Experiment set7H34 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 defined media with Benzalkonium Chloride 0.002 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Psest_0993 +6.1 45.4 Glucose-6-phosphate isomerase compare
Psest_2232 +5.5 43.0 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_0999 +4.9 19.4 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1725 +3.8 28.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1704 +3.6 9.8 Dehydrogenases (flavoproteins) compare
Psest_1994 +3.5 17.1 Amidases related to nicotinamidase compare
Psest_0697 +3.5 9.8 ribosomal protein L9 compare
Psest_0740 +3.5 7.2 Transcriptional regulator compare
Psest_0722 +3.5 25.1 Predicted ATPase compare
Psest_1804 +3.4 13.9 Superfamily II DNA and RNA helicases compare
Psest_0969 +3.4 10.1 transcription elongation factor GreA compare
Psest_4273 +3.3 24.7 Lysophospholipase compare
Psest_3100 +3.3 25.3 RNA polymerase sigma factor RpoE compare
Psest_0417 +3.2 14.6 Acyl-CoA dehydrogenases compare
Psest_2530 +3.1 17.8 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_2950 +3.0 12.2 putative NAD(P)H quinone oxidoreductase, PIG3 family compare
Psest_2288 +3.0 16.1 trigger factor compare
Psest_3296 +2.9 19.7 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_2038 +2.9 16.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain conserved
Psest_2267 +2.9 18.6 PAS domain S-box conserved
Psest_2268 +2.9 9.3 Alcohol dehydrogenase, class IV conserved
Psest_3573 +2.8 10.9 dTDP-4-dehydrorhamnose reductase compare
Psest_2527 +2.8 20.1 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_2229 +2.6 10.6 Uncharacterized protein conserved in bacteria compare
Psest_2083 +2.6 11.4 Putative sterol carrier protein compare
Psest_0959 +2.5 6.8 Uncharacterized protein conserved in bacteria compare
Psest_0192 +2.5 14.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2027 +2.4 16.0 ATP-dependent Clp protease ATP-binding subunit clpA compare
Psest_1805 +2.4 8.4 integration host factor, beta subunit compare
Psest_0165 +2.4 3.2 protein-export chaperone SecB compare
Psest_1000 +2.3 9.4 PAS domain S-box compare
Psest_0692 +2.3 6.0 rRNA methylase, putative, group 3 compare
Psest_1840 +2.3 19.7 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_3117 +2.3 10.3 electron transport complex, RnfABCDGE type, E subunit compare
Psest_3115 +2.3 14.4 electron transport complex, RnfABCDGE type, D subunit compare
Psest_1280 +2.3 19.8 TonB-dependent copper receptor compare
Psest_2026 +2.2 5.1 Uncharacterized conserved protein compare
Psest_0191 +2.2 3.0 PAS domain S-box compare
Psest_2039 +2.2 4.6 PQQ-dependent catabolism-associated CXXCW motif protein compare
Psest_1999 +2.2 3.7 pseudouridine synthase compare
Psest_1249 +2.2 12.1 serine O-acetyltransferase compare
Psest_0170 +2.1 12.3 5,10-methenyltetrahydrofolate synthetase compare
Psest_4274 +2.1 6.6 hypothetical protein compare
Psest_0956 +2.1 13.2 Transcriptional regulators compare
Psest_2532 +2.1 8.3 Uncharacterized protein conserved in bacteria compare
Psest_0696 +2.0 11.2 hypothetical protein compare
Psest_3114 +2.0 13.6 electron transport complex, RnfABCDGE type, C subunit compare
Psest_0487 +2.0 6.7 Uncharacterized protein conserved in bacteria compare
Psest_4335 +2.0 6.2 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems compare
Psest_3790 +1.9 14.1 Cytochrome c5 compare
Psest_1986 +1.9 2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
Psest_2273 +1.9 8.6 coenzyme PQQ biosynthesis protein B conserved
Psest_3112 +1.9 8.3 electron transport complex, RnfABCDGE type, A subunit compare
Psest_3212 +1.9 6.3 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_0693 +1.9 10.1 His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_0717 +1.8 14.0 Protein of unknown function (DUF1631). compare
Psest_0312 +1.8 7.2 Superfamily II DNA and RNA helicases compare
Psest_3400 +1.8 2.7 Copper resistance protein D. compare
Psest_0950 +1.8 8.4 hypothetical protein compare
Psest_2976 +1.8 2.5 hypothetical protein compare
Psest_3938 +1.7 4.7 Uncharacterized protein conserved in bacteria compare
Psest_2285 +1.7 5.6 ATP-dependent protease La compare
Psest_3575 +1.7 6.1 Arabinose efflux permease compare
Psest_1518 +1.7 2.1 tRNA_Ser_CGA compare
Psest_2726 +1.7 4.0 Rhodanese-related sulfurtransferase compare
Psest_1856 +1.7 4.5 Permeases of the drug/metabolite transporter (DMT) superfamily compare
Psest_3216 +1.7 15.6 diguanylate cyclase (GGDEF) domain compare
