Experiment set7H19 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 defined media with Neomycin trisulfate salt hydrate 0.0002 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_2584 -5.7 -4.0 Phosphoribosylanthranilate isomerase compare
Psest_0153 -5.5 -9.3 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0279 -5.3 -6.3 methionine biosynthesis protein MetW compare
Psest_2591 -5.2 -3.6 3-isopropylmalate dehydratase, large subunit compare
Psest_3650 -5.2 -7.9 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2578 -5.0 -12.6 O-succinylhomoserine sulfhydrylase compare
Psest_3648 -4.9 -5.9 anthranilate phosphoribosyltransferase compare
Psest_3226 -4.9 -2.4 Predicted membrane protein compare
Psest_3866 -4.9 -14.1 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3384 -4.9 -7.5 glutamate 5-kinase compare
Psest_3298 -4.9 -8.7 histidinol dehydrogenase compare
Psest_3299 -4.8 -10.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3647 -4.8 -6.6 Indole-3-glycerol phosphate synthase compare
Psest_0152 -4.8 -6.5 Imidazoleglycerol-phosphate dehydratase compare
Psest_3864 -4.8 -12.7 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_2579 -4.8 -6.5 amidophosphoribosyltransferase compare
Psest_1473 -4.7 -8.5 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0508 -4.6 -8.3 gamma-glutamyl phosphate reductase compare
Psest_0953 -4.5 -11.4 iron-sulfur cluster-binding protein compare
Psest_1295 -4.5 -6.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0155 -4.4 -5.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0062 -4.3 -8.8 tryptophan synthase, alpha subunit compare
Psest_3944 -4.3 -3.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_1037 -4.3 -4.2 acetolactate synthase, small subunit compare
Psest_0326 -4.2 -15.9 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_2589 -4.2 -13.9 3-isopropylmalate dehydrogenase compare
Psest_3159 -4.2 -8.9 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3649 -4.2 -8.4 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1509 -4.1 -12.3 quinolinate synthetase complex, A subunit compare
Psest_0280 -4.0 -14.1 homoserine O-acetyltransferase compare
Psest_1452 -3.9 -7.5 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_0498 -3.9 -2.7 ribosome small subunit-dependent GTPase A compare
Psest_0954 -3.9 -9.8 Fe-S oxidoreductase compare
Psest_1474 -3.8 -2.6 phosphoribosylaminoimidazole synthetase compare
Psest_0952 -3.8 -5.1 Uncharacterized conserved protein compare
Psest_0687 -3.7 -9.4 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3810 -3.5 -2.4 orotate phosphoribosyltransferase compare
Psest_0489 -3.5 -2.4 phosphoserine phosphatase SerB compare
Psest_0718 -3.5 -4.8 nicotinate-nucleotide pyrophosphorylase compare
Psest_0063 -3.5 -7.4 tryptophan synthase, beta subunit compare
Psest_0325 -3.4 -13.1 Putative threonine efflux protein compare
Psest_3123 -3.4 -5.5 dihydroorotase, homodimeric type compare
Psest_4085 -3.3 -16.3 Biotin carboxylase compare
Psest_4084 -3.3 -16.0 oxaloacetate decarboxylase alpha subunit compare
Psest_0411 -3.2 -11.4 biotin synthetase compare
Psest_1013 -3.1 -4.7 phosphoribosylamine--glycine ligase compare
Psest_1772 -3.1 -6.2 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3818 -3.1 -7.0 endoribonuclease L-PSP, putative compare
Psest_2590 -3.0 -2.5 3-isopropylmalate dehydratase, small subunit compare
Psest_3297 -3.0 -11.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_1947 -2.8 -1.9 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0413 -2.7 -7.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_0313 -2.7 -2.6 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3943 -2.6 -3.1 Phosphoribosyl-AMP cyclohydrolase compare
Psest_4086 -2.6 -11.6 Transcriptional regulator compare
Psest_0306 -2.6 -14.9 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_0414 -2.6 -5.8 biotin biosynthesis protein BioC compare
Psest_3721 -2.5 -7.9 Malic enzyme compare
Psest_2988 -2.4 -8.4 aspartate kinase, monofunctional class compare
Psest_0412 -2.4 -11.4 8-amino-7-oxononanoate synthase compare
Psest_2329 -2.3 -14.9 Transcriptional regulator compare
Psest_3784 -2.3 -2.6 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1686 -2.2 -6.2 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0267 -2.2 -9.8 Uncharacterized enzyme of thiazole biosynthesis compare
Psest_2104 -2.1 -3.9 IscR-regulated protein YhgI compare
Psest_1012 -2.0 -6.1 Signal transduction histidine kinase compare
Psest_2719 -2.0 -4.8 acetylornithine and succinylornithine aminotransferases/succinylornithine transaminase family compare
