease protein PhnE compare
Psest_1721 +0.4 1.9 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_1376 +0.4 2.6 hypothetical protein compare
Psest_3490 +0.4 1.2 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_0410 +0.4 1.8 Predicted amidophosphoribosyltransferases compare
Psest_0119 +0.4 1.0 hypothetical protein compare
Psest_3826 +0.4 1.9 Uncharacterized conserved protein compare
Psest_1510 +0.4 1.8 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3479 +0.4 1.3 molybdenum cofactor synthesis domain compare
Psest_3189 +0.4 1.4 hypothetical protein compare
Psest_2961 +0.4 2.2 Flagellar basal-body P-ring protein compare
Psest_2806 +0.4 3.1 RNA polymerase sigma factor RpoS compare
Psest_1576 +0.4 2.2 Periplasmic glucans biosynthesis protein compare
Psest_0028 +0.4 1.2 Coproporphyrinogen III oxidase compare
Psest_2965 +0.4 3.8 fagellar hook-basal body proteins compare
Psest_3013 +0.4 0.9 cobyrinic acid a,c-diamide synthase compare
Psest_3364 +0.4 2.1 putative efflux protein, MATE family compare
Psest_1453 +0.4 2.5 Glycerol-3-phosphate dehydrogenase compare
Psest_1924 +0.4 3.5 adhesin-associated MmpL efflux pump (from data) compare
Psest_3545 +0.4 1.4 clan AA aspartic protease, TIGR02281 family compare
Psest_4102 +0.4 1.1 peroxiredoxin, Ohr subfamily compare
Psest_0108 +0.4 2.0 malonate decarboxylase, epsilon subunit compare
Psest_1722 +0.4 2.9 flagellar protein export ATPase FliI compare
Psest_3865 +0.4 1.5 Predicted integral membrane protein (DUF2269). compare
Psest_3010 +0.4 2.0 cobalamin biosynthesis protein CobD compare
Psest_3881 +0.4 0.7 hypothetical protein compare
Psest_1383 +0.4 1.9 DNA topoisomerase III, bacteria and conjugative plasmid compare
Psest_0088 +0.4 2.0 phosphonate metabolism protein PhnP compare
Psest_1313 +0.4 0.8 Uncharacterized conserved small protein compare
Psest_2671 +0.4 1.1 Transcriptional regulator compare
Psest_4196 +0.4 1.0 Type II secretory pathway, component PulK compare
Psest_1459 +0.4 1.2 hypothetical protein compare
Psest_0574 +0.4 2.0 hypothetical protein compare
Psest_3838 +0.4 1.3 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_1371 +0.4 1.9 hypothetical protein compare
Psest_2416 +0.4 2.2 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) compare
Psest_2756 +0.4 0.7 hypothetical protein compare
Psest_0658 +0.4 2.2 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_4008 +0.4 3.0 PAS domain S-box compare
Psest_0735 +0.4 2.1 bacterioferritin compare
Psest_2960 +0.4 2.5 flagellar rod assembly protein/muramidase FlgJ compare
Psest_0394 +0.4 2.1 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain compare
Psest_0285 +0.4 2.7 pilus retraction protein PilT compare
Psest_4221 +0.4 1.4 homoserine kinase, Neisseria type compare
Psest_0407 +0.4 1.5 Dioxygenases related to 2-nitropropane dioxygenase compare
Psest_0093 +0.4 0.9 Uncharacterized enzyme of phosphonate metabolism compare
Psest_4082 +0.4 1.2 hypothetical protein compare
Psest_0831 +0.4 0.5 hypothetical protein compare
Psest_0024 +0.4 2.3 LysM domain. compare
Psest_1817 +0.4 2.1 hypothetical protein compare
Psest_1601 +0.4 0.9 Signal transduction histidine kinase compare
Psest_1904 +0.4 1.7 Arabinose efflux permease compare
Psest_2726 +0.4 1.0 Rhodanese-related sulfurtransferase compare
Psest_0046 +0.4 2.0 Uncharacterized protein conserved in bacteria compare
Psest_1816 +0.4 2.2 hypothetical protein compare
Psest_1074 +0.4 1.9 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component compare
Psest_0848 +0.4 1.3 hypothetical protein compare
Psest_0693 +0.4 3.3 His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_2268 +0.4 1.5 Alcohol dehydrogenase, class IV compare
Psest_0484 +0.4 1.6 hypothetical protein compare
Psest_0381 +0.4 1.9 hypothetical protein compare
Psest_3824 +0.4 0.9 Predicted membrane protein compare
Psest_3950 +0.4 1.9 D-tyrosyl-tRNA(Tyr) deacylase compare
Psest_0542 +0.4 2.1 AMP nucleosidase compare
Psest_3203 +0.4 1.9 hypothetical protein compare
Psest_3823 +0.4 1.2 hypothetical protein compare
Psest_1980 +0.4 1.6 Uncharacterized conserved protein compare
Psest_3515 +0.4 1.8 Na+-dependent transporters of the SNF family compare
Psest_3155 +0.3 2.0 hypothetical protein compare
Psest_2971 +0.3 2.2 flagella basal body P-ring formation protein FlgA compare
Psest_0186 +0.3 1.4 Protein-disulfide isomerase compare
Psest_1809 +0.3 2.9 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_0822 +0.3 1.3 Transcriptional regulators compare
Psest_2968 +0.3 2.7 flagellar basal-body rod protein FlgB compare
Psest_2280 +0.3 1.7 Predicted membrane protein compare
Psest_3452 +0.3 1.6 Zn-dependent hydrolases, including glyoxylases compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in carbon source experiments