Experiment set7H45 for Pseudomonas stutzeri RCH2

Compare to:

nitrate reduction - anaerobic

200 most important genes:

  gene name fitness t score description  
Psest_0153 -4.1 -14.0 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3647 -3.9 -5.9 Indole-3-glycerol phosphate synthase compare
Psest_3298 -3.9 -10.5 histidinol dehydrogenase compare
Psest_0152 -3.5 -8.1 Imidazoleglycerol-phosphate dehydratase compare
Psest_0279 -3.5 -7.3 methionine biosynthesis protein MetW compare
Psest_3299 -3.4 -12.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0952 -3.3 -3.1 Uncharacterized conserved protein compare
Psest_3866 -3.2 -16.3 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3864 -3.2 -14.0 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0155 -3.2 -6.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0687 -3.2 -8.1 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2578 -3.1 -11.5 O-succinylhomoserine sulfhydrylase compare
Psest_0280 -3.1 -15.0 homoserine O-acetyltransferase compare
Psest_3384 -3.1 -10.2 glutamate 5-kinase compare
Psest_3944 -3.1 -3.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0489 -3.0 -4.1 phosphoserine phosphatase SerB compare
Psest_3648 -3.0 -7.7 anthranilate phosphoribosyltransferase compare
Psest_3650 -3.0 -10.4 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2584 -2.9 -6.7 Phosphoribosylanthranilate isomerase compare
Psest_2591 -2.9 -3.9 3-isopropylmalate dehydratase, large subunit compare
Psest_0062 -2.9 -9.7 tryptophan synthase, alpha subunit compare
Psest_0508 -2.8 -8.7 gamma-glutamyl phosphate reductase compare
Psest_1452 -2.7 -9.4 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_2234 -2.7 -10.8 oxygen-independent coproporphyrinogen III oxidase compare
Psest_2589 -2.7 -10.7 3-isopropylmalate dehydrogenase compare
Psest_2590 -2.6 -2.0 3-isopropylmalate dehydratase, small subunit compare
Psest_1473 -2.6 -6.5 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0954 -2.5 -8.7 Fe-S oxidoreductase compare
Psest_0953 -2.5 -10.4 iron-sulfur cluster-binding protein compare
Psest_3810 -2.4 -2.9 orotate phosphoribosyltransferase compare
Psest_2579 -2.4 -6.5 amidophosphoribosyltransferase compare
Psest_2067 -2.3 -2.2 ABC-type oligopeptide transport system, periplasmic component compare
Psest_0063 -2.3 -7.4 tryptophan synthase, beta subunit compare
Psest_3943 -2.2 -3.0 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3297 -2.2 -10.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_3649 -2.1 -7.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3483 -2.1 -6.2 respiratory nitrate reductase, gamma subunit compare
Psest_1115 -2.1 -4.2 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_1947 -2.1 -2.4 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_3484 -2.0 -4.9 nitrate reductase molybdenum cofactor assembly chaperone compare
Psest_3322 -2.0 -13.7 TIGR02099 family protein compare
Psest_3488 -2.0 -4.3 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_2872 -2.0 -2.6 protein RecA compare
Psest_3377 -2.0 -1.4 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1772 -1.9 -4.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3123 -1.9 -3.6 dihydroorotase, homodimeric type compare
Psest_0837 -1.9 -2.0 Putative lipid carrier protein compare
Psest_3486 -1.9 -13.0 respiratory nitrate reductase, alpha subunit compare
Psest_3832 -1.9 -2.2 hypothetical protein compare
Psest_3489 -1.9 -8.8 hypothetical protein compare
Psest_1065 -1.9 -2.5 hypothetical protein compare
Psest_3485 -1.9 -9.0 nitrate reductase, beta subunit compare
Psest_1961 -1.8 -8.4 molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial compare
Psest_2323 -1.8 -9.7 Uncharacterized protein conserved in archaea compare
Psest_3170 -1.8 -4.9 molybdenum cofactor biosynthesis protein MoaC compare
Psest_3720 -1.8 -11.2 penicillin-binding protein, 1A family compare
Psest_3159 -1.8 -7.1 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0326 -1.8 -8.5 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_4345 -1.8 -9.1 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_4191 -1.8 -2.0 Transcriptional regulator compare
Psest_3490 -1.7 -3.2 Signal transduction histidine kinase, nitrate/nitrite-specific compare
Psest_2329 -1.7 -10.9 Transcriptional regulator compare
Psest_4310 -1.7 -1.9 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_1013 -1.7 -3.0 phosphoribosylamine--glycine ligase compare