Psest_0415 -2.0 -4.5 dethiobiotin synthase compare
Psest_2945 -1.9 -2.7 septum site-determining protein MinC compare
Psest_0951 -1.8 -10.1 FAD/FMN-containing dehydrogenases compare
Psest_1031 -1.8 -7.4 Uncharacterized protein conserved in bacteria compare
Psest_3910 -1.8 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_0955 -1.7 -6.3 D,L-lactate:H+ symporter (from data) compare
Psest_1920 -1.7 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0218 -1.6 -2.8 Acyl-CoA hydrolase compare
Psest_1115 -1.6 -3.7 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_2088 -1.6 -2.7 Uncharacterized protein conserved in bacteria compare
Psest_2872 -1.6 -2.6 protein RecA compare
Psest_2316 -1.6 -10.6 phosphoenolpyruvate synthase compare
Psest_0442 -1.6 -5.5 ATPases of the AAA+ class compare
Psest_0266 -1.5 -5.7 thiamine biosynthesis protein ThiS compare
Psest_0477 -1.5 -9.1 thiamine biosynthesis protein ThiC compare
Psest_3013 -1.5 -2.0 cobyrinic acid a,c-diamide synthase compare
Psest_3700 -1.5 -0.7 hypothetical protein compare
Psest_3565 -1.5 -2.1 hypothetical protein compare
Psest_4103 -1.5 -1.6 AraC-type DNA-binding domain-containing proteins compare
Psest_1292 -1.5 -7.1 monothiol glutaredoxin, Grx4 family compare
Psest_3092 -1.4 -2.6 ribonuclease III, bacterial compare
Psest_0842 -1.4 -2.5 anaerobic ribonucleoside-triphosphate reductase activating protein compare
Psest_3496 -1.4 -1.6 Predicted metal-binding protein compare
Psest_1804 -1.4 -3.0 Superfamily II DNA and RNA helicases compare
Psest_3101 -1.3 -9.6 L-aspartate oxidase compare
Psest_2243 -1.3 -1.8 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_0999 -1.3 -3.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_1144 -1.2 -1.4 AmpG-related permease compare
Psest_0536 -1.2 -3.0 thiamine-phosphate pyrophosphorylase compare
Psest_2532 -1.2 -3.4 Uncharacterized protein conserved in bacteria compare
Psest_3762 -1.2 -4.2 iron donor protein CyaY compare
Psest_0511 -1.2 -1.5 rRNA large subunit m3Psi methyltransferase RlmH compare
Psest_3395 -1.2 -1.7 hypothetical protein compare
Psest_1511 -1.1 -4.0 Predicted redox protein, regulator of disulfide bond formation compare
Psest_2946 -1.1 -3.7 septum site-determining protein MinD compare
Psest_3767 -1.1 -3.3 tyrosine recombinase XerC compare
Psest_2864 -1.1 -3.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_1814 -1.1 -8.2 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0193 -1.1 -1.3 conserved hypothetical protein compare
Psest_0170 -1.1 -4.5 5,10-methenyltetrahydrofolate synthetase compare
Psest_3338 -1.1 -1.7 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Psest_1496 -1.1 -1.3 Holliday junction DNA helicase, RuvA subunit compare
Psest_3938 -1.1 -1.9 Uncharacterized protein conserved in bacteria compare
Psest_3458 -1.0 -1.2 hypothetical protein compare
Psest_3178 -1.0 -2.6 formyltetrahydrofolate deformylase compare
Psest_0066 -1.0 -1.1 Protein of unknown function (DUF3060). compare
Psest_2646 -1.0 -2.6 SOS regulatory protein LexA compare
Psest_3351 -1.0 -3.8 peptide chain release factor 3 compare
Psest_1643 -1.0 -1.2 hypothetical protein compare
Psest_0722 -1.0 -5.2 Predicted ATPase compare
Psest_3998 -1.0 -3.9 glutamate--cysteine ligase compare
Psest_2531 -1.0 -6.8 cytochrome c oxidase accessory protein FixG compare
Psest_4170 -1.0 -1.6 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_3550 -1.0 -1.5 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
Psest_1204 -1.0 -2.1 Transcriptional regulators compare
Psest_2681 -1.0 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_3502 -1.0 -1.9 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family compare
Psest_4145 -1.0 -1.5 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Psest_1428 -0.9 -1.9 Threonine dehydrogenase and related Zn-dependent dehydrogenases compare
Psest_0164 -0.9 -0.9 Glutaredoxin, GrxC family compare
Psest_0510 -0.9 -2.9 iojap-like ribosome-associated protein compare
Psest_3554 -0.9 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_1366 -0.9 -1.3 hypothetical protein compare
Psest_1527 -0.9 -6.6 Na+/proline symporter compare
Psest_1132 -0.9 -3.3 mutator mutT protein compare
Psest_3710 -0.9 -6.2 glutamate synthase small subunit family protein, proteobacterial compare
Psest_3670 -0.9 -5.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
Psest_4044 -0.9 -3.3 type I site-specific deoxyribonuclease, HsdR family compare
Psest_3322 -0.9 -7.5 TIGR02099 family protein compare