Psest_1235 +1.7 9.6 Leucyl aminopeptidase compare
Psest_3113 +1.7 4.9 electron transport complex, RnfABCDGE type, B subunit compare
Psest_1814 +1.7 11.7 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_3910 +1.7 1.7 Uncharacterized protein conserved in bacteria compare
Psest_1140 +1.7 7.2 2-dehydropantoate 2-reductase compare
Psest_2274 +1.7 4.5 coenzyme PQQ biosynthesis protein A compare
Psest_2381 +1.7 10.7 hypothetical protein compare
Psest_2304 +1.6 2.4 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Psest_1472 +1.6 8.8 Protein of unknown function (DUF3108). compare
Psest_2948 +1.6 8.2 pseudouridine synthase, RluA family compare
Psest_2044 +1.6 5.2 ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system compare
Psest_1879 +1.6 5.6 Trk-type K+ transport systems, membrane components compare
Psest_2047 +1.6 3.8 Signal transduction histidine kinase compare
Psest_0226 +1.6 4.9 Domain of unknown function (DUF3482)./GTPase of unknown function. compare
Psest_1489 +1.6 6.2 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_1470 +1.6 10.4 succinyldiaminopimelate transaminase compare
Psest_3217 +1.6 14.3 PAS domain S-box compare
Psest_1782 +1.5 2.5 Predicted transcriptional regulators compare
Psest_0028 +1.5 7.5 Coproporphyrinogen III oxidase compare
Psest_2551 +1.5 8.8 1-aminocyclopropane-1-carboxylate deaminase compare
Psest_0408 +1.5 5.2 Protein involved in catabolism of external DNA compare
Psest_0510 +1.5 6.4 iojap-like ribosome-associated protein compare
Psest_3974 +1.5 5.6 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_2000 +1.5 5.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_1484 +1.5 10.0 Thiol-disulfide isomerase and thioredoxins compare
Psest_3187 +1.5 7.4 hypothetical protein compare
Psest_2531 +1.5 10.9 cytochrome c oxidase accessory protein FixG compare
Psest_3694 +1.4 6.1 Predicted acyltransferase compare
Psest_2270 +1.4 6.5 coenzyme PQQ biosynthesis protein E conserved
Psest_4098 +1.4 3.2 Superfamily I DNA and RNA helicases compare
Psest_2272 +1.4 8.2 coenzyme PQQ biosynthesis protein C compare
Psest_0446 +1.4 7.1 hypothetical protein compare
Psest_0994 +1.4 6.9 L-aspartate-alpha-decarboxylase compare
Psest_2778 +1.4 2.5 Parvulin-like peptidyl-prolyl isomerase compare
Psest_0987 +1.4 3.1 Predicted periplasmic or secreted lipoprotein compare
Psest_1478 +1.4 8.6 Predicted membrane protein compare
Psest_1147 +1.4 3.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3170 +1.3 5.6 molybdenum cofactor biosynthesis protein MoaC compare
Psest_1248 +1.3 7.2 RNA methyltransferase, TrmH family, group 1 compare
Psest_4082 +1.3 3.7 hypothetical protein compare
Psest_2321 +1.3 6.8 methylisocitrate lyase compare
Psest_1813 +1.3 7.7 pseudaminic acid biosynthesis-associated protein PseG compare
Psest_2719 +1.3 6.0 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_1468 +1.3 4.3 hypothetical protein compare
Psest_1768 +1.3 2.8 thiopurine S-methyltransferase, Se/Te detoxification family compare
Psest_0779 +1.3 4.0 tyrosine aminotransferase (EC 2.6.1.57) (from data) compare
Psest_0709 +1.3 8.0 pseudouridine synthase, RluA family compare
Psest_2816 +1.3 7.6 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase compare
Psest_3693 +1.3 1.8 Glycosyltransferases involved in cell wall biogenesis compare
Psest_2441 +1.3 6.0 hypothetical protein compare
Psest_1139 +1.3 6.3 PAS domain S-box compare
Psest_1974 +1.3 6.1 integration host factor, alpha subunit compare
Psest_3973 +1.3 2.3 Anti-sigma regulatory factor (Ser/Thr protein kinase) compare
Psest_0309 +1.3 1.6 RND family efflux transporter, MFP subunit compare
Psest_2042 +1.3 8.1 PQQ-dependent catabolism-associated beta-propeller protein compare
Psest_2775 +1.3 4.2 Glycerol-3-phosphate dehydrogenase compare
Psest_2316 +1.3 9.7 phosphoenolpyruvate synthase compare
Psest_2557 +1.3 2.9 Protein of unknown function (DUF2474). compare
Psest_2060 +1.3 7.8 PQQ-dependent dehydrogenase, methanol/ethanol family compare
Psest_3690 +1.2 4.2 Acyl carrier protein compare
Psest_0310 +1.2 4.1 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_1661 +1.2 2.8 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
Psest_4305 +1.2 5.6 NAD-dependent aldehyde dehydrogenases compare
Psest_1242 +1.2 2.5 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_3048 +1.2 3.3 hypothetical protein compare
Psest_0546 +1.2 5.5 hypothetical protein compare
