Experiment set7H12 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 defined media with Cephalothin sodium salt 0.08 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_2855 -5.4 -3.6 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_0359 -4.6 -3.2 Transcriptional regulators compare
Psest_3650 -4.4 -11.8 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2584 -4.4 -9.3 Phosphoribosylanthranilate isomerase compare
Psest_0155 -4.2 -7.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0062 -4.0 -9.7 tryptophan synthase, alpha subunit compare
Psest_3322 -3.9 -21.4 TIGR02099 family protein compare
Psest_3648 -3.9 -9.1 anthranilate phosphoribosyltransferase compare
Psest_0508 -3.9 -9.3 gamma-glutamyl phosphate reductase compare
Psest_3384 -3.8 -10.7 glutamate 5-kinase compare
Psest_2579 -3.8 -9.5 amidophosphoribosyltransferase compare
Psest_0326 -3.8 -16.3 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0687 -3.7 -9.6 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3299 -3.7 -13.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2578 -3.7 -14.6 O-succinylhomoserine sulfhydrylase compare
Psest_0152 -3.6 -8.2 Imidazoleglycerol-phosphate dehydratase compare
Psest_3298 -3.6 -12.7 histidinol dehydrogenase compare
Psest_2591 -3.5 -3.7 3-isopropylmalate dehydratase, large subunit compare
Psest_0153 -3.4 -13.0 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_1474 -3.4 -5.2 phosphoribosylaminoimidazole synthetase compare
Psest_3649 -3.3 -9.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_3159 -3.3 -10.9 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_0279 -3.3 -7.3 methionine biosynthesis protein MetW compare
Psest_0280 -3.2 -15.2 homoserine O-acetyltransferase compare
Psest_1837 -3.2 -11.7 Endoglucanase compare
Psest_2590 -3.2 -2.1 3-isopropylmalate dehydratase, small subunit compare
Psest_3866 -3.1 -15.5 threonine ammonia-lyase, biosynthetic, long form compare
Psest_0310 -3.1 -2.1 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
Psest_1452 -3.1 -9.7 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_3864 -3.0 -14.0 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_2589 -3.0 -14.6 3-isopropylmalate dehydrogenase compare
Psest_0063 -2.9 -7.8 tryptophan synthase, beta subunit compare
Psest_3943 -2.9 -2.8 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3810 -2.9 -3.4 orotate phosphoribosyltransferase compare
Psest_4142 -2.8 -1.9 hypothetical protein compare
Psest_1013 -2.8 -5.9 phosphoribosylamine--glycine ligase compare
Psest_0954 -2.8 -11.4 Fe-S oxidoreductase compare
Psest_2901 -2.8 -2.8 hypothetical protein compare
Psest_0259 -2.8 -2.3 cell division ATP-binding protein FtsE compare
Psest_2120 -2.7 -2.6 Transcriptional regulator compare
Psest_1947 -2.6 -1.8 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_0489 -2.6 -4.3 phosphoserine phosphatase SerB compare
Psest_1075 -2.6 -3.9 Predicted transcriptional regulators compare
Psest_3047 -2.6 -2.0 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_0313 -2.6 -3.5 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0498 -2.6 -1.9 ribosome small subunit-dependent GTPase A compare
Psest_3944 -2.6 -3.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0952 -2.6 -4.4 Uncharacterized conserved protein compare
Psest_3013 -2.5 -2.4 cobyrinic acid a,c-diamide synthase compare
Psest_0953 -2.5 -11.9 iron-sulfur cluster-binding protein compare
Psest_1907 -2.4 -1.3 hypothetical protein compare
Psest_3531 -2.4 -1.9 Peptidase propeptide and YPEB domain. compare
Psest_1295 -2.4 -8.1 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3647 -2.4 -5.1 Indole-3-glycerol phosphate synthase compare
Psest_3226 -2.3 -1.8 Predicted membrane protein compare
Psest_0466 -2.3 -6.4 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2945 -2.2 -3.0 septum site-determining protein MinC compare
Psest_3565 -2.2 -2.4 hypothetical protein compare
Psest_0537 -2.2 -2.0 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_0325 -2.1 -11.5 Putative threonine efflux protein compare
Psest_0678 -2.1 -3.3 yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region compare
