Experiment set7H5 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 defined media with Fusidic acid sodium salt 0.064 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_0153 -5.8 -9.7 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0152 -5.4 -6.5 Imidazoleglycerol-phosphate dehydratase compare
Psest_3648 -5.2 -5.1 anthranilate phosphoribosyltransferase compare
Psest_3226 -5.0 -2.4 Predicted membrane protein compare
Psest_0155 -4.8 -5.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_2579 -4.8 -7.9 amidophosphoribosyltransferase compare
Psest_3647 -4.7 -7.9 Indole-3-glycerol phosphate synthase compare
Psest_2584 -4.7 -9.5 Phosphoribosylanthranilate isomerase compare
Psest_3650 -4.6 -11.6 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3298 -4.6 -11.4 histidinol dehydrogenase compare
Psest_3944 -4.5 -3.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3299 -4.5 -14.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3866 -4.4 -17.9 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0952 -4.4 -5.1 Uncharacterized conserved protein compare
Psest_0326 -4.3 -16.8 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0063 -4.2 -5.8 tryptophan synthase, beta subunit compare
Psest_0325 -4.2 -15.6 Putative threonine efflux protein compare
Psest_1452 -4.1 -7.5 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_1473 -4.1 -10.6 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_2578 -4.1 -15.3 O-succinylhomoserine sulfhydrylase compare
Psest_3864 -4.1 -14.3 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0279 -4.1 -7.8 methionine biosynthesis protein MetW compare
Psest_0954 -4.0 -10.7 Fe-S oxidoreductase compare
Psest_0687 -4.0 -9.6 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2590 -3.9 -2.6 3-isopropylmalate dehydratase, small subunit compare
Psest_1295 -3.8 -9.4 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3159 -3.7 -11.4 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0062 -3.7 -10.2 tryptophan synthase, alpha subunit compare
Psest_2589 -3.7 -14.2 3-isopropylmalate dehydrogenase compare
Psest_0280 -3.7 -14.0 homoserine O-acetyltransferase compare
Psest_1474 -3.7 -4.4 phosphoribosylaminoimidazole synthetase compare
Psest_2591 -3.6 -5.5 3-isopropylmalate dehydratase, large subunit compare
Psest_1509 -3.5 -12.1 quinolinate synthetase complex, A subunit compare
Psest_0953 -3.4 -12.6 iron-sulfur cluster-binding protein compare
Psest_3123 -3.3 -5.8 dihydroorotase, homodimeric type compare
Psest_0310 -3.3 -2.2 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_1510 -3.3 -5.4 Putative Zn-dependent protease, contains TPR repeats compare
Psest_1013 -3.2 -5.6 phosphoribosylamine--glycine ligase compare
Psest_0508 -3.1 -10.1 gamma-glutamyl phosphate reductase compare
Psest_0359 -3.0 -3.5 Transcriptional regulators compare
Psest_0867 -2.9 -2.6 hypothetical protein compare
Psest_1037 -2.9 -4.8 acetolactate synthase, small subunit compare
Psest_1012 -2.9 -7.1 Signal transduction histidine kinase compare
Psest_1947 -2.8 -1.9 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_3384 -2.7 -9.4 glutamate 5-kinase compare
Psest_2946 -2.7 -6.7 septum site-determining protein MinD compare
Psest_3649 -2.7 -10.1 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_4219 -2.7 -2.6 DNA polymerase I compare
Psest_3810 -2.6 -3.9 orotate phosphoribosyltransferase compare
Psest_0697 -2.6 -4.5 ribosomal protein L9 compare
Psest_3531 -2.6 -2.4 Peptidase propeptide and YPEB domain. compare
Psest_0489 -2.5 -4.1 phosphoserine phosphatase SerB compare
Psest_0309 -2.4 -1.6 RND family efflux transporter, MFP subunit compare
Psest_0718 -2.4 -5.3 nicotinate-nucleotide pyrophosphorylase compare
Psest_2714 -2.4 -3.2 7-cyano-7-deazaguanine reductase compare
Psest_4098 -2.4 -2.3 Superfamily I DNA and RNA helicases compare
Psest_1056 -2.3 -2.4 2-isopropylmalate synthase, bacterial type compare
Psest_1242 -2.2 -4.0 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_3943 -2.1 -3.7 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3185 -2.1 -2.2 MoxR-like ATPases compare
Psest_2447 -2.1 -1.9 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0313 -2.1 -4.6 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3013 -2.0 -2.3 cobyrinic acid a,c-diamide synthase compare
Psest_3697 -1.9 -1.4 Outer membrane lipoprotein carrier protein LolA. compare
