Experiment set7H22 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 defined media with Doxycycline hyclate 0.0006 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_2590 -5.3 -2.3 3-isopropylmalate dehydratase, small subunit compare
Psest_2591 -4.2 -4.9 3-isopropylmalate dehydratase, large subunit compare
Psest_2579 -4.2 -9.3 amidophosphoribosyltransferase compare
Psest_2584 -3.9 -9.6 Phosphoribosylanthranilate isomerase compare
Psest_3648 -3.9 -8.2 anthranilate phosphoribosyltransferase compare
Psest_3944 -3.7 -3.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_1473 -3.6 -10.3 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3226 -3.5 -2.1 Predicted membrane protein compare
Psest_2589 -3.5 -12.7 3-isopropylmalate dehydrogenase compare
Psest_3159 -3.3 -11.0 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1013 -3.2 -4.8 phosphoribosylamine--glycine ligase compare
Psest_1474 -3.1 -6.6 phosphoribosylaminoimidazole synthetase compare
Psest_0062 -2.9 -10.0 tryptophan synthase, alpha subunit compare
Psest_3298 -2.9 -13.0 histidinol dehydrogenase compare
Psest_0687 -2.8 -10.2 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2333 -2.7 -2.3 Protein of unknown function (DUF3359). compare
Psest_0718 -2.7 -6.0 nicotinate-nucleotide pyrophosphorylase compare
Psest_2578 -2.7 -14.0 O-succinylhomoserine sulfhydrylase compare
Psest_0952 -2.7 -4.4 Uncharacterized conserved protein compare
Psest_3304 -2.7 -7.9 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_2712 -2.6 -6.7 Surface lipoprotein compare
Psest_0153 -2.6 -11.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0152 -2.5 -7.1 Imidazoleglycerol-phosphate dehydratase compare
Psest_4103 -2.5 -2.4 AraC-type DNA-binding domain-containing proteins compare
Psest_3810 -2.5 -3.7 orotate phosphoribosyltransferase compare
Psest_1452 -2.5 -11.0 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_3650 -2.4 -12.4 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0953 -2.4 -10.0 iron-sulfur cluster-binding protein compare
Psest_0954 -2.4 -7.3 Fe-S oxidoreductase compare
Psest_3303 -2.2 -7.6 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_0466 -2.2 -6.2 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3647 -2.2 -5.4 Indole-3-glycerol phosphate synthase compare
Psest_3299 -2.2 -11.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0063 -2.1 -8.0 tryptophan synthase, beta subunit compare
Psest_3890 -2.1 -1.4 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_0078 -2.1 -1.3 hypothetical protein compare
Psest_0313 -2.1 -4.1 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3307 -2.1 -7.8 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3306 -2.0 -6.2 conserved hypothetical integral membrane protein compare
Psest_3962 -2.0 -2.7 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_0325 -2.0 -11.3 Putative threonine efflux protein compare
Psest_1947 -2.0 -2.9 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_1509 -1.9 -6.7 quinolinate synthetase complex, A subunit compare
Psest_2945 -1.9 -2.7 septum site-determining protein MinC compare
Psest_3305 -1.9 -8.3 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_2946 -1.8 -6.2 septum site-determining protein MinD compare
Psest_0155 -1.8 -6.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3649 -1.8 -8.0 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_4219 -1.8 -2.8 DNA polymerase I compare
Psest_0411 -1.7 -7.0 biotin synthetase compare
Psest_0279 -1.6 -5.0 methionine biosynthesis protein MetW compare
Psest_0212 -1.6 -1.5 exodeoxyribonuclease V, gamma subunit compare
Psest_1417 -1.6 -1.6 hypothetical protein compare
Psest_1999 -1.6 -2.5 pseudouridine synthase compare
Psest_0737 -1.6 -0.9 Cu(I)-responsive transcriptional regulator compare
Psest_2334 -1.6 -12.1 Uncharacterized protein conserved in bacteria compare
Psest_0845 -1.5 -1.1 hypothetical protein compare
Psest_1295 -1.5 -6.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3767 -1.5 -4.2 tyrosine recombinase XerC compare
Psest_0955 -1.5 -4.0 D,L-lactate:H+ symporter (from data) compare
Psest_3864 -1.5 -9.0 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0191 -1.4 -1.1 PAS domain S-box compare
Psest_2585 -1.4 -1.4 pseudouridylate synthase I compare
Psest_0280 -1.4 -7.9 homoserine O-acetyltransferase compare
