Experiment set7H34 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 defined media with Benzalkonium Chloride 0.002 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_0152 -5.3 -6.3 Imidazoleglycerol-phosphate dehydratase compare
Psest_0326 -5.1 -10.4 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0155 -4.9 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0153 -4.8 -12.1 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_2590 -4.7 -1.4 3-isopropylmalate dehydratase, small subunit compare
Psest_1635 -4.6 -24.1 Signal transduction histidine kinase compare
Psest_3306 -4.6 -3.1 conserved hypothetical integral membrane protein compare
Psest_0325 -4.5 -16.9 Putative threonine efflux protein compare
Psest_1153 -4.5 -16.8 Cation/multidrug efflux pump compare
Psest_0181 -4.5 -8.0 glycine cleavage system T protein compare
Psest_3299 -4.5 -9.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3384 -4.4 -8.0 glutamate 5-kinase compare
Psest_0953 -4.4 -10.7 iron-sulfur cluster-binding protein compare
Psest_0508 -4.4 -7.9 gamma-glutamyl phosphate reductase compare
Psest_0476 -4.4 -6.7 type I secretion outer membrane protein, TolC family conserved
Psest_0279 -4.4 -7.3 methionine biosynthesis protein MetW compare
Psest_3647 -4.4 -5.2 Indole-3-glycerol phosphate synthase compare
Psest_0954 -4.3 -8.6 Fe-S oxidoreductase compare
Psest_3866 -4.3 -15.2 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3307 -4.3 -4.2 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_2578 -4.3 -9.5 O-succinylhomoserine sulfhydrylase compare
Psest_3305 -4.3 -5.1 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_0285 -4.3 -9.9 pilus retraction protein PilT compare
Psest_1115 -4.2 -3.9 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3303 -4.2 -4.1 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2025 -4.2 -1.2 cold shock domain protein CspD compare
Psest_2379 -4.2 -8.9 PAS domain S-box compare
Psest_3929 -4.2 -5.7 hypothetical protein conserved
Psest_3648 -4.2 -5.7 anthranilate phosphoribosyltransferase compare
Psest_3864 -4.2 -13.0 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0280 -4.1 -13.0 homoserine O-acetyltransferase compare
Psest_3322 -4.1 -16.0 TIGR02099 family protein compare
Psest_0537 -4.1 -2.4 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_2260 -4.1 -17.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1509 -4.0 -9.0 quinolinate synthetase complex, A subunit compare
Psest_3650 -4.0 -8.6 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_1154 -4.0 -8.1 RND family efflux transporter, MFP subunit conserved
Psest_3317 -4.0 -5.2 Phosphotransferase System HPr (HPr) Family compare
Psest_0267 -3.9 -12.9 Uncharacterized enzyme of thiazole biosynthesis compare
Psest_0062 -3.8 -9.2 tryptophan synthase, alpha subunit compare
Psest_2584 -3.8 -4.5 Phosphoribosylanthranilate isomerase compare
Psest_2325 -3.8 -8.7 alpha-L-glutamate ligase-related protein compare
Psest_0346 -3.7 -3.6 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_1724 -3.7 -4.2 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2864 -3.7 -5.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3298 -3.6 -10.9 histidinol dehydrogenase compare
Psest_0266 -3.6 -7.3 thiamine biosynthesis protein ThiS compare
Psest_3862 -3.6 -15.5 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0063 -3.6 -4.3 tryptophan synthase, beta subunit compare
Psest_3721 -3.6 -8.3 Malic enzyme compare
Psest_2579 -3.6 -3.5 amidophosphoribosyltransferase compare
Psest_3944 -3.6 -2.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_2945 -3.6 -2.3 septum site-determining protein MinC compare
Psest_2712 -3.5 -5.8 Surface lipoprotein compare
Psest_1452 -3.5 -8.0 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_2323 -3.4 -12.3 Uncharacterized protein conserved in archaea compare
Psest_0489 -3.4 -3.3 phosphoserine phosphatase SerB compare
Psest_0687 -3.4 -6.8 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_0466 -3.3 -3.9 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2324 -3.3 -13.7 hypothetical protein compare
Psest_3720 -3.3 -12.7 penicillin-binding protein, 1A family compare
Psest_2589 -3.2 -11.0 3-isopropylmalate dehydrogenase compare
Psest_0445 -3.2 -15.6 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3129 -3.2 -1.9 tyrosine recombinase XerD compare
Psest_1686 -3.2 -4.9 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0393 -3.2 -3.1 Methylase of chemotaxis methyl-accepting proteins compare
