Experiment set7H44 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 defined media

200 most important genes:

  gene name fitness t score description  
Psest_0279 -5.5 -5.3 methionine biosynthesis protein MetW compare
Psest_0508 -5.2 -6.2 gamma-glutamyl phosphate reductase compare
Psest_0155 -5.2 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3864 -5.2 -8.6 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0153 -5.2 -9.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3866 -5.0 -12.5 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3944 -4.9 -3.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3384 -4.9 -6.7 glutamate 5-kinase compare
Psest_3647 -4.9 -4.7 Indole-3-glycerol phosphate synthase compare
Psest_2590 -4.8 -2.4 3-isopropylmalate dehydratase, small subunit compare
Psest_0152 -4.8 -7.3 Imidazoleglycerol-phosphate dehydratase compare
Psest_3648 -4.7 -3.3 anthranilate phosphoribosyltransferase compare
Psest_3298 -4.7 -7.8 histidinol dehydrogenase compare
Psest_0326 -4.7 -11.3 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_2584 -4.7 -3.2 Phosphoribosylanthranilate isomerase compare
Psest_3650 -4.6 -7.1 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3299 -4.6 -8.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0280 -4.4 -12.4 homoserine O-acetyltransferase compare
Psest_0325 -4.4 -18.0 Putative threonine efflux protein compare
Psest_2578 -4.1 -10.7 O-succinylhomoserine sulfhydrylase compare
Psest_0953 -4.1 -10.9 iron-sulfur cluster-binding protein compare
Psest_0954 -4.1 -9.9 Fe-S oxidoreductase compare
Psest_0687 -4.1 -3.9 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0062 -4.0 -8.2 tryptophan synthase, alpha subunit compare
Psest_1452 -4.0 -6.7 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_3649 -4.0 -6.7 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3226 -4.0 -1.9 Predicted membrane protein compare
Psest_0952 -4.0 -2.7 Uncharacterized conserved protein compare
Psest_1473 -3.9 -8.3 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1509 -3.9 -10.0 quinolinate synthetase complex, A subunit compare
Psest_2579 -3.8 -4.6 amidophosphoribosyltransferase compare
Psest_2589 -3.8 -10.5 3-isopropylmalate dehydrogenase compare
Psest_2591 -3.7 -3.6 3-isopropylmalate dehydratase, large subunit compare
Psest_4298 -3.7 -1.8 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_1772 -3.7 -5.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0489 -3.6 -3.5 phosphoserine phosphatase SerB compare
Psest_0063 -3.5 -5.4 tryptophan synthase, beta subunit compare
Psest_3297 -3.5 -10.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_1037 -3.3 -3.3 acetolactate synthase, small subunit compare
Psest_0718 -3.2 -3.1 nicotinate-nucleotide pyrophosphorylase compare
Psest_1474 -3.2 -2.2 phosphoribosylaminoimidazole synthetase compare
Psest_3818 -3.1 -7.5 endoribonuclease L-PSP, putative compare
Psest_0411 -3.0 -10.1 biotin synthetase compare
Psest_3159 -3.0 -8.6 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3721 -2.9 -8.6 Malic enzyme compare
Psest_0442 -2.8 -3.8 ATPases of the AAA+ class compare
Psest_1295 -2.8 -5.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3998 -2.8 -6.2 glutamate--cysteine ligase compare
Psest_4084 -2.8 -15.5 oxaloacetate decarboxylase alpha subunit compare
Psest_3810 -2.8 -2.7 orotate phosphoribosyltransferase compare
Psest_0414 -2.8 -6.3 biotin biosynthesis protein BioC compare
Psest_2329 -2.8 -14.6 Transcriptional regulator compare
Psest_4085 -2.7 -14.8 Biotin carboxylase compare
Psest_0537 -2.7 -3.0 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_0306 -2.6 -14.9 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_1013 -2.6 -2.5 phosphoribosylamine--glycine ligase compare
Psest_3123 -2.5 -4.1 dihydroorotase, homodimeric type compare
Psest_0951 -2.5 -9.9 FAD/FMN-containing dehydrogenases compare
Psest_1947 -2.4 -2.3 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0536 -2.4 -5.5 thiamine-phosphate pyrophosphorylase compare
Psest_0193 -2.3 -1.6 conserved hypothetical protein compare
Psest_3943 -2.3 -3.0 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0313 -2.3 -4.0 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0412 -2.3 -10.6 8-amino-7-oxononanoate synthase compare
Psest_4310 -2.2 -2.1 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_4086 -2.2 -11.2 Transcriptional regulator compare