Psest_3659 -1.4 -2.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_0489 -1.4 -3.0 phosphoserine phosphatase SerB compare
Psest_1204 -1.4 -2.7 Transcriptional regulators compare
Psest_3721 -1.4 -5.6 Malic enzyme compare
Psest_0170 -1.4 -5.1 5,10-methenyltetrahydrofolate synthetase compare
Psest_1306 -1.3 -1.5 hypothetical protein compare
Psest_0508 -1.3 -4.8 gamma-glutamyl phosphate reductase compare
Psest_3697 -1.2 -1.4 Outer membrane lipoprotein carrier protein LolA. compare
Psest_4100 -1.2 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_3910 -1.2 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_3458 -1.2 -1.1 hypothetical protein compare
Psest_3084 -1.2 -2.0 methyltransferase, putative compare
Psest_1496 -1.2 -2.2 Holliday junction DNA helicase, RuvA subunit compare
Psest_3373 -1.2 -4.6 Tfp pilus assembly protein PilX compare
Psest_3943 -1.1 -2.4 Phosphoribosyl-AMP cyclohydrolase compare
Psest_2809 -1.1 -3.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_2405 -1.1 -2.0 NAD-dependent protein deacetylases, SIR2 family compare
Psest_0691 -1.1 -7.5 ribonuclease R compare
Psest_3496 -1.1 -1.2 Predicted metal-binding protein compare
Psest_3784 -1.1 -1.7 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_3954 -1.1 -1.9 Small protein A (tmRNA-binding) compare
Psest_0673 -1.1 -3.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_0164 -1.0 -1.0 Glutaredoxin, GrxC family compare
Psest_3902 -1.0 -2.3 hypothetical protein compare
Psest_1642 -1.0 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_2332 -1.0 -6.4 Predicted acetyltransferase compare
Psest_3536 -1.0 -1.2 hypothetical protein compare
Psest_2629 -1.0 -1.9 Flp pilus assembly protein, pilin Flp compare
Psest_0207 -1.0 -1.8 hypothetical protein compare
Psest_3045 -1.0 -2.8 Cold shock proteins compare
Psest_4049 -1.0 -1.4 hypothetical protein compare
Psest_0609 -1.0 -1.6 hypothetical protein compare
Psest_3142 -1.0 -5.9 Uncharacterized protein conserved in bacteria compare
Psest_4054 -1.0 -2.1 alkanesulfonate monooxygenase, FMNH(2)-dependent compare
Psest_0292 -1.0 -2.3 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_3374 -1.0 -6.3 Tfp pilus assembly protein, tip-associated adhesin PilY1 compare
Psest_1293 -1.0 -1.2 VanZ like family. compare
Psest_2944 -1.0 -1.8 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_1161 -0.9 -2.1 E3 Ubiquitin ligase. compare
Psest_3384 -0.9 -5.3 glutamate 5-kinase compare
Psest_0506 -0.9 -2.5 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Psest_0326 -0.9 -4.4 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0083 -0.9 -1.4 Uncharacterized conserved protein compare
Psest_3371 -0.9 -4.5 type IV pilus modification protein PilV compare
Psest_2447 -0.9 -1.1 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4191 -0.9 -1.2 Transcriptional regulator compare
Psest_3123 -0.9 -1.6 dihydroorotase, homodimeric type compare
Psest_4146 -0.9 -2.7 Flagellar basal-body P-ring protein compare
Psest_3080 -0.9 -1.6 AraC-type DNA-binding domain-containing proteins compare
Psest_0226 -0.9 -1.5 Domain of unknown function (DUF3482)./GTPase of unknown function. compare
Psest_3772 -0.9 -2.4 ammonium transporter compare
Psest_1843 -0.8 -2.5 Uncharacterized Fe-S protein compare
Psest_4241 -0.8 -2.0 hypothetical protein compare
Psest_0193 -0.8 -0.9 conserved hypothetical protein compare
Psest_3502 -0.8 -1.7 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family compare
Psest_2626 -0.8 -1.6 Flp pilus assembly protein CpaB compare
Psest_0956 -0.8 -5.8 Transcriptional regulators compare
Psest_2218 -0.8 -2.0 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_4086 -0.8 -4.7 Transcriptional regulator compare
Psest_3908 -0.8 -0.8 Cytochrome c553 compare
Psest_1424 -0.8 -1.3 Lipoate-protein ligase A compare
Psest_0724 -0.8 -1.8 Deoxyinosine 3'endonuclease (endonuclease V) compare
Psest_0675 -0.8 -2.3 Predicted periplasmic lipoprotein compare
Psest_0442 -0.8 -3.4 ATPases of the AAA+ class compare
Psest_3853 -0.8 -1.4 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_0357 -0.8 -1.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2935 -0.8 -1.6 hypothetical protein compare
Psest_4078 -0.8 -1.9 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D compare
Psest_3050 -0.8 -2.6 tRNA_Gly_CCC compare
