Experiment set7H44 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 defined media

200 most detrimental genes:

  gene name fitness t score description  
Psest_2260 +2.3 20.8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1635 +2.3 21.0 Signal transduction histidine kinase compare
Psest_0538 +1.9 18.9 Signal transduction histidine kinase compare
Psest_1725 +1.9 14.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3100 +1.8 13.8 RNA polymerase sigma factor RpoE compare
Psest_1122 +1.7 15.9 putative adhesin (DUF1302) (from data) compare
Psest_1840 +1.6 15.3 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_2232 +1.6 13.3 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_1661 +1.6 4.9 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_3005 +1.5 4.1 Fructose-2,6-bisphosphatase compare
Psest_3296 +1.5 8.9 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_0401 +1.5 2.8 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_1805 +1.5 5.7 integration host factor, beta subunit compare
Psest_0857 +1.5 2.0 Membrane transporters of cations and cationic drugs compare
Psest_0993 +1.5 10.5 Glucose-6-phosphate isomerase compare
Psest_2775 +1.4 6.3 Glycerol-3-phosphate dehydrogenase compare
Psest_1923 +1.4 6.1 adhesin-associated BNR repeat protein (from data) compare
Psest_4335 +1.4 6.3 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_1999 +1.4 2.5 pseudouridine synthase compare
Psest_1819 +1.3 12.3 Nucleoside-diphosphate-sugar epimerases compare
Psest_1657 +1.3 2.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, C subunit compare
Psest_1313 +1.3 2.8 Uncharacterized conserved small protein compare
Psest_0226 +1.3 3.6 Domain of unknown function (DUF3482)./GTPase of unknown function. compare
Psest_2229 +1.3 4.5 Uncharacterized protein conserved in bacteria compare
Psest_4274 +1.2 3.6 hypothetical protein compare
Psest_1659 +1.2 4.5 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_0389 +1.2 3.0 hypothetical protein compare
Psest_1924 +1.2 10.3 adhesin-associated MmpL efflux pump (from data) compare
Psest_3480 +1.2 1.9 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_0417 +1.2 4.6 Acyl-CoA dehydrogenases compare
Psest_1660 +1.2 3.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0378 +1.1 2.3 Lactate dehydrogenase and related dehydrogenases compare
Psest_1280 +1.1 10.1 TonB-dependent copper receptor compare
Psest_0164 +1.1 1.5 Glutaredoxin, GrxC family compare
Psest_0310 +1.1 3.6 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_0191 +1.1 1.4 PAS domain S-box compare
Psest_1655 +1.1 5.1 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_1305 +1.1 3.7 Heat shock protein compare
Psest_1167 +1.0 1.6 hypothetical protein compare
Psest_3910 +1.0 1.2 Uncharacterized protein conserved in bacteria compare
Psest_4273 +1.0 7.5 Lysophospholipase compare
Psest_1417 +1.0 1.5 hypothetical protein compare
Psest_1837 +1.0 7.3 Endoglucanase compare
Psest_3963 +1.0 7.6 PAS domain S-box compare
Psest_0105 +1.0 2.9 malonate decarboxylase, beta subunit compare
Psest_0487 +1.0 5.1 Uncharacterized protein conserved in bacteria compare
Psest_2066 +1.0 1.6 ABC-type uncharacterized transport system, permease component compare
Psest_0227 +1.0 1.7 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
Psest_2752 +0.9 2.8 Uncharacterized protein conserved in bacteria compare
Psest_3543 +0.9 3.1 hypothetical protein compare
Psest_3890 +0.9 0.9 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_1994 +0.9 4.2 Amidases related to nicotinamidase compare
Psest_1974 +0.9 4.4 integration host factor, alpha subunit compare
Psest_4010 +0.9 2.2 peroxiredoxin, OsmC subfamily compare
Psest_0201 +0.9 3.6 PAS domain S-box compare
Psest_0312 +0.9 4.0 Superfamily II DNA and RNA helicases compare
Psest_1463 +0.9 1.5 SufE protein probably involved in Fe-S center assembly compare
Psest_3216 +0.9 8.7 diguanylate cyclase (GGDEF) domain compare
Psest_0693 +0.9 8.2 His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_2083 +0.9 4.8 Putative sterol carrier protein compare
Psest_2712 +0.9 4.9 Surface lipoprotein compare
Psest_3039 +0.9 1.1 periplasmic nitrate reductase, NapE protein compare
Psest_0717 +0.9 7.5 Protein of unknown function (DUF1631). compare
Psest_0805 +0.9 2.8 hypothetical protein compare
Psest_0869 +0.9 2.3 Acetyltransferase (isoleucine patch superfamily) compare