Psest_0969 -0.8 -1.9 transcription elongation factor GreA compare
Psest_1640 -0.8 -6.1 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_0537 -0.8 -1.1 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_0346 -0.8 -1.8 small component of pyruvate/D-alanine transporter (TIGR03647) (from data) compare
Psest_2090 -0.8 -2.6 Protein of unknown function (DUF2970). compare
Psest_0778 -0.8 -1.1 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin compare
Psest_3339 -0.8 -4.1 Signal transduction histidine kinase compare
Psest_2648 -0.8 -1.4 hypothetical protein compare
Psest_3543 -0.8 -1.4 hypothetical protein compare
Psest_0154 -0.8 -2.4 Uncharacterized conserved protein compare
Psest_3711 -0.8 -5.6 Glutamate synthase domain 2 compare
Psest_1242 -0.7 -1.7 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_0175 -0.7 -3.4 Xaa-Pro aminopeptidase compare
Psest_1372 -0.7 -3.0 Methyl-accepting chemotaxis protein compare
Psest_0853 -0.7 -1.7 6-phosphogluconolactonase compare
Psest_3927 -0.7 -2.6 thiazole biosynthesis/tRNA modification protein ThiI compare
Psest_2434 -0.7 -2.6 Protein of unknown function (DUF2892). compare
Psest_3840 -0.7 -2.2 D-lactate/glycolate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6; EC 1.1.99.14) (from data) compare
Psest_3697 -0.7 -0.9 Outer membrane lipoprotein carrier protein LolA. compare
Psest_2634 -0.7 -2.3 glycine betaine aldehyde dehydrogenase compare
Psest_2454 -0.7 -1.6 Rhodanese-related sulfurtransferase compare
Psest_3732 -0.7 -4.1 polyphosphate kinase 1 compare
Psest_0030 -0.7 -1.2 Putative NADH-flavin reductase compare
Psest_4396 -0.7 -4.6 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_1679 -0.7 -1.4 ribonuclease, Rne/Rng family compare
Psest_1636 -0.7 -1.9 putative transporter, required for glycine utilization (from data) compare
Psest_0327 -0.7 -3.6 Transcriptional regulator compare
Psest_3573 -0.7 -2.6 dTDP-4-dehydrorhamnose reductase compare
Psest_0086 -0.7 -1.3 hypothetical protein compare
Psest_1626 -0.7 -1.8 Predicted integral membrane protein compare
Psest_3459 -0.7 -1.0 hypothetical protein compare
Psest_2771 -0.7 -1.8 Predicted membrane protein compare
Psest_2331 -0.7 -4.4 phospho-2-dehydro-3-deoxyheptonate aldolase compare
Psest_3664 -0.7 -1.0 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_2218 -0.7 -1.5 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit compare
Psest_4152 -0.7 -2.0 flagellar basal-body rod protein FlgC compare
Psest_0362 -0.7 -2.5 TRAP-type C4-dicarboxylate transport system, small permease component compare
Psest_0719 -0.7 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_2650 -0.7 -1.4 hypothetical protein compare
Psest_3007 -0.7 -1.9 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase compare
Psest_3507 -0.7 -1.7 FOG: EAL domain compare
Psest_2327 -0.6 -3.0 phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein compare
Psest_0516 -0.6 -4.1 D-alanyl-D-alanine carboxypeptidase compare
Psest_0207 -0.6 -1.3 hypothetical protein compare
Psest_0296 -0.6 -3.4 glutathione synthetase, prokaryotic compare
Psest_1913 -0.6 -2.0 Transcriptional regulator compare
Psest_0347 -0.6 -4.8 large component of pyruvate/D-alanine transporter (actP-like) (from data) compare
Psest_2907 -0.6 -1.3 Protein of unknown function (DUF3618). compare
Psest_2483 -0.6 -2.7 Predicted redox protein, regulator of disulfide bond formation compare
Psest_3812 -0.6 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_1431 -0.6 -2.2 hypothetical protein compare
Psest_3505 -0.6 -2.4 Superfamily II DNA and RNA helicases compare
Psest_4123 -0.6 -3.1 Site-specific recombinase XerD compare
Psest_2530 -0.6 -2.6 cytochrome c oxidase, cbb3-type, subunit III compare
Psest_1782 -0.6 -0.7 Predicted transcriptional regulators compare
Psest_2757 -0.6 -1.3 hypothetical protein compare
Psest_1277 -0.6 -4.5 2-isopropylmalate synthase, yeast type compare
Psest_4098 -0.6 -1.2 Superfamily I DNA and RNA helicases compare
Psest_3962 -0.6 -1.3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_3518 -0.6 -0.9 Transcriptional regulators compare
Psest_0759 -0.6 -0.9 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). compare
Psest_2527 -0.6 -3.4 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_3239 -0.6 -2.4 hypothetical protein compare
Psest_4172 -0.6 -2.2 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare


Specific Phenotypes

None in this experiment

For Pseudomonas stutzeri RCH2 in stress experiments

For stress Neomycin trisulfate salt hydrate across organisms