Experiment set7H20 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 defined media with Neomycin trisulfate salt hydrate 0.0008 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_0152 -5.2 -7.1 Imidazoleglycerol-phosphate dehydratase compare
Psest_2590 -5.2 -1.4 3-isopropylmalate dehydratase, small subunit compare
Psest_0155 -5.0 -5.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_3648 -5.0 -5.9 anthranilate phosphoribosyltransferase compare
Psest_3866 -4.6 -17.2 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0153 -4.5 -14.3 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3298 -4.5 -10.9 histidinol dehydrogenase compare
Psest_3647 -4.4 -7.9 Indole-3-glycerol phosphate synthase compare
Psest_3650 -4.4 -12.3 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3944 -4.4 -2.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3299 -4.3 -16.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2584 -4.3 -6.9 Phosphoribosylanthranilate isomerase compare
Psest_0325 -4.3 -16.4 Putative threonine efflux protein compare
Psest_0279 -4.3 -7.2 methionine biosynthesis protein MetW compare
Psest_2578 -4.1 -15.1 O-succinylhomoserine sulfhydrylase compare
Psest_0687 -4.1 -8.3 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3384 -4.1 -10.2 glutamate 5-kinase compare
Psest_0266 -4.0 -9.2 thiamine biosynthesis protein ThiS compare
Psest_3864 -3.9 -14.6 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_1295 -3.9 -9.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2591 -3.9 -3.6 3-isopropylmalate dehydratase, large subunit compare
Psest_3910 -3.9 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_2855 -3.7 -2.3 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1037 -3.7 -3.1 acetolactate synthase, small subunit compare
Psest_3159 -3.7 -9.6 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0062 -3.6 -11.6 tryptophan synthase, alpha subunit compare
Psest_0740 -3.6 -1.8 Transcriptional regulator compare
Psest_1473 -3.6 -10.6 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0514 -3.6 -9.2 lytic murein transglycosylase B compare
Psest_0508 -3.5 -8.7 gamma-glutamyl phosphate reductase compare
Psest_0267 -3.5 -14.2 Uncharacterized enzyme of thiazole biosynthesis compare
Psest_1452 -3.4 -9.3 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_1115 -3.4 -3.3 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_3810 -3.4 -3.3 orotate phosphoribosyltransferase compare
Psest_0280 -3.4 -12.1 homoserine O-acetyltransferase compare
Psest_2579 -3.4 -9.6 amidophosphoribosyltransferase compare
Psest_3100 -3.4 -8.9 RNA polymerase sigma factor RpoE compare
Psest_1509 -3.3 -12.0 quinolinate synthetase complex, A subunit compare
Psest_1013 -3.2 -4.3 phosphoribosylamine--glycine ligase compare
Psest_0063 -3.2 -7.9 tryptophan synthase, beta subunit compare
Psest_2589 -3.2 -11.4 3-isopropylmalate dehydrogenase compare
Psest_1505 -3.2 -2.5 Organic radical activating enzymes compare
Psest_0013 -3.1 -8.5 Lauroyl/myristoyl acyltransferase compare
Psest_2944 -3.1 -2.1 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_0477 -3.0 -13.9 thiamine biosynthesis protein ThiC compare
Psest_3322 -2.9 -18.4 TIGR02099 family protein compare
Psest_0718 -2.9 -4.3 nicotinate-nucleotide pyrophosphorylase compare
Psest_3297 -2.9 -12.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_1474 -2.8 -6.2 phosphoribosylaminoimidazole synthetase compare
Psest_3721 -2.8 -8.9 Malic enzyme compare
Psest_3226 -2.8 -1.2 Predicted membrane protein compare
Psest_1804 -2.8 -3.3 Superfamily II DNA and RNA helicases compare
Psest_3123 -2.8 -5.4 dihydroorotase, homodimeric type compare
Psest_3031 -2.7 -1.0 hypothetical protein compare
Psest_1686 -2.7 -5.8 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0313 -2.7 -2.6 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0489 -2.7 -4.0 phosphoserine phosphatase SerB compare
Psest_3649 -2.7 -10.1 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_2786 -2.6 -1.3 Domain of unknown function (DUF3597). compare
Psest_1504 -2.6 -4.3 tol-pal system protein YbgF compare
Psest_2850 -2.6 -1.6 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_0326 -2.6 -8.5 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_3129 -2.6 -1.8 tyrosine recombinase XerD compare
Psest_3316 -2.6 -8.0 Predicted P-loop-containing kinase compare
Psest_0415 -2.6 -5.7 dethiobiotin synthase compare