Psest_3235 +0.9 7.5 Protein of unknown function (DUF1329). compare
Psest_0872 +0.9 1.3 Helix-turn-helix. compare
Psest_2976 +0.9 1.6 hypothetical protein compare
Psest_0987 +0.8 2.0 Predicted periplasmic or secreted lipoprotein compare
Psest_2778 +0.8 2.3 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3784 +0.8 1.8 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_0697 +0.8 2.9 ribosomal protein L9 compare
Psest_0192 +0.8 5.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0779 +0.8 2.5 tyrosine aminotransferase (EC 2.6.1.57) (from data) compare
Psest_0385 +0.8 1.8 Conserved secreted protein compare
Psest_0855 +0.8 3.1 NAD-dependent aldehyde dehydrogenases compare
Psest_2357 +0.8 1.7 Short-chain dehydrogenases of various substrate specificities compare
Psest_3974 +0.8 5.0 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_3217 +0.8 7.7 PAS domain S-box compare
Psest_0692 +0.8 2.4 rRNA methylase, putative, group 3 compare
Psest_4141 +0.8 4.4 3-carboxymuconate cyclase compare
Psest_3697 +0.8 0.5 Outer membrane lipoprotein carrier protein LolA. compare
Psest_3694 +0.8 3.2 Predicted acyltransferase compare
Psest_0094 +0.8 1.4 Uncharacterized enzyme of phosphonate metabolism compare
Psest_3112 +0.8 4.0 electron transport complex, RnfABCDGE type, A subunit compare
Psest_2447 +0.8 1.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3828 +0.8 1.0 zinc-binding alcohol dehydrogenase family protein compare
Psest_1279 +0.8 2.9 hypothetical protein compare
Psest_3819 +0.8 2.0 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0956 +0.8 5.4 Transcriptional regulators compare
Psest_0959 +0.8 2.7 Uncharacterized protein conserved in bacteria compare
Psest_1283 +0.7 2.9 Membrane proteins related to metalloendopeptidases compare
Psest_2527 +0.7 4.9 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_0100 +0.7 1.8 phosphonate ABC transporter, ATP-binding protein compare
Psest_0355 +0.7 1.4 Glycine cleavage system regulatory protein compare
Psest_1656 +0.7 2.3 NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit compare
Psest_3884 +0.7 0.8 Signal transduction histidine kinase compare
Psest_0095 +0.7 1.6 phosphonate C-P lyase system protein PhnH compare
Psest_1491 +0.7 1.3 Cold shock proteins compare
Psest_1306 +0.7 1.5 hypothetical protein compare
Psest_3307 +0.7 4.6 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3531 +0.7 1.4 Peptidase propeptide and YPEB domain. compare
Psest_1567 +0.7 2.2 Transcriptional regulator compare
Psest_2530 +0.7 4.0 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_3114 +0.7 4.6 electron transport complex, RnfABCDGE type, C subunit compare
Psest_0101 +0.7 2.2 Short-chain alcohol dehydrogenase of unknown specificity compare
Psest_3247 +0.7 1.6 Uncharacterized membrane protein compare
Psest_2288 +0.7 3.2 trigger factor compare
Psest_2344 +0.7 2.2 Methyl-accepting chemotaxis protein compare
Psest_1522 +0.7 2.1 hypothetical protein compare
Psest_3735 +0.7 1.1 uncharacterized domain 1 compare
Psest_4256 +0.7 1.4 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3006 +0.7 2.5 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
Psest_2629 +0.7 2.0 Flp pilus assembly protein, pilin Flp compare
Psest_3212 +0.7 2.9 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3693 +0.7 1.2 Glycosyltransferases involved in cell wall biogenesis compare
Psest_4056 +0.7 2.1 FMN reductase, SsuE family compare
Psest_2773 +0.7 4.4 glycerol kinase compare
Psest_2855 +0.7 1.7 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_3012 +0.7 2.0 cob(II)yrinic acid a,c-diamide reductase compare
Psest_3478 +0.7 0.9 Cytochrome B561 compare
Psest_2153 +0.6 2.1 formate dehydrogenase, gamma subunit compare
Psest_3497 +0.6 2.3 Predicted metalloprotease compare
Psest_3304 +0.6 3.4 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_3174 +0.6 5.2 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_2415 +0.6 2.1 TolQ protein compare
Psest_3115 +0.6 4.3 electron transport complex, RnfABCDGE type, D subunit compare
Psest_3400 +0.6 1.4 Copper resistance protein D. compare
Psest_0696 +0.6 3.7 hypothetical protein compare
Psest_3905 +0.6 2.1 formate dehydrogenase, alpha subunit, archaeal-type compare
Psest_1412 +0.6 2.8 Protein of unknown function (DUF3047). compare
Psest_1366 +0.6 1.3 hypothetical protein compare