Psest_1804 -2.1 -3.7 Superfamily II DNA and RNA helicases compare
Psest_1473 -2.1 -6.5 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3296 -2.1 -4.1 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Psest_0013 -2.1 -7.2 Lauroyl/myristoyl acyltransferase compare
Psest_0031 -2.1 -1.1 Uncharacterized conserved protein compare
Psest_1080 -2.0 -7.1 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Psest_1083 -2.0 -7.7 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) compare
Psest_0507 -2.0 -5.4 Uncharacterized membrane-associated protein compare
Psest_1509 -2.0 -8.7 quinolinate synthetase complex, A subunit compare
Psest_2308 -2.0 -1.7 Predicted Fe-S protein compare
Psest_3721 -1.9 -7.5 Malic enzyme compare
Psest_2946 -1.9 -5.9 septum site-determining protein MinD compare
Psest_1510 -1.9 -4.8 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0515 -1.9 -5.3 rare lipoprotein A compare
Psest_2566 -1.9 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_2892 -1.8 -2.9 Transcriptional regulator compare
Psest_3123 -1.8 -2.7 dihydroorotase, homodimeric type compare
Psest_0536 -1.8 -3.6 thiamine-phosphate pyrophosphorylase compare
Psest_3128 -1.8 -4.9 Protein-disulfide isomerase compare
Psest_3449 -1.7 -1.6 DJ-1 family protein compare
Psest_3113 -1.7 -1.9 electron transport complex, RnfABCDGE type, B subunit compare
Psest_4145 -1.7 -2.3 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Psest_2104 -1.7 -3.5 IscR-regulated protein YhgI compare
Psest_1115 -1.7 -2.9 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_0718 -1.7 -3.2 nicotinate-nucleotide pyrophosphorylase compare
Psest_3818 -1.7 -5.4 endoribonuclease L-PSP, putative compare
Psest_0402 -1.7 -2.6 glycosyltransferase, MGT family compare
Psest_1910 -1.7 -2.7 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase compare
Psest_3117 -1.7 -4.0 electron transport complex, RnfABCDGE type, E subunit compare
Psest_1938 -1.7 -5.3 hypothetical protein compare
Psest_3372 -1.7 -7.7 Tfp pilus assembly protein PilW compare
Psest_3373 -1.6 -5.8 Tfp pilus assembly protein PilX compare
Psest_0089 -1.6 -3.1 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN compare
Psest_0212 -1.6 -1.5 exodeoxyribonuclease V, gamma subunit compare
Psest_3700 -1.6 -0.6 hypothetical protein compare
Psest_3546 -1.6 -1.1 Phosphatidylglycerophosphatase A and related proteins compare
Psest_3464 -1.6 -6.9 Signal transduction histidine kinase compare
Psest_3236 -1.6 -3.9 hypothetical protein compare
Psest_0442 -1.6 -4.6 ATPases of the AAA+ class compare
Psest_3185 -1.6 -2.5 MoxR-like ATPases compare
Psest_0277 -1.6 -1.5 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family compare
Psest_1686 -1.6 -3.5 fatty acid/phospholipid synthesis protein PlsX compare
Psest_2944 -1.6 -2.7 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_0311 -1.5 -3.7 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_2646 -1.5 -2.7 SOS regulatory protein LexA compare
Psest_1640 -1.5 -7.4 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_3377 -1.5 -1.5 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_2581 -1.5 -3.3 Uncharacterized protein conserved in bacteria compare
Psest_0032 -1.5 -7.7 D-alanyl-D-alanine carboxypeptidase compare
Psest_4196 -1.5 -2.0 Type II secretory pathway, component PulK compare
Psest_3702 -1.5 -2.4 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase compare
Psest_0189 -1.5 -3.8 Negative regulator of beta-lactamase expression compare
Psest_1814 -1.5 -10.5 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1772 -1.4 -3.7 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0401 -1.4 -0.9 isopentenyl-diphosphate delta-isomerase, type 2 compare
Psest_0655 -1.4 -1.8 Chemotaxis signal transduction protein compare
Psest_0191 -1.4 -1.0 PAS domain S-box compare
Psest_3884 -1.4 -0.7 Signal transduction histidine kinase compare
Psest_1496 -1.4 -1.8 Holliday junction DNA helicase, RuvA subunit compare
Psest_1179 -1.4 -1.7 2-hydroxy-3-oxopropionate reductase compare
