Experiment set7H4 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 defined media with Fusidic acid sodium salt 0.032 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_0954 -6.5 -8.9 Fe-S oxidoreductase compare
Psest_0153 -5.9 -5.8 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3647 -5.9 -4.1 Indole-3-glycerol phosphate synthase compare
Psest_2584 -5.5 -5.4 Phosphoribosylanthranilate isomerase compare
Psest_0152 -5.5 -5.3 Imidazoleglycerol-phosphate dehydratase compare
Psest_2591 -5.4 -3.7 3-isopropylmalate dehydratase, large subunit compare
Psest_2590 -5.4 -2.7 3-isopropylmalate dehydratase, small subunit compare
Psest_3866 -5.4 -10.4 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0508 -5.4 -5.2 gamma-glutamyl phosphate reductase compare
Psest_2578 -5.4 -12.9 O-succinylhomoserine sulfhydrylase compare
Psest_2579 -5.3 -3.7 amidophosphoribosyltransferase compare
Psest_3648 -5.3 -3.6 anthranilate phosphoribosyltransferase compare
Psest_3650 -5.2 -8.7 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1473 -5.2 -9.9 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0326 -5.2 -14.6 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_3226 -5.0 -2.5 Predicted membrane protein compare
Psest_1295 -5.0 -4.9 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3864 -5.0 -11.2 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_2589 -4.9 -12.4 3-isopropylmalate dehydrogenase compare
Psest_0953 -4.9 -11.1 iron-sulfur cluster-binding protein compare
Psest_0325 -4.8 -16.3 Putative threonine efflux protein compare
Psest_0155 -4.8 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3298 -4.7 -9.6 histidinol dehydrogenase compare
Psest_0952 -4.7 -4.6 Uncharacterized conserved protein compare
Psest_0279 -4.7 -6.4 methionine biosynthesis protein MetW compare
Psest_3299 -4.6 -12.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3384 -4.5 -9.5 glutamate 5-kinase compare
Psest_0062 -4.4 -7.9 tryptophan synthase, alpha subunit compare
Psest_0687 -4.3 -7.7 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3944 -4.3 -3.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_1509 -4.2 -13.0 quinolinate synthetase complex, A subunit compare
Psest_0280 -4.1 -13.5 homoserine O-acetyltransferase compare
Psest_0063 -4.1 -4.0 tryptophan synthase, beta subunit compare
Psest_3649 -4.1 -8.7 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1474 -4.0 -2.7 phosphoribosylaminoimidazole synthetase compare
Psest_3159 -3.9 -11.2 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1013 -3.9 -2.7 phosphoribosylamine--glycine ligase compare
Psest_1452 -3.8 -9.2 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_1012 -3.8 -6.7 Signal transduction histidine kinase compare
Psest_0718 -3.6 -4.9 nicotinate-nucleotide pyrophosphorylase compare
Psest_3810 -3.5 -2.4 orotate phosphoribosyltransferase compare
Psest_0489 -3.5 -2.4 phosphoserine phosphatase SerB compare
Psest_1510 -3.3 -5.0 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0537 -3.2 -2.2 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_1772 -3.1 -7.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0411 -3.0 -11.5 biotin synthetase compare
Psest_1947 -3.0 -2.0 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_3884 -2.8 -1.4 Signal transduction histidine kinase compare
Psest_3123 -2.7 -5.0 dihydroorotase, homodimeric type compare
Psest_0310 -2.7 -2.6 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_3910 -2.5 -2.3 Uncharacterized protein conserved in bacteria compare
Psest_0313 -2.5 -3.0 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3943 -2.4 -3.3 Phosphoribosyl-AMP cyclohydrolase compare
Psest_4103 -2.4 -2.2 AraC-type DNA-binding domain-containing proteins compare
Psest_0536 -2.3 -4.0 thiamine-phosphate pyrophosphorylase compare
Psest_1686 -2.3 -7.0 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1037 -2.2 -3.6 acetolactate synthase, small subunit compare
Psest_0170 -2.2 -6.4 5,10-methenyltetrahydrofolate synthetase compare
Psest_0309 -2.2 -1.5 RND family efflux transporter, MFP subunit compare
Psest_0311 -2.2 -3.5 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_2946 -2.1 -6.4 septum site-determining protein MinD compare
Psest_3998 -2.1 -5.6 glutamate--cysteine ligase compare