Psest_0267 -2.2 -11.1 Uncharacterized enzyme of thiazole biosynthesis compare
Psest_2324 -2.2 -11.6 hypothetical protein compare
Psest_0266 -2.2 -6.9 thiamine biosynthesis protein ThiS compare
Psest_0413 -2.1 -7.3 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0955 -2.1 -6.2 D,L-lactate:H+ symporter (from data) compare
Psest_3377 -2.1 -1.7 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_2088 -2.1 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_0393 -2.1 -5.2 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1115 -2.1 -4.3 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3092 -2.1 -2.7 ribonuclease III, bacterial compare
Psest_0477 -1.9 -11.3 thiamine biosynthesis protein ThiC compare
Psest_0359 -1.9 -2.7 Transcriptional regulators compare
Psest_2325 -1.8 -7.8 alpha-L-glutamate ligase-related protein compare
Psest_2719 -1.8 -3.9 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_0415 -1.8 -4.4 dethiobiotin synthase compare
Psest_3908 -1.7 -1.3 Cytochrome c553 compare
Psest_1292 -1.7 -7.3 monothiol glutaredoxin, Grx4 family compare
Psest_4191 -1.6 -2.1 Transcriptional regulator compare
Psest_1031 -1.6 -7.3 Uncharacterized protein conserved in bacteria compare
Psest_2946 -1.6 -4.1 septum site-determining protein MinD compare
Psest_1686 -1.6 -4.4 fatty acid/phospholipid synthesis protein PlsX compare
Psest_2067 -1.5 -1.4 ABC-type oligopeptide transport system, periplasmic component compare
Psest_1496 -1.5 -2.0 Holliday junction DNA helicase, RuvA subunit compare
Psest_0484 -1.5 -3.7 hypothetical protein compare
Psest_3720 -1.5 -10.0 penicillin-binding protein, 1A family compare
Psest_2122 -1.4 -1.2 Parvulin-like peptidyl-prolyl isomerase compare
Psest_2323 -1.4 -8.5 Uncharacterized protein conserved in archaea compare
Psest_0207 -1.4 -2.4 hypothetical protein compare
Psest_3322 -1.4 -10.8 TIGR02099 family protein compare
Psest_0013 -1.4 -5.1 Lauroyl/myristoyl acyltransferase compare
Psest_2333 -1.3 -1.4 Protein of unknown function (DUF3359). compare
Psest_0257 -1.3 -3.2 Predicted Zn-dependent peptidases compare
Psest_4211 -1.3 -3.1 conserverd hypothetical protein compare
Psest_3960 -1.3 -1.7 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_2566 -1.3 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_3565 -1.3 -2.0 hypothetical protein compare
Psest_3447 -1.3 -1.6 Uncharacterized MobA-related protein compare
Psest_3456 -1.3 -1.1 RNA polymerase sigma factor, sigma-70 family compare
Psest_1824 -1.3 -2.7 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_2090 -1.2 -2.6 Protein of unknown function (DUF2970). compare
Psest_3664 -1.2 -0.8 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_4307 -1.2 -1.8 ABC-type Zn2+ transport system, periplasmic component/surface adhesin compare
Psest_2988 -1.2 -5.1 aspartate kinase, monofunctional class compare
Psest_4345 -1.2 -6.8 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_2001 -1.2 -1.6 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_0296 -1.2 -6.1 glutathione synthetase, prokaryotic compare
Psest_2907 -1.2 -1.7 Protein of unknown function (DUF3618). compare
Psest_2520 -1.2 -2.3 Predicted SAM-dependent methyltransferase compare
Psest_0170 -1.1 -4.5 5,10-methenyltetrahydrofolate synthetase compare
Psest_1277 -1.1 -7.2 2-isopropylmalate synthase, yeast type compare
Psest_2648 -1.1 -2.3 hypothetical protein compare
Psest_1082 -1.1 -2.2 Enoyl-CoA hydratase/carnithine racemase compare
Psest_4363 -1.1 -5.4 ATPases involved in chromosome partitioning compare
Psest_0218 -1.1 -2.4 Acyl-CoA hydrolase compare
Psest_3718 -1.1 -4.6 Tfp pilus assembly protein PilN compare
Psest_2864 -1.1 -3.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2650 -1.1 -3.1 hypothetical protein compare
Psest_3323 -1.0 -3.6 ribonuclease, Rne/Rng family compare
Psest_2744 -1.0 -1.7 Uncharacterized conserved protein compare
Psest_2104 -1.0 -2.3 IscR-regulated protein YhgI compare
Psest_1242 -1.0 -2.0 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0292 -1.0 -2.0 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_1960 -1.0 -3.0 Bacterial protein of unknown function (DUF903). compare
Psest_0316 -1.0 -2.0 Cytochrome c556 compare
Psest_3803 -1.0 -1.3 DNA repair protein radc compare