Psest_1476 +1.2 6.6 Predicted permease compare
Psest_0925 +1.2 4.7 Uncharacterized conserved protein compare
Psest_0923 +1.2 7.5 Glutaredoxin, GrxC family compare
Psest_3237 +1.2 2.1 hypothetical protein compare
Psest_2538 +1.2 0.9 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_1508 +1.2 8.6 succinate CoA transferases compare
Psest_1483 +1.2 4.2 hypothetical protein compare
Psest_1464 +1.2 6.7 Selenocysteine lyase compare
Psest_0264 +1.2 7.4 monofunctional biosynthetic peptidoglycan transglycosylase compare
Psest_0958 +1.2 7.9 Oligoketide cyclase/lipid transport protein compare
Psest_3734 +1.2 6.3 Uncharacterized protein involved in an early stage of isoprenoid biosynthesis compare
Psest_2793 +1.2 3.8 hypothetical protein compare
Psest_0020 +1.2 6.0 K+ transport systems, NAD-binding component compare
Psest_2317 +1.2 5.7 Uncharacterized protein conserved in bacteria compare
Psest_3462 +1.2 4.9 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3434 +1.1 9.3 Serine phosphatase RsbU, regulator of sigma subunit compare
Psest_2327 +1.1 4.6 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_4008 +1.1 8.5 PAS domain S-box compare
Psest_1873 +1.1 4.4 Predicted permease, DMT superfamily compare
Psest_0514 +1.1 6.1 lytic murein transglycosylase B compare
Psest_2447 +1.1 1.5 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2720 +1.1 4.6 Enoyl-CoA hydratase/carnithine racemase compare
Psest_3116 +1.1 5.9 electron transport complex, RnfABCDGE type, G subunit compare
Psest_3314 +1.1 6.2 ribosomal subunit interface protein compare
Psest_3698 +1.1 3.7 Predicted exporter compare
Psest_3235 +1.1 9.5 Protein of unknown function (DUF1329). compare
Psest_2429 +1.1 3.9 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_1504 +1.1 3.8 tol-pal system protein YbgF compare
Psest_1001 +1.1 3.0 hypothetical protein compare
Psest_0015 +1.1 1.0 Tetratricopeptide repeat. compare
Psest_1809 +1.1 8.2 Membrane protein involved in the export of O-antigen and teichoic acid compare
Psest_1087 +1.1 1.2 uncharacterized peroxidase-related enzyme compare
Psest_3975 +1.1 8.2 Signal transduction histidine kinase compare
Psest_1308 +1.1 4.4 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_2055 +1.1 5.4 cytochrome c550 (from data) conserved
Psest_0891 +1.1 3.9 Uncharacterized protein conserved in bacteria compare
Psest_1471 +1.1 3.9 Predicted membrane protein compare
Psest_0105 +1.1 3.5 malonate decarboxylase, beta subunit compare
Psest_1819 +1.1 9.4 Nucleoside-diphosphate-sugar epimerases compare
Psest_2382 +1.1 6.9 coenzyme PQQ biosynthesis probable peptidase PqqF compare
Psest_3456 +1.1 1.2 RNA polymerase sigma factor, sigma-70 family compare
Psest_2271 +1.1 3.2 coenzyme PQQ biosynthesis protein PqqD compare
Psest_2427 +1.1 5.2 SH3 domain protein compare
Psest_2773 +1.1 6.9 glycerol kinase compare
Psest_1522 +1.1 2.6 hypothetical protein compare
Psest_3784 +1.1 2.3 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_3213 +1.1 5.4 acetate kinase compare
Psest_3543 +1.1 2.5 hypothetical protein compare
Psest_3770 +1.1 4.8 secondary thiamine-phosphate synthase enzyme compare
Psest_1491 +1.1 2.6 Cold shock proteins compare
Psest_3850 +1.1 0.9 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1842 +1.1 4.4 Chemotaxis signal transduction protein compare
Psest_1639 +1.1 2.5 23S rRNA (uracil-5-)-methyltransferase RumA compare
Psest_3963 +1.1 8.1 PAS domain S-box compare
Psest_0379 +1.0 3.8 Galactose mutarotase and related enzymes compare
Psest_1463 +1.0 1.1 SufE protein probably involved in Fe-S center assembly compare
Psest_0351 +1.0 3.3 hypothetical protein compare
Psest_2490 +1.0 6.7 succinyl-CoA synthetase, alpha subunit compare
Psest_1322 +1.0 1.2 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_3421 +1.0 2.7 hypothetical protein compare
Psest_0260 +1.0 1.8 Cell division protein compare
Psest_3688 +1.0 5.3 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Psest_2104 +1.0 2.7 IscR-regulated protein YhgI compare
Psest_2040 +1.0 6.6 alcohol ABC transporter, permease protein compare
Psest_3480 +1.0 1.1 molybdenum cofactor biosynthesis protein B, proteobacterial compare
Psest_2716 +1.0 3.4 ABC-type multidrug transport system, ATPase component compare
Psest_3976 +1.0 7.7 PAS domain S-box compare


Specific Phenotypes

For 74 genes in this experiment

For stress Benzalkonium Chloride in Pseudomonas stutzeri RCH2

For stress Benzalkonium Chloride across organisms