Psest_0662 -1.4 -1.7 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_3374 -1.4 -8.1 Tfp pilus assembly protein, tip-associated adhesin PilY1 compare
Psest_0411 -1.4 -7.0 biotin synthetase compare
Psest_3476 -1.4 -1.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3343 -1.4 -4.1 Predicted periplasmic protein compare
Psest_3399 -1.4 -1.4 Uncharacterized protein conserved in bacteria compare
Psest_2621 -1.4 -2.8 TadE-like protein. compare
Psest_0861 -1.4 -3.1 hypothetical protein compare
Psest_4128 -1.4 -1.5 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3664 -1.4 -1.3 Predicted phosphotransferase related to Ser/Thr protein kinases compare
Psest_2358 -1.4 -1.9 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2066 -1.4 -3.4 ABC-type uncharacterized transport system, permease component compare
Psest_3995 -1.4 -2.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1942 -1.4 -5.3 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) compare
Psest_3494 -1.3 -1.5 hypothetical protein compare
Psest_3473 -1.3 -3.4 hypothetical protein compare
Psest_3371 -1.3 -6.4 type IV pilus modification protein PilV compare
Psest_3297 -1.3 -6.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_0514 -1.3 -5.3 lytic murein transglycosylase B compare
Psest_3174 -1.3 -10.5 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_3767 -1.3 -3.4 tyrosine recombinase XerC compare
Psest_3960 -1.3 -1.4 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_0487 -1.3 -2.9 Uncharacterized protein conserved in bacteria compare
Psest_0521 -1.3 -7.5 lytic murein transglycosylase compare
Psest_3749 -1.3 -6.6 Response regulator of the LytR/AlgR family compare
Psest_3860 -1.3 -2.2 Predicted permeases compare
Psest_0969 -1.3 -1.8 transcription elongation factor GreA compare
Psest_4314 -1.3 -2.8 ABC-type metal ion transport system, ATPase component compare
Psest_3092 -1.3 -1.8 ribonuclease III, bacterial compare
Psest_3895 -1.3 -1.8 hypothetical protein compare
Psest_0192 -1.2 -5.3 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_4303 -1.2 -0.9 HEAT repeat. compare
Psest_3905 -1.2 -3.1 formate dehydrogenase, alpha subunit, archaeal-type compare
Psest_2379 -1.2 -5.8 PAS domain S-box compare
Psest_0079 -1.2 -3.3 hypothetical protein compare
Psest_1943 -1.2 -6.3 MoxR-like ATPases compare
Psest_0309 -1.2 -1.3 RND family efflux transporter, MFP subunit compare
Psest_0267 -1.2 -6.6 Uncharacterized enzyme of thiazole biosynthesis compare
Psest_3697 -1.2 -1.1 Outer membrane lipoprotein carrier protein LolA. compare
Psest_1659 -1.2 -2.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit compare
Psest_4085 -1.2 -7.2 Biotin carboxylase compare
Psest_3370 -1.2 -4.0 prepilin-type N-terminal cleavage/methylation domain compare
Psest_0414 -1.2 -3.7 biotin biosynthesis protein BioC compare
Psest_0779 -1.2 -2.5 tyrosine aminotransferase (EC 2.6.1.57) (from data) compare
Psest_1940 -1.2 -2.7 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain compare
Psest_2070 -1.2 -5.5 FOG: LysM repeat conserved
Psest_4084 -1.2 -7.9 oxaloacetate decarboxylase alpha subunit compare
Psest_2907 -1.2 -1.5 Protein of unknown function (DUF3618). compare
Psest_0734 -1.2 -1.8 RND family efflux transporter, MFP subunit compare
Psest_0299 -1.2 -2.4 Chemotaxis signal transduction protein compare
Psest_0298 -1.2 -2.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0266 -1.2 -4.6 thiamine biosynthesis protein ThiS compare
Psest_0751 -1.2 -3.7 Arabinose efflux permease compare
Psest_3936 -1.2 -1.7 ATP-dependent protease HslVU, peptidase subunit compare
Psest_3803 -1.2 -0.8 DNA repair protein radc compare
Psest_1354 -1.2 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_2316 -1.2 -7.9 phosphoenolpyruvate synthase compare
Psest_2288 -1.2 -3.1 trigger factor compare
Psest_0312 -1.2 -3.5 Superfamily II DNA and RNA helicases compare
Psest_2532 -1.1 -3.2 Uncharacterized protein conserved in bacteria compare
Psest_3301 -1.1 -2.9 Predicted transcriptional regulator, BolA superfamily compare
Psest_0292 -1.1 -1.9 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_3100 -1.1 -5.2 RNA polymerase sigma factor RpoE compare