Psest_2218 -1.0 -2.4 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_3047 -1.0 -1.0 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_1527 -0.9 -6.5 Na+/proline symporter compare
Psest_4142 -0.9 -0.9 hypothetical protein compare
Psest_3129 -0.9 -1.3 tyrosine recombinase XerD compare
Psest_2901 -0.9 -1.3 hypothetical protein compare
Psest_4243 -0.9 -0.9 type VI secretion lipoprotein, VC_A0113 family compare
Psest_1065 -0.9 -1.8 hypothetical protein compare
Psest_2316 -0.9 -6.1 phosphoenolpyruvate synthase compare
Psest_1511 -0.9 -2.7 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0999 -0.9 -2.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3085 -0.9 -5.4 methyltransferase, putative compare
Psest_2358 -0.9 -1.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_0673 -0.9 -2.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_3178 -0.9 -1.6 formyltetrahydrofolate deformylase compare
Psest_4396 -0.8 -5.0 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_3354 -0.8 -3.0 1-phosphofructokinase (EC 2.7.1.56) (from data) compare
Psest_3348 -0.8 -3.4 Uncharacterized iron-regulated protein compare
Psest_0300 -0.8 -4.3 Methyl-accepting chemotaxis protein compare
Psest_2240 -0.8 -1.4 hypothetical protein compare
Psest_3927 -0.8 -2.8 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_0146 -0.8 -4.4 Uncharacterized protein involved in outer membrane biogenesis compare
Psest_2668 -0.8 -2.1 Lactoylglutathione lyase and related lyases compare
Psest_0182 -0.8 -4.1 glycine cleavage system H protein compare
Psest_1132 -0.8 -3.4 mutator mutT protein compare
Psest_2225 -0.8 -1.8 Diacylglycerol kinase compare
Psest_3084 -0.8 -1.4 methyltransferase, putative compare
Psest_3101 -0.8 -6.5 L-aspartate oxidase compare
Psest_3806 -0.8 -3.9 Phosphomannomutase compare
Psest_4003 -0.8 -3.1 TIGR00153 family protein compare
Psest_1752 -0.8 -1.3 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB compare
Psest_2580 -0.8 -2.8 Uncharacterized membrane protein, required for colicin V production compare
Psest_3710 -0.8 -5.6 glutamate synthase small subunit family protein, proteobacterial compare
Psest_0284 -0.8 -5.7 pyridoxal phosphate enzyme, YggS family compare
Psest_2023 -0.8 -2.3 isocitrate dehydrogenase, NADP-dependent, monomeric type compare
Psest_2641 -0.8 -4.7 Conserved secreted protein compare
Psest_2646 -0.8 -1.4 SOS regulatory protein LexA compare
Psest_4347 -0.8 -5.3 PAS domain S-box compare
Psest_3518 -0.8 -0.8 Transcriptional regulators compare
Psest_0061 -0.8 -1.5 hypothetical protein compare
Psest_2944 -0.7 -1.4 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_4044 -0.7 -2.7 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3535 -0.7 -2.1 hypothetical protein compare
Psest_0725 -0.7 -1.3 Negative regulator of beta-lactamase expression compare
Psest_2862 -0.7 -4.4 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Psest_3357 -0.7 -2.3 Predicted pyrophosphatase compare
Psest_0533 -0.7 -2.5 Sel1 repeat. compare
Psest_3809 -0.7 -2.5 hypothetical protein compare
Psest_0297 -0.7 -2.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1870 -0.7 -1.0 Transcriptional regulators compare
Psest_3275 -0.7 -2.9 Stringent starvation protein B compare
Psest_3824 -0.7 -1.5 Predicted membrane protein compare
Psest_1103 -0.7 -2.0 GTP-binding protein YchF compare
Psest_1886 -0.7 -2.6 Uncharacterized protein conserved in bacteria compare
Psest_1532 -0.7 -2.3 DNA recombination-dependent growth factor C compare
Psest_4391 -0.7 -4.9 ATPases involved in chromosome partitioning compare
Psest_0919 -0.7 -1.9 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_2845 -0.7 -4.5 [Protein-PII] uridylyltransferase compare
Psest_3878 -0.7 -1.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1704 -0.7 -1.1 Dehydrogenases (flavoproteins) compare
Psest_2645 -0.7 -3.6 Transcriptional regulator compare
Psest_3881 -0.7 -0.9 hypothetical protein compare
Psest_0592 -0.7 -2.0 hypothetical protein compare
Psest_2885 -0.7 -1.4 Acyl carrier protein compare
Psest_2327 -0.7 -3.5 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_4126 -0.7 -1.2 Predicted peroxiredoxins compare
Psest_2331 -0.7 -4.1 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_2674 -0.7 -2.2 Protein chain release factor B compare
Psest_1643 -0.6 -0.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in carbon source experiments