Psest_3494 -2.1 -2.0 hypothetical protein compare
Psest_0359 -2.0 -2.3 Transcriptional regulators compare
Psest_0327 -2.0 -6.0 Transcriptional regulator compare
Psest_3777 -2.0 -3.2 diguanylate cyclase (GGDEF) domain compare
Psest_2088 -2.0 -4.1 Uncharacterized protein conserved in bacteria compare
Psest_0191 -2.0 -1.1 PAS domain S-box compare
Psest_4084 -1.9 -12.0 oxaloacetate decarboxylase alpha subunit compare
Psest_4085 -1.9 -11.0 Biotin carboxylase compare
Psest_2329 -1.9 -12.8 Transcriptional regulator compare
Psest_3297 -1.9 -10.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_0993 -1.9 -10.7 Glucose-6-phosphate isomerase compare
Psest_0334 -1.8 -3.6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3565 -1.8 -2.4 hypothetical protein compare
Psest_0466 -1.8 -4.5 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_0390 -1.8 -2.4 Short-chain dehydrogenases of various substrate specificities compare
Psest_2719 -1.8 -4.9 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_0442 -1.7 -5.5 ATPases of the AAA+ class compare
Psest_1496 -1.7 -2.1 Holliday junction DNA helicase, RuvA subunit compare
Psest_1724 -1.6 -5.5 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_1242 -1.6 -3.3 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_4086 -1.6 -8.9 Transcriptional regulator compare
Psest_2232 -1.5 -11.3 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_3047 -1.5 -2.0 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_3937 -1.5 -1.4 ATP-dependent protease HslVU, ATPase subunit compare
Psest_3818 -1.4 -5.1 endoribonuclease L-PSP, putative compare
Psest_1421 -1.4 -3.2 Glutathione S-transferase compare
Psest_0097 -1.4 -0.9 phosphonates metabolism transcriptional regulator PhnF compare
Psest_0267 -1.4 -8.2 Uncharacterized enzyme of thiazole biosynthesis compare
Psest_0306 -1.4 -9.7 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_0514 -1.3 -5.4 lytic murein transglycosylase B compare
Psest_1056 -1.3 -1.5 2-isopropylmalate synthase, bacterial type compare
Psest_3092 -1.3 -2.6 ribonuclease III, bacterial compare
Psest_2887 -1.3 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_0415 -1.3 -3.9 dethiobiotin synthase compare
Psest_1704 -1.3 -2.4 Dehydrogenases (flavoproteins) compare
Psest_2104 -1.2 -2.8 IscR-regulated protein YhgI compare
Psest_0266 -1.2 -5.4 thiamine biosynthesis protein ThiS compare
Psest_0412 -1.2 -7.4 8-amino-7-oxononanoate synthase compare
Psest_0164 -1.2 -1.2 Glutaredoxin, GrxC family compare
Psest_1115 -1.2 -2.5 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3455 -1.2 -2.3 Dihaem cytochrome c. compare
Psest_1065 -1.2 -2.1 hypothetical protein compare
Psest_0414 -1.2 -4.1 biotin biosynthesis protein BioC compare
Psest_3174 -1.2 -9.3 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_4070 -1.1 -7.8 PAS domain S-box compare
Psest_0477 -1.1 -7.5 thiamine biosynthesis protein ThiC compare
Psest_1640 -1.1 -7.1 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_0955 -1.1 -3.4 D,L-lactate:H+ symporter (from data) compare
Psest_0207 -1.1 -1.8 hypothetical protein compare
Psest_0402 -1.1 -1.6 glycosyltransferase, MGT family compare
Psest_0078 -1.1 -0.9 hypothetical protein compare
Psest_2646 -1.1 -2.9 SOS regulatory protein LexA compare
Psest_3692 -1.0 -2.0 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_3013 -1.0 -1.5 cobyrinic acid a,c-diamide synthase compare
Psest_1305 -1.0 -3.5 Heat shock protein compare
Psest_2945 -1.0 -1.8 septum site-determining protein MinC compare
Psest_1292 -1.0 -5.8 monothiol glutaredoxin, Grx4 family compare
Psest_3084 -1.0 -1.0 methyltransferase, putative compare
Psest_4345 -1.0 -5.8 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_0951 -1.0 -5.8 FAD/FMN-containing dehydrogenases compare
Psest_0148 -1.0 -1.8 nitrate transport ATP-binding subunits C and D compare
Psest_2907 -1.0 -1.7 Protein of unknown function (DUF3618). compare
Psest_3883 -1.0 -3.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2218 -1.0 -2.3 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_4191 -1.0 -1.1 Transcriptional regulator compare
Psest_1814 -0.9 -8.2 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_4219 -0.9 -1.6 DNA polymerase I compare
Psest_0297 -0.9 -3.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3351 -0.9 -3.7 peptide chain release factor 3 compare