Psest_3296 -2.6 -3.0 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_2329 -2.5 -14.6 Transcriptional regulator compare
Psest_0970 -2.5 -3.9 hypothetical protein compare
Psest_2946 -2.5 -6.6 septum site-determining protein MinD compare
Psest_0536 -2.5 -3.8 thiamine-phosphate pyrophosphorylase compare
Psest_2892 -2.5 -3.1 Transcriptional regulator compare
Psest_1511 -2.4 -4.1 Predicted redox protein, regulator of disulfide bond formation compare
Psest_0521 -2.4 -10.1 lytic murein transglycosylase compare
Psest_3693 -2.4 -0.8 Glycosyltransferases involved in cell wall biogenesis compare
Psest_0165 -2.4 -4.1 protein-export chaperone SecB compare
Psest_1772 -2.4 -5.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1947 -2.4 -1.6 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0953 -2.4 -10.1 iron-sulfur cluster-binding protein compare
Psest_2232 -2.3 -13.3 UTP-glucose-1-phosphate uridylyltransferase compare
Psest_4049 -2.3 -1.4 hypothetical protein compare
Psest_3128 -2.3 -4.3 Protein-disulfide isomerase compare
Psest_1012 -2.3 -6.8 Signal transduction histidine kinase compare
Psest_2538 -2.3 -1.8 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_0417 -2.3 -4.0 Acyl-CoA dehydrogenases compare
Psest_0954 -2.2 -8.5 Fe-S oxidoreductase compare
Psest_0133 -2.2 -1.4 type VI secretion protein, VC_A0107 family compare
Psest_4128 -2.2 -2.0 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3862 -2.2 -10.5 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0367 -2.2 -1.6 Predicted branched-chain amino acid permease (azaleucine resistance) compare
Psest_0725 -2.1 -2.2 Negative regulator of beta-lactamase expression compare
Psest_2110 -2.1 -3.2 hypothetical protein compare
Psest_0515 -2.1 -4.3 rare lipoprotein A compare
Psest_3943 -2.0 -3.5 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0259 -2.0 -1.7 cell division ATP-binding protein FtsE compare
Psest_0411 -2.0 -10.5 biotin synthetase compare
Psest_2520 -2.0 -1.5 Predicted SAM-dependent methyltransferase compare
Psest_1805 -2.0 -1.6 integration host factor, beta subunit compare
Psest_2988 -2.0 -6.8 aspartate kinase, monofunctional class compare
Psest_3767 -2.0 -5.1 tyrosine recombinase XerC compare
Psest_2864 -1.9 -4.2 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2136 -1.9 -7.3 Predicted homoserine dehydrogenase compare
Psest_4276 -1.9 -3.6 hypothetical protein compare
Psest_4170 -1.9 -1.6 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_0993 -1.9 -7.8 Glucose-6-phosphate isomerase compare
Psest_4099 -1.8 -10.6 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component compare
Psest_3664 -1.8 -1.2 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_2724 -1.7 -2.8 hypothetical protein compare
Psest_3092 -1.7 -2.0 ribonuclease III, bacterial compare
Psest_2316 -1.7 -8.9 phosphoenolpyruvate synthase compare
Psest_3301 -1.7 -2.4 Predicted transcriptional regulator, BolA superfamily compare
Psest_1840 -1.7 -10.4 Undecaprenyl-phosphate glucose phosphotransferase compare
Psest_0191 -1.7 -0.8 PAS domain S-box compare
Psest_1870 -1.7 -1.1 Transcriptional regulators compare
Psest_2001 -1.7 -1.9 2-phosphoglycolate phosphatase, prokaryotic compare
Psest_1692 -1.7 -6.7 conserved hypothetical protein, YceG family compare
Psest_0952 -1.7 -2.7 Uncharacterized conserved protein compare
Psest_0414 -1.6 -3.4 biotin biosynthesis protein BioC compare
Psest_0498 -1.6 -1.3 ribosome small subunit-dependent GTPase A compare
Psest_4323 -1.6 -8.6 Predicted acyltransferases compare
Psest_3045 -1.6 -1.9 Cold shock proteins compare
Psest_1496 -1.5 -0.9 Holliday junction DNA helicase, RuvA subunit compare
Psest_0969 -1.5 -2.2 transcription elongation factor GreA compare
Psest_0413 -1.5 -4.4 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2719 -1.5 -4.2 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_1860 -1.5 -2.4 Uncharacterized conserved protein compare
Psest_4086 -1.5 -7.2 Transcriptional regulator compare
Psest_4084 -1.5 -10.3 oxaloacetate decarboxylase alpha subunit compare
Psest_3146 -1.4 -1.9 hypothetical protein compare
Psest_0537 -1.4 -1.2 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_2643 -1.4 -1.0 Beta-glucosidase-related glycosidases compare
Psest_1725 -1.4 -6.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3853 -1.4 -2.3 ABC-type branched-chain amino acid transport systems, ATPase component compare
Psest_4278 -1.4 -3.2 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