Psest_4271 -0.8 -2.4 Predicted proline hydroxylase compare
Psest_2308 -0.8 -0.8 Predicted Fe-S protein compare
Psest_2613 -0.8 -1.1 hypothetical protein compare
Psest_3372 -0.8 -4.2 Tfp pilus assembly protein PilW compare
Psest_3670 -0.8 -5.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_1632 -0.8 -1.7 Predicted permeases compare
Psest_2407 -0.8 -1.9 nitrite reductase [NAD(P)H], small subunit compare
Psest_1691 -0.8 -1.8 aminodeoxychorismate lyase compare
Psest_2907 -0.7 -1.3 Protein of unknown function (DUF3618). compare
Psest_0013 -0.7 -3.7 Lauroyl/myristoyl acyltransferase compare
Psest_3455 -0.7 -1.1 Dihaem cytochrome c. compare
Psest_0837 -0.7 -1.7 Putative lipid carrier protein compare
Psest_2088 -0.7 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_3482 -0.7 -1.9 Parvulin-like peptidyl-prolyl isomerase compare
Psest_0095 -0.7 -1.2 phosphonate C-P lyase system protein PhnH compare
Psest_1322 -0.7 -1.2 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_1695 -0.7 -2.2 Tfp pilus assembly protein PilZ compare
Psest_1525 -0.7 -2.9 Uncharacterized protein conserved in bacteria compare
Psest_1647 -0.7 -1.9 Lhr-like helicases compare
Psest_4044 -0.7 -3.0 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3464 -0.7 -4.2 Signal transduction histidine kinase conserved
Psest_3151 -0.7 -2.5 hypothetical protein compare
Psest_1160 -0.7 -2.0 Uncharacterized conserved protein compare
Psest_2621 -0.7 -1.7 TadE-like protein. compare
Psest_3069 -0.7 -2.2 3-oxoadipate enol-lactonase compare
Psest_1651 -0.7 -2.4 Superfamily II DNA/RNA helicases, SNF2 family compare
Psest_0872 -0.7 -0.9 Helix-turn-helix. compare
Psest_2714 -0.7 -1.3 7-cyano-7-deazaguanine reductase compare
Psest_0853 -0.7 -1.6 6-phosphogluconolactonase compare
Psest_2271 -0.7 -2.2 coenzyme PQQ biosynthesis protein PqqD compare
Psest_0476 -0.7 -4.0 type I secretion outer membrane protein, TolC family compare
Psest_1665 -0.7 -2.8 hypothetical protein compare
Psest_2580 -0.7 -2.5 Uncharacterized membrane protein, required for colicin V production compare
Psest_0515 -0.7 -2.5 rare lipoprotein A compare
Psest_3777 -0.7 -1.6 diguanylate cyclase (GGDEF) domain compare
Psest_3421 -0.7 -2.4 hypothetical protein compare
Psest_0098 -0.7 -2.2 phosphonate ABC transporter, permease protein PhnE compare
Psest_4237 -0.7 -3.2 succinate-semialdehyde dehydrogenase compare
Psest_0650 -0.7 -1.7 RNA polymerase sigma factor, sigma-70 family compare
Psest_1860 -0.6 -0.8 Uncharacterized conserved protein compare
Psest_2594 -0.6 -1.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2612 -0.6 -2.2 hypothetical protein compare
Psest_0571 -0.6 -2.5 Transcriptional regulators compare
Psest_1873 -0.6 -1.5 Predicted permease, DMT superfamily compare
Psest_2775 -0.6 -2.4 Glycerol-3-phosphate dehydrogenase compare
Psest_0412 -0.6 -4.2 8-amino-7-oxononanoate synthase compare
Psest_1997 -0.6 -1.5 6-phosphogluconolactonase compare
Psest_2037 -0.6 -2.6 uroporphyrin-III C-methyltransferase compare
Psest_2923 -0.6 -1.4 hypothetical protein compare
Psest_1154 -0.6 -3.5 RND family efflux transporter, MFP subunit compare
Psest_1325 -0.6 -2.0 Molecular chaperone compare
Psest_4276 -0.6 -1.6 hypothetical protein compare
Psest_1905 -0.6 -1.4 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_3270 -0.6 -1.2 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_4199 -0.6 -2.0 general secretion pathway protein H compare
Psest_2757 -0.6 -0.8 hypothetical protein compare
Psest_1070 -0.6 -1.4 Predicted membrane protein compare
Psest_2330 -0.6 -4.5 2-dehydropantoate 2-reductase compare
Psest_2976 -0.6 -1.4 hypothetical protein compare
Psest_1872 -0.6 -2.1 selT/selW/selH selenoprotein domain compare
Psest_1372 -0.6 -1.9 Methyl-accepting chemotaxis protein compare
Psest_1567 -0.6 -2.3 Transcriptional regulator compare
Psest_0733 -0.6 -3.0 Cation/multidrug efflux pump compare
Psest_2025 -0.6 -0.9 cold shock domain protein CspD compare
Psest_1920 -0.6 -0.7 Uncharacterized protein conserved in bacteria compare
Psest_2233 -0.6 -2.5 Methyl-accepting chemotaxis protein compare
Psest_3938 -0.6 -1.2 Uncharacterized protein conserved in bacteria compare


Specific Phenotypes

For 5 genes in this experiment

For stress Doxycycline hyclate in Pseudomonas stutzeri RCH2

For stress Doxycycline hyclate across organisms