Psest_0013 -0.9 -4.3 Lauroyl/myristoyl acyltransferase compare
Psest_0094 -0.9 -1.2 Uncharacterized enzyme of phosphonate metabolism compare
Psest_2651 -0.9 -2.5 DNA topoisomerase I, bacterial compare
Psest_0208 -0.9 -3.9 Uncharacterized protein conserved in bacteria compare
Psest_0212 -0.9 -1.0 exodeoxyribonuclease V, gamma subunit compare
Psest_3459 -0.9 -1.2 hypothetical protein compare
Psest_1837 -0.9 -6.3 Endoglucanase compare
Psest_2864 -0.9 -2.5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0393 -0.9 -3.9 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1195 -0.9 -2.3 xanthine permease compare
Psest_2532 -0.9 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_0515 -0.9 -3.2 rare lipoprotein A compare
Psest_2613 -0.9 -2.0 hypothetical protein compare
Psest_1511 -0.9 -3.9 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0485 -0.9 -2.3 clan AA aspartic protease, TIGR02281 family compare
Psest_3228 -0.9 -6.1 Zn-dependent protease with chaperone function compare
Psest_3488 -0.9 -2.3 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_0355 -0.8 -1.4 Glycine cleavage system regulatory protein compare
Psest_1031 -0.8 -4.6 Uncharacterized protein conserved in bacteria compare
Psest_0243 -0.8 -0.8 hypothetical protein compare
Psest_3042 -0.8 -1.7 Nitrate reductase cytochrome c-type subunit compare
Psest_0119 -0.8 -1.3 hypothetical protein compare
Psest_1879 -0.8 -2.2 Trk-type K+ transport systems, membrane components compare
Psest_3904 -0.8 -0.5 hypothetical protein compare
Psest_2448 -0.8 -1.6 AraC-type DNA-binding domain-containing proteins compare
Psest_3893 -0.8 -1.7 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_4098 -0.8 -1.6 Superfamily I DNA and RNA helicases compare
Psest_2909 -0.8 -2.3 hypothetical protein compare
Psest_2333 -0.8 -1.4 Protein of unknown function (DUF3359). compare
Psest_3050 -0.8 -3.1 tRNA_Gly_CCC compare
Psest_3339 -0.8 -4.0 Signal transduction histidine kinase compare
Psest_3476 -0.8 -0.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2762 -0.8 -1.5 hypothetical protein compare
Psest_2358 -0.8 -1.3 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1643 -0.8 -1.0 hypothetical protein compare
Psest_1582 -0.8 -2.0 Protein of unknown function (DUF3087). compare
Psest_0697 -0.8 -2.2 ribosomal protein L9 compare
Psest_0521 -0.8 -5.3 lytic murein transglycosylase compare
Psest_3809 -0.8 -2.6 hypothetical protein compare
Psest_0413 -0.8 -2.7 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0853 -0.8 -1.9 6-phosphogluconolactonase compare
Psest_3990 -0.8 -4.0 PAP2 superfamily. compare
Psest_2379 -0.8 -4.8 PAS domain S-box compare
Psest_2316 -0.8 -6.2 phosphoenolpyruvate synthase compare
Psest_0842 -0.8 -1.6 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_3550 -0.7 -1.2 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_2285 -0.7 -2.3 ATP-dependent protease La compare
Psest_1144 -0.7 -1.6 AmpG-related permease compare
Psest_3721 -0.7 -3.7 Malic enzyme compare
Psest_3031 -0.7 -0.9 hypothetical protein compare
Psest_3555 -0.7 -1.7 Predicted methyltransferase compare
Psest_0082 -0.7 -1.5 Domain of unknown function (DUF892). compare
Psest_0192 -0.7 -3.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1334 -0.7 -4.9 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II compare
Psest_2714 -0.7 -1.6 7-cyano-7-deazaguanine reductase compare
Psest_0218 -0.7 -1.6 Acyl-CoA hydrolase compare
Psest_3767 -0.7 -2.4 tyrosine recombinase XerC compare
Psest_3101 -0.7 -5.1 L-aspartate oxidase compare
Psest_1306 -0.7 -0.9 hypothetical protein compare
Psest_0510 -0.7 -1.7 iojap-like ribosome-associated protein compare
Psest_2414 -0.7 -1.8 TolR protein compare
Psest_0281 -0.7 -4.1 Dynamin family. compare
Psest_3478 -0.7 -0.7 Cytochrome B561 compare
Psest_0722 -0.7 -3.6 Predicted ATPase compare
Psest_0498 -0.7 -0.9 ribosome small subunit-dependent GTPase A compare
Psest_3212 -0.6 -2.7 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_1339 -0.6 -3.8 ATP-dependent helicase HrpA conserved
Psest_1053 -0.6 -1.2 hypothetical protein compare
Psest_3637 -0.6 -1.1 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in stress experiments

For stress Fusidic acid sodium salt across organisms