Psest_2945 -1.8 -2.4 septum site-determining protein MinC compare
Psest_2613 -1.8 -3.0 hypothetical protein compare
Psest_0442 -1.8 -6.9 ATPases of the AAA+ class compare
Psest_0327 -1.7 -5.1 Transcriptional regulator compare
Psest_0411 -1.7 -8.0 biotin synthetase compare
Psest_0192 -1.7 -6.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0466 -1.7 -5.1 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0737 -1.7 -1.1 Cu(I)-responsive transcriptional regulator compare
Psest_2104 -1.6 -3.0 IscR-regulated protein YhgI compare
Psest_0311 -1.6 -4.0 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_3174 -1.6 -12.0 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_2067 -1.6 -2.2 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3228 -1.5 -9.3 Zn-dependent protease with chaperone function compare
Psest_1704 -1.5 -2.7 Dehydrogenases (flavoproteins) compare
Psest_0993 -1.5 -8.3 Glucose-6-phosphate isomerase compare
Psest_3565 -1.5 -1.7 hypothetical protein compare
Psest_1686 -1.4 -3.8 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0170 -1.4 -5.7 5,10-methenyltetrahydrofolate synthetase compare
Psest_3910 -1.4 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_4103 -1.4 -1.5 AraC-type DNA-binding domain-containing proteins compare
Psest_3998 -1.4 -5.1 glutamate--cysteine ligase compare
Psest_2088 -1.4 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_4070 -1.4 -7.9 PAS domain S-box compare
Psest_0831 -1.4 -1.2 hypothetical protein compare
Psest_3084 -1.3 -1.9 methyltransferase, putative compare
Psest_0367 -1.3 -1.6 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_3496 -1.2 -1.2 Predicted metal-binding protein compare
Psest_1065 -1.2 -2.6 hypothetical protein compare
Psest_0207 -1.2 -1.9 hypothetical protein compare
Psest_2225 -1.2 -2.3 Diacylglycerol kinase compare
Psest_0212 -1.2 -1.4 exodeoxyribonuclease V, gamma subunit compare
Psest_3458 -1.2 -1.3 hypothetical protein compare
Psest_1496 -1.2 -2.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_0064 -1.2 -1.5 Transcriptional regulator compare
Psest_1417 -1.2 -1.4 hypothetical protein compare
Psest_0277 -1.1 -1.4 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_0191 -1.1 -1.2 PAS domain S-box compare
Psest_3453 -1.1 -2.2 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_2218 -1.1 -2.2 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_0498 -1.1 -1.8 ribosome small subunit-dependent GTPase A compare
Psest_2850 -1.1 -1.6 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_0020 -1.1 -3.0 K+ transport systems, NAD-binding component compare
Psest_3012 -1.1 -2.2 cob(II)yrinic acid a,c-diamide reductase compare
Psest_0845 -1.1 -1.0 hypothetical protein compare
Psest_3304 -1.1 -4.6 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_3962 -1.1 -1.9 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_2907 -1.1 -1.6 Protein of unknown function (DUF3618). compare
Psest_2232 -1.0 -7.3 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_3904 -1.0 -0.6 hypothetical protein compare
Psest_0457 -1.0 -3.0 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2229 -1.0 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_2624 -1.0 -2.4 hypothetical protein compare
Psest_3047 -1.0 -1.3 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_1772 -1.0 -2.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3305 -1.0 -5.7 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_0955 -1.0 -3.3 D,L-lactate:H+ symporter (from data) compare
Psest_1204 -1.0 -2.1 Transcriptional regulators compare
Psest_4390 -1.0 -3.4 hypothetical protein compare
Psest_0378 -1.0 -1.1 Lactate dehydrogenase and related dehydrogenases compare
Psest_0259 -0.9 -2.0 cell division ATP-binding protein FtsE compare
Psest_1424 -0.9 -1.5 Lipoate-protein ligase A compare
Psest_4107 -0.9 -3.1 formate dehydrogenase accessory protein FdhE compare
Psest_0267 -0.9 -5.8 Uncharacterized enzyme of thiazole biosynthesis compare
Psest_0021 -0.9 -3.1 ribosomal RNA small subunit methyltransferase RsmB compare
Psest_0514 -0.9 -4.5 lytic murein transglycosylase B compare
Psest_1879 -0.9 -2.0 Trk-type K+ transport systems, membrane components compare
Psest_2712 -0.9 -3.5 Surface lipoprotein compare
Psest_3990 -0.9 -5.1 PAP2 superfamily. compare