Psest_1625 +0.6 1.3 hypothetical protein compare
Psest_0091 +0.6 2.2 phosphonate C-P lyase system protein PhnL compare
Psest_4247 +0.6 1.9 Serine/threonine protein phosphatase compare
Psest_1484 +0.6 4.7 Thiol-disulfide isomerase and thioredoxins compare
Psest_3556 +0.6 2.4 2'-5' RNA ligase compare
Psest_3305 +0.6 4.0 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_4008 +0.6 4.6 PAS domain S-box compare
Psest_0655 +0.6 1.4 Chemotaxis signal transduction protein compare
Psest_2253 +0.6 1.3 small redox-active disulfide protein 2 compare
Psest_2643 +0.6 1.0 Beta-glucosidase-related glycosidases compare
Psest_2940 +0.6 2.0 Predicted membrane protein compare
Psest_3042 +0.6 1.0 Nitrate reductase cytochrome c-type subunit compare
Psest_0675 +0.6 1.8 Predicted periplasmic lipoprotein compare
Psest_0064 +0.6 1.5 Transcriptional regulator compare
Psest_2594 +0.6 1.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4265 +0.6 3.8 dTDP-4-dehydrorhamnose reductase compare
Psest_1504 +0.6 2.9 tol-pal system protein YbgF compare
Psest_3482 +0.6 1.9 Parvulin-like peptidyl-prolyl isomerase compare
Psest_3554 +0.6 1.3 Uncharacterized protein conserved in bacteria compare
Psest_2551 +0.6 4.2 1-aminocyclopropane-1-carboxylate deaminase compare
Psest_1067 +0.6 2.4 hypothetical protein compare
Psest_3834 +0.6 2.2 NAD(P)H-nitrite reductase compare
Psest_0264 +0.6 4.3 monofunctional biosynthetic peptidoglycan transglycosylase compare
Psest_3826 +0.6 2.1 Uncharacterized conserved protein compare
Psest_4146 +0.6 1.9 Flagellar basal-body P-ring protein compare
Psest_1849 +0.6 2.0 Predicted glutamine amidotransferase compare
Psest_3775 +0.6 2.6 Mg chelatase-related protein compare
Psest_0103 +0.6 1.3 triphosphoribosyl-dephospho-CoA synthase MdcB compare
Psest_2017 +0.5 2.0 Predicted acyltransferase compare
Psest_0390 +0.5 1.4 Short-chain dehydrogenases of various substrate specificities compare
Psest_0858 +0.5 2.6 Maltose operon periplasmic protein precursor (MalM). compare
Psest_3421 +0.5 1.9 hypothetical protein compare
Psest_3080 +0.5 1.6 AraC-type DNA-binding domain-containing proteins compare
Psest_0311 +0.5 2.2 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_1315 +0.5 1.0 hypothetical protein compare
Psest_3838 +0.5 1.5 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
Psest_0758 +0.5 3.3 Lactoylglutathione lyase and related lyases compare
Psest_2441 +0.5 3.1 hypothetical protein compare
Psest_0747 +0.5 2.3 Putative GTPases (G3E family) compare
Psest_3459 +0.5 1.3 hypothetical protein compare
Psest_0546 +0.5 2.2 hypothetical protein compare
Psest_0198 +0.5 3.0 TRAP transporter solute receptor, TAXI family compare
Psest_1489 +0.5 2.3 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_2532 +0.5 2.0 Uncharacterized protein conserved in bacteria compare
Psest_4055 +0.5 3.0 ABC transporter, substrate-binding protein, aliphatic sulfonates family compare
Psest_0856 +0.5 2.2 Predicted oxidoreductase compare
Psest_0110 +0.5 3.3 malonate transporter, MadM subunit compare
Psest_3790 +0.5 3.5 Cytochrome c5 compare
Psest_2445 +0.5 1.8 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
Psest_3460 +0.5 3.0 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily compare
Psest_3306 +0.5 1.7 conserved hypothetical integral membrane protein compare
Psest_0446 +0.5 3.4 hypothetical protein compare
Psest_4382 +0.5 4.6 hypothetical protein compare
Psest_2130 +0.5 1.8 exodeoxyribonuclease III compare
Psest_2414 +0.5 1.5 TolR protein compare
Psest_1809 +0.5 3.7 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_3455 +0.5 1.0 Dihaem cytochrome c. compare
Psest_4302 +0.5 2.2 hypothetical protein compare
Psest_4303 +0.5 0.5 HEAT repeat. compare
Psest_3973 +0.5 1.2 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_3389 +0.5 1.1 hypothetical protein compare
Psest_0666 +0.5 2.9 Uncharacterized protein conserved in bacteria compare
Psest_1249 +0.5 2.7 serine O-acetyltransferase compare
Psest_0240 +0.5 2.0 hypothetical protein compare
Psest_3894 +0.5 1.6 Carbon starvation protein, predicted membrane protein compare
Psest_4103 +0.5 0.7 AraC-type DNA-binding domain-containing proteins compare
Psest_2278 +0.5 1.6 coenzyme PQQ biosynthesis protein PqqD compare
Psest_0225 +0.5 0.8 Predicted permease, DMT superfamily compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in carbon source experiments