Psest_1144 -1.4 -1.0 AmpG-related permease compare
Psest_0306 -1.4 -9.3 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_0154 -1.4 -3.8 Uncharacterized conserved protein compare
Psest_4219 -1.4 -2.0 DNA polymerase I compare
Psest_4152 -1.4 -3.9 flagellar basal-body rod protein FlgC compare
Psest_1421 -1.4 -2.2 Glutathione S-transferase compare
Psest_1031 -1.3 -5.2 Uncharacterized protein conserved in bacteria compare
Psest_4363 -1.3 -5.2 ATPases involved in chromosome partitioning compare
Psest_2714 -1.3 -1.8 7-cyano-7-deazaguanine reductase compare
Psest_0016 -1.3 -2.5 ectoine/hydroxyectoine ABC transporter, ATP-binding protein compare
Psest_3212 -1.3 -2.5 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_3148 -1.3 -1.4 hypothetical protein compare
Psest_3047 -1.3 -1.0 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_0732 -1.3 -1.8 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_3908 -1.3 -0.7 Cytochrome c553 compare
Psest_1704 -1.3 -2.0 Dehydrogenases (flavoproteins) compare
Psest_2565 -1.3 -1.7 Transcriptional regulator compare
Psest_0161 -1.3 -2.0 Membrane-bound metallopeptidase compare
Psest_4191 -1.3 -1.2 Transcriptional regulator compare
Psest_3463 -1.3 -4.6 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_4151 -1.3 -2.1 Flagellar hook capping protein compare
Psest_4085 -1.3 -9.2 Biotin carboxylase compare
Psest_2150 -1.3 -1.1 DNA polymerase LigD, polymerase domain compare
Psest_3064 -1.3 -2.2 hypothetical protein compare
Psest_1217 -1.3 -5.5 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein compare
Psest_1176 -1.3 -2.5 Urea transporter compare
Psest_3546 -1.3 -0.7 Phosphatidylglycerophosphatase A and related proteins compare
Psest_1204 -1.3 -1.9 Transcriptional regulators compare
Psest_0717 -1.2 -7.6 Protein of unknown function (DUF1631). compare
Psest_3218 -1.2 -6.5 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1471 -1.2 -3.8 Predicted membrane protein compare
Psest_2088 -1.2 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_3236 -1.2 -2.9 hypothetical protein compare
Psest_0693 -1.2 -9.2 His Kinase A (phosphoacceptor) domain./PAS fold./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Psest_1277 -1.2 -6.9 2-isopropylmalate synthase, yeast type compare
Psest_1516 -1.2 -2.0 Uncharacterized lipoprotein compare
Psest_0558 -1.2 -0.5 urease, beta subunit compare
Psest_1159 -1.2 -5.1 Uncharacterized iron-regulated protein compare
Psest_3372 -1.2 -4.3 Tfp pilus assembly protein PilW compare
Psest_3191 -1.2 -1.9 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_1954 -1.2 -3.2 hypothetical protein compare
Psest_1950 -1.2 -7.5 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family compare
Psest_3399 -1.2 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_0770 -1.2 -2.3 alkylphosphonate utilization operon protein PhnA compare
Psest_1132 -1.2 -2.7 mutator mutT protein compare
Psest_3142 -1.2 -6.0 Uncharacterized protein conserved in bacteria compare
Psest_0442 -1.2 -3.8 ATPases of the AAA+ class compare
Psest_2037 -1.2 -3.8 uroporphyrin-III C-methyltransferase compare
Psest_1532 -1.1 -2.5 DNA recombination-dependent growth factor C compare
Psest_2454 -1.1 -1.4 Rhodanese-related sulfurtransferase compare
Psest_0412 -1.1 -5.2 8-amino-7-oxononanoate synthase compare
Psest_1965 -1.1 -2.9 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain compare
Psest_3756 -1.1 -1.9 hypothetical protein compare
Psest_3190 -1.1 -3.4 pyruvate kinase compare
Psest_3323 -1.1 -3.5 ribonuclease, Rne/Rng family compare
Psest_2333 -1.1 -0.9 Protein of unknown function (DUF3359). compare
Psest_3317 -1.1 -1.9 Phosphotransferase System HPr (HPr) Family compare
Psest_1283 -1.1 -2.5 Membrane proteins related to metalloendopeptidases compare
Psest_3890 -1.1 -0.6 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_0348 -1.1 -3.1 hypothetical protein compare
Psest_1595 -1.1 -0.9 Copper chaperone compare
Psest_3555 -1.1 -2.0 Predicted methyltransferase compare
Psest_0533 -1.1 -3.5 Sel1 repeat. compare
Psest_2379 -1.1 -4.8 PAS domain S-box compare
Psest_2605 -1.1 -1.4 transcriptional activator RfaH compare
Psest_0218 -1.1 -2.2 Acyl-CoA hydrolase compare
Psest_1323 -1.1 -2.1 Hydroxypyruvate isomerase compare


Specific Phenotypes

For 7 genes in this experiment

For stress Neomycin trisulfate salt hydrate in Pseudomonas stutzeri RCH2

For stress Neomycin trisulfate salt hydrate across organisms