Psest_4085 -0.9 -6.8 Biotin carboxylase compare
Psest_2991 -0.9 -3.2 hypothetical protein compare
Psest_4303 -0.9 -0.9 HEAT repeat. compare
Psest_3306 -0.9 -3.2 conserved hypothetical integral membrane protein compare
Psest_0334 -0.9 -2.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3180 -0.9 -4.9 Exonuclease I compare
Psest_3303 -0.9 -3.4 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0215 -0.9 -2.7 hypothetical protein compare
Psest_0536 -0.9 -2.5 thiamine-phosphate pyrophosphorylase compare
Psest_3743 -0.9 -2.7 Regulator of sigma D compare
Psest_3664 -0.9 -1.4 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_2333 -0.9 -1.4 Protein of unknown function (DUF3359). compare
Psest_0083 -0.9 -1.7 Uncharacterized conserved protein compare
Psest_0266 -0.9 -3.8 thiamine biosynthesis protein ThiS compare
Psest_3883 -0.9 -3.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3307 -0.9 -4.0 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3297 -0.9 -4.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_3850 -0.9 -0.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3860 -0.8 -2.5 Predicted permeases compare
Psest_3112 -0.8 -2.8 electron transport complex, RnfABCDGE type, A subunit compare
Psest_1643 -0.8 -1.3 hypothetical protein compare
Psest_0281 -0.8 -4.9 Dynamin family. compare
Psest_3832 -0.8 -1.5 hypothetical protein compare
Psest_2278 -0.8 -3.8 coenzyme PQQ biosynthesis protein PqqD compare
Psest_1632 -0.8 -2.4 Predicted permeases compare
Psest_1081 -0.8 -2.7 hypothetical protein compare
Psest_0515 -0.8 -3.1 rare lipoprotein A compare
Psest_4247 -0.8 -1.8 Serine/threonine protein phosphatase compare
Psest_2901 -0.8 -1.6 hypothetical protein compare
Psest_0218 -0.8 -2.1 Acyl-CoA hydrolase compare
Psest_2566 -0.8 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_1447 -0.8 -2.8 Putative threonine efflux protein compare
Psest_1940 -0.8 -2.1 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_3828 -0.8 -0.5 zinc-binding alcohol dehydrogenase family protein compare
Psest_4084 -0.8 -5.7 oxaloacetate decarboxylase alpha subunit compare
Psest_0187 -0.8 -2.1 Metal-dependent hydrolase compare
Psest_0082 -0.8 -1.9 Domain of unknown function (DUF892). compare
Psest_2667 -0.8 -1.8 Uncharacterized protein involved in propionate catabolism compare
Psest_0796 -0.8 -1.9 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_1511 -0.8 -4.3 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1884 -0.8 -1.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2772 -0.8 -4.1 MIP family channel proteins compare
Psest_3492 -0.8 -2.2 hypothetical protein compare
Psest_1626 -0.8 -2.8 Predicted integral membrane protein compare
Psest_2622 -0.8 -1.5 TadE-like protein. compare
Psest_1837 -0.8 -4.6 Endoglucanase compare
Psest_0476 -0.8 -4.0 type I secretion outer membrane protein, TolC family compare
Psest_4139 -0.7 -4.6 PAS domain S-box compare
Psest_3321 -0.7 -3.6 Predicted amidohydrolase compare
Psest_4145 -0.7 -1.4 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Psest_3803 -0.7 -0.9 DNA repair protein radc compare
Psest_3659 -0.7 -1.3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2001 -0.7 -1.3 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_2899 -0.7 -1.2 hypothetical protein compare
Psest_2442 -0.7 -1.7 hypothetical protein compare
Psest_1183 -0.7 -1.9 hydroxyisourate hydrolase compare
Psest_2277 -0.7 -3.2 coenzyme PQQ biosynthesis protein A compare
Psest_4134 -0.7 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_1775 -0.7 -2.7 Predicted ATPase (AAA+ superfamily) compare
Psest_1292 -0.7 -4.0 monothiol glutaredoxin, Grx4 family compare
Psest_2360 -0.7 -1.6 Uncharacterized protein, putative amidase compare
Psest_3963 -0.7 -5.3 PAS domain S-box compare
Psest_2358 -0.7 -1.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3115 -0.7 -3.8 electron transport complex, RnfABCDGE type, D subunit compare
Psest_1215 -0.7 -1.0 Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) compare
Psest_2281 -0.7 -3.5 Phosphoserine aminotransferase compare
Psest_1952 -0.7 -2.8 hypothetical protein compare
Psest_2120 -0.7 -1.0 Transcriptional regulator compare


Specific Phenotypes

For 2 genes in this experiment

For stress Fusidic acid sodium salt in Pseudomonas stutzeri RCH2

For stress Fusidic acid sodium salt across organisms