Psest_3168 -1.7 -2.3 Molybdopterin converting factor, large subunit compare
Psest_0842 -1.7 -2.2 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_0182 -1.7 -6.9 glycine cleavage system H protein compare
Psest_0393 -1.7 -4.9 Methylase of chemotaxis methyl-accepting proteins compare
Psest_0442 -1.7 -4.1 ATPases of the AAA+ class compare
Psest_0826 -1.6 -6.3 Cytochrome c compare
Psest_0296 -1.6 -7.7 glutathione synthetase, prokaryotic compare
Psest_0193 -1.6 -1.2 conserved hypothetical protein compare
Psest_0313 -1.6 -3.7 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2324 -1.6 -9.8 hypothetical protein compare
Psest_1496 -1.5 -1.7 Holliday junction DNA helicase, RuvA subunit compare
Psest_0257 -1.5 -3.6 Predicted Zn-dependent peptidases compare
Psest_2933 -1.5 -8.6 Signal transduction histidine kinase compare
Psest_0445 -1.5 -10.7 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0737 -1.5 -0.9 Cu(I)-responsive transcriptional regulator compare
Psest_1474 -1.5 -4.3 phosphoribosylaminoimidazole synthetase compare
Psest_0325 -1.5 -11.2 Putative threonine efflux protein compare
Psest_2864 -1.5 -4.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3818 -1.5 -5.8 endoribonuclease L-PSP, putative compare
Psest_3178 -1.5 -3.3 formyltetrahydrofolate deformylase compare
Psest_0840 -1.5 -10.8 anaerobic ribonucleoside-triphosphate reductase compare
Psest_0316 -1.5 -2.8 Cytochrome c556 compare
Psest_0066 -1.5 -2.1 Protein of unknown function (DUF3060). compare
Psest_3479 -1.4 -2.9 molybdenum cofactor synthesis domain compare
Psest_3937 -1.4 -1.8 ATP-dependent protease HslVU, ATPase subunit compare
Psest_0415 -1.4 -3.9 dethiobiotin synthase compare
Psest_0218 -1.4 -2.9 Acyl-CoA hydrolase compare
Psest_0790 -1.4 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_1905 -1.4 -2.1 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_3226 -1.4 -1.1 Predicted membrane protein compare
Psest_1643 -1.3 -1.3 hypothetical protein compare
Psest_4396 -1.3 -7.1 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_3301 -1.3 -3.3 Predicted transcriptional regulator, BolA superfamily compare
Psest_0297 -1.3 -4.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3338 -1.3 -1.6 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_1295 -1.3 -4.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_4209 -1.3 -2.5 Uncharacterized conserved small protein compare
Psest_2325 -1.3 -6.0 alpha-L-glutamate ligase-related protein compare
Psest_2855 -1.3 -2.0 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0484 -1.3 -3.4 hypothetical protein compare
Psest_3565 -1.3 -1.8 hypothetical protein compare
Psest_0844 -1.3 -3.5 High-affinity Fe2+/Pb2+ permease compare
Psest_0306 -1.3 -9.2 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_3044 -1.2 -4.4 deoxycytidine triphosphate deaminase compare
Psest_2809 -1.2 -2.5 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_0708 -1.2 -1.4 outer membrane assembly lipoprotein YfiO compare
Psest_0411 -1.2 -6.8 biotin synthetase compare
Psest_0998 -1.2 -2.5 poly(A) polymerase compare
Psest_4097 -1.2 -7.4 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_0827 -1.2 -7.6 Nitric oxide reductase large subunit compare
Psest_0357 -1.2 -2.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0114 -1.2 -1.3 RNA polymerase sigma factor, sigma-70 family compare
Psest_0822 -1.2 -3.0 Transcriptional regulators compare
Psest_2566 -1.2 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_0146 -1.2 -5.8 Uncharacterized protein involved in outer membrane biogenesis compare
Psest_0144 -1.1 -5.0 Fe-S cluster protector protein compare
Psest_0799 -1.1 -3.8 Uncharacterized protein involved in response to NO compare
Psest_3998 -1.1 -4.9 glutamate--cysteine ligase compare
Psest_0828 -1.1 -4.0 Nitric oxide reductase activation protein compare
Psest_0814 -1.1 -2.4 MoxR-like ATPases compare
Psest_1659 -1.1 -2.0 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0461 -1.1 -3.9 Glycosyltransferase involved in LPS biosynthesis compare
Psest_2411 -1.1 -3.3 PAS domain S-box compare
Psest_1163 -1.1 -3.0 diguanylate cyclase (GGDEF) domain compare
Psest_1506 -1.1 -3.9 queuosine biosynthesis protein QueC compare
Psest_3391 -1.1 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_0951 -1.0 -5.3 FAD/FMN-containing dehydrogenases compare
Psest_3960 -1.0 -1.7 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_2238 -1.0 -2.4 hypothetical protein compare