Psest_1772 -3.2 -5.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3645 -3.2 -11.2 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0477 -3.2 -13.4 thiamine biosynthesis protein ThiC compare
Psest_1295 -3.1 -4.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3304 -3.1 -5.8 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_0536 -3.1 -5.4 thiamine-phosphate pyrophosphorylase compare
Psest_0442 -3.0 -2.1 ATPases of the AAA+ class compare
Psest_1037 -3.0 -3.2 acetolactate synthase, small subunit compare
Psest_3338 -3.0 -1.7 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_0952 -3.0 -3.3 Uncharacterized conserved protein compare
Psest_2933 -3.0 -12.1 Signal transduction histidine kinase compare
Psest_0411 -2.8 -9.6 biotin synthetase compare
Psest_1741 -2.8 -2.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3884 -2.8 -0.8 Signal transduction histidine kinase compare
Psest_3818 -2.8 -7.8 endoribonuclease L-PSP, putative compare
Psest_2333 -2.8 -1.2 Protein of unknown function (DUF3359). compare
Psest_2645 -2.8 -8.2 Transcriptional regulator compare
Psest_3189 -2.8 -4.4 hypothetical protein compare
Psest_3226 -2.8 -1.1 Predicted membrane protein compare
Psest_0413 -2.8 -7.9 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_1640 -2.7 -9.9 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_0013 -2.7 -6.7 Lauroyl/myristoyl acyltransferase compare
Psest_3649 -2.7 -7.7 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_4345 -2.7 -11.7 Bacteriophytochrome (light-regulated signal transduction histidine kinase) compare
Psest_0136 -2.7 -13.1 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_3810 -2.7 -2.6 orotate phosphoribosyltransferase compare
Psest_0397 -2.6 -10.8 Small-conductance mechanosensitive channel compare
Psest_0306 -2.6 -15.3 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_3843 -2.6 -9.6 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_1765 -2.5 -8.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1473 -2.5 -7.2 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_1947 -2.5 -1.7 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_1167 -2.5 -1.0 hypothetical protein compare
Psest_2591 -2.5 -3.1 3-isopropylmalate dehydratase, large subunit compare
Psest_4097 -2.5 -11.8 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
Psest_3092 -2.4 -2.4 ribonuclease III, bacterial compare
Psest_0718 -2.4 -4.2 nicotinate-nucleotide pyrophosphorylase compare
Psest_0313 -2.4 -2.8 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2088 -2.3 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_1217 -2.3 -8.2 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein conserved
Psest_1922 -2.3 -9.8 aminopeptidase N, Escherichia coli type compare
Psest_0138 -2.3 -10.3 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_1940 -2.3 -4.0 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_2329 -2.3 -12.9 Transcriptional regulator compare
Psest_0414 -2.3 -5.1 biotin biosynthesis protein BioC compare
Psest_1510 -2.3 -2.2 Putative Zn-dependent protease, contains TPR repeats compare
Psest_3777 -2.3 -3.4 diguanylate cyclase (GGDEF) domain compare
Psest_1939 -2.3 -6.8 Tetratricopeptide repeat. compare
Psest_0300 -2.2 -10.0 Methyl-accepting chemotaxis protein compare
Psest_2586 -2.2 -15.8 FimV N-terminal domain compare
Psest_3745 -2.2 -5.2 Uncharacterized enzyme of heme biosynthesis compare
Psest_0998 -2.2 -2.7 poly(A) polymerase compare
Psest_3565 -2.2 -1.9 hypothetical protein compare
Psest_3943 -2.2 -2.9 Phosphoribosyl-AMP cyclohydrolase compare
Psest_1943 -2.2 -8.5 MoxR-like ATPases compare
Psest_3188 -2.1 -3.8 hypothetical protein compare
Psest_1527 -2.1 -11.8 Na+/proline symporter compare
Psest_1957 -2.1 -11.6 outer membrane porin, OprD family. compare
Psest_0412 -2.1 -10.3 8-amino-7-oxononanoate synthase compare
Psest_0302 -2.1 -16.2 Chemotaxis protein histidine kinase and related kinases compare
Psest_3883 -2.1 -5.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3998 -2.1 -6.9 glutamate--cysteine ligase compare
Psest_2646 -2.0 -2.8 SOS regulatory protein LexA compare
Psest_0482 -2.0 -4.2 yqiA-like hydrolase, affects the cell envelope (from data) compare
Psest_4124 -2.0 -3.3 hypothetical protein compare
Psest_1474 -2.0 -4.0 phosphoribosylaminoimidazole synthetase compare
Psest_3374 -2.0 -10.2 Tfp pilus assembly protein, tip-associated adhesin PilY1 compare
Psest_0186 -2.0 -2.6 Protein-disulfide isomerase compare
Psest_3159 -2.0 -5.5 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2276 -2.0 -5.9 Aldehyde dehydrogenase (EC 1.2.1.3) (from data) conserved
Psest_1122 -2.0 -13.8 putative adhesin (DUF1302) (from data) compare
Psest_1163 -2.0 -3.9 diguanylate cyclase (GGDEF) domain compare
Psest_2504 -2.0 -4.7 flagellar biosynthetic protein FliS compare
Psest_3323 -1.9 -4.4 ribonuclease, Rne/Rng family compare
Psest_1824 -1.9 -3.1 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_0218 -1.9 -2.4 Acyl-CoA hydrolase compare
Psest_4298 -1.9 -0.9 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_4191 -1.9 -1.3 Transcriptional regulator compare
Psest_3286 -1.9 -6.4 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases compare
Psest_0349 -1.9 -3.9 DNA polymerase III, alpha subunit (gram-positive type) compare
Psest_3228 -1.9 -8.4 Zn-dependent protease with chaperone function compare
Psest_1938 -1.9 -5.4 hypothetical protein compare
Psest_2714 -1.9 -2.2 7-cyano-7-deazaguanine reductase compare
Psest_1496 -1.9 -1.5 Holliday junction DNA helicase, RuvA subunit compare
Psest_2507 -1.9 -11.4 Flagellin and related hook-associated proteins compare
Psest_1625 -1.9 -2.9 hypothetical protein compare
Psest_1942 -1.9 -7.3 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_3719 -1.8 -9.9 type IV pilus assembly protein PilM compare
Psest_1743 -1.8 -6.1 Chemotaxis protein histidine kinase and related kinases compare
Psest_2967 -1.8 -2.8 flagellar basal-body rod protein FlgC compare
Psest_0257 -1.8 -2.8 Predicted Zn-dependent peptidases compare
Psest_4396 -1.8 -7.3 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_0691 -1.8 -10.1 ribonuclease R compare
Psest_2961 -1.8 -3.5 Flagellar basal-body P-ring protein compare
Psest_0298 -1.8 -5.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3716 -1.8 -8.7 Tfp pilus assembly protein PilP compare
Psest_3064 -1.7 -2.4 hypothetical protein compare
Psest_0139 -1.7 -4.1 ABC-type histidine transport system, ATPase component compare
Psest_1013 -1.7 -3.2 phosphoribosylamine--glycine ligase compare
Psest_3766 -1.7 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_2946 -1.7 -3.7 septum site-determining protein MinD compare
Psest_1647 -1.7 -3.7 Lhr-like helicases compare
Psest_0533 -1.7 -4.3 Sel1 repeat. compare
Psest_3717 -1.7 -5.5 Tfp pilus assembly protein PilO compare
Psest_3297 -1.7 -7.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_2312 -1.6 -8.1 Small-conductance mechanosensitive channel compare
Psest_4086 -1.6 -9.0 Transcriptional regulator compare
Psest_0301 -1.6 -7.3 Methylase of chemotaxis methyl-accepting proteins compare
Psest_4085 -1.6 -11.3 Biotin carboxylase compare
Psest_4243 -1.6 -1.4 type VI secretion lipoprotein, VC_A0113 family compare
Psest_0193 -1.6 -0.9 conserved hypothetical protein compare
Psest_4113 -1.6 -7.8 hypothetical protein compare
Psest_0347 -1.6 -10.0 large component of pyruvate/D-alanine transporter (actP-like) (from data) compare
Psest_1567 -1.6 -2.9 Transcriptional regulator compare
Psest_2983 -1.6 -2.2 hypothetical protein compare
Psest_4220 -1.6 -2.7 Protein of unknown function (DUF2782). compare
Psest_0650 -1.6 -2.9 RNA polymerase sigma factor, sigma-70 family compare
Psest_1532 -1.6 -3.6 DNA recombination-dependent growth factor C compare
Psest_2650 -1.6 -2.6 hypothetical protein compare
Psest_3718 -1.6 -4.7 Tfp pilus assembly protein PilN compare
Psest_2968 -1.6 -6.5 flagellar basal-body rod protein FlgB compare
Psest_3715 -1.6 -9.7 type IV pilus secretin (or competence protein) PilQ compare
Psest_1643 -1.6 -1.1 hypothetical protein compare
Psest_4084 -1.6 -10.4 oxaloacetate decarboxylase alpha subunit compare
Psest_1397 -1.6 -2.6 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
Psest_1975 -1.5 -5.1 Predicted transcriptional regulators compare
Psest_0137 -1.5 -6.7 amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family compare
Psest_1099 -1.5 -10.1 Type I restriction-modification system methyltransferase subunit compare
Psest_0831 -1.5 -0.8 hypothetical protein compare
Psest_0297 -1.5 -3.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3960 -1.5 -1.4 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1058 -1.5 -2.2 ribosomal-protein-alanine acetyltransferase compare
Psest_0457 -1.5 -2.0 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3519 -1.5 -2.1 Uncharacterized conserved protein compare


Specific Phenotypes

For 74 genes in this experiment

For stress Benzalkonium Chloride in Pseudomonas stutzeri RCH2

For stress Benzalkonium Chloride across organisms