Psest_0462 -1.0 -9.8 Lipid A core - O-antigen ligase and related enzymes compare
Psest_1656 -1.0 -2.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_2641 -1.0 -6.0 Conserved secreted protein compare
Psest_3717 -1.0 -4.0 Tfp pilus assembly protein PilO compare
Psest_1397 -1.0 -2.4 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_1306 -1.0 -1.4 hypothetical protein compare
Psest_3092 -1.0 -1.8 ribonuclease III, bacterial compare
Psest_0830 -1.0 -5.1 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_0086 -1.0 -1.9 hypothetical protein compare
Psest_0078 -1.0 -1.1 hypothetical protein compare
Psest_1574 -1.0 -2.1 phenazine biosynthesis protein PhzF family compare
Psest_2967 -1.0 -3.1 flagellar basal-body rod protein FlgC compare
Psest_3843 -1.0 -5.2 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0412 -1.0 -5.9 8-amino-7-oxononanoate synthase compare
Psest_0045 -1.0 -3.2 hypothetical protein compare
Psest_0835 -1.0 -6.2 Collagenase and related proteases compare
Psest_1103 -1.0 -2.4 GTP-binding protein YchF compare
Psest_0057 -1.0 -3.3 Predicted transcriptional regulators compare
Psest_1527 -1.0 -6.6 Na+/proline symporter compare
Psest_1679 -0.9 -1.4 ribonuclease, Rne/Rng family compare
Psest_1824 -0.9 -2.0 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_0491 -0.9 -5.5 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3085 -0.9 -5.4 methyltransferase, putative compare
Psest_4220 -0.9 -3.1 Protein of unknown function (DUF2782). compare
Psest_3482 -0.9 -2.1 Parvulin-like peptidyl-prolyl isomerase compare
Psest_0691 -0.9 -6.7 ribonuclease R compare
Psest_0120 -0.9 -2.8 hypothetical protein compare
Psest_1012 -0.9 -2.5 Signal transduction histidine kinase compare
Psest_3806 -0.9 -3.7 Phosphomannomutase compare
Psest_0186 -0.9 -2.0 Protein-disulfide isomerase compare
Psest_3809 -0.9 -2.8 hypothetical protein compare
Psest_0013 -0.9 -3.8 Lauroyl/myristoyl acyltransferase compare
Psest_2370 -0.9 -1.3 Protein of unknown function (DUF1652). compare
Psest_1167 -0.9 -0.8 hypothetical protein compare
Psest_3487 -0.9 -4.0 Nitrate/nitrite transporter compare
Psest_3645 -0.9 -5.4 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0516 -0.9 -5.6 D-alanyl-D-alanine carboxypeptidase compare
Psest_2862 -0.9 -5.1 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_4363 -0.9 -4.6 ATPases involved in chromosome partitioning compare
Psest_1724 -0.9 -1.7 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1907 -0.9 -0.9 hypothetical protein compare
Psest_4406 -0.9 -2.0 hypothetical protein compare
Psest_4393 -0.9 -4.0 Capsule polysaccharide export protein compare
Psest_2863 -0.8 -2.9 Transcriptional regulator compare
Psest_0794 -0.8 -7.0 parallel beta-helix repeat (two copies) compare
Psest_2104 -0.8 -1.7 IscR-regulated protein YhgI compare
Psest_2457 -0.8 -2.0 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_1230 -0.8 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_3750 -0.8 -4.8 Predicted signal transduction protein with a C-terminal ATPase domain compare
Psest_1082 -0.8 -1.7 Enoyl-CoA hydratase/carnithine racemase compare
Psest_4341 -0.8 -3.5 hypothetical protein compare
Psest_1532 -0.8 -2.4 DNA recombination-dependent growth factor C compare
Psest_0796 -0.8 -2.3 ABC-type transport system involved in multi-copper enzyme maturation, permease component compare
Psest_1940 -0.8 -2.1 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_4001 -0.8 -2.9 acetylornithine deacetylase (ArgE) compare
Psest_0836 -0.8 -2.8 Collagenase and related proteases compare
Psest_1405 -0.8 -3.3 hypothetical protein compare
Psest_1562 -0.8 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_2988 -0.8 -3.3 aspartate kinase, monofunctional class compare
Psest_0133 -0.8 -1.2 type VI secretion protein, VC_A0107 family compare
Psest_0349 -0.8 -2.9 DNA polymerase III, alpha subunit (gram-positive type) compare
Psest_0359 -0.8 -1.6 Transcriptional regulators compare
Psest_1302 -0.8 -2.5 Predicted thioesterase compare
Psest_4252 -0.8 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_1919 -0.8 -1.5 Uncharacterized membrane protein (homolog of Drosophila rhomboid) compare
Psest_4307 -0.8 -1.4 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_3474 -0.8 -1.5 Short-chain dehydrogenases of various substrate specificities compare


Specific Phenotypes

For 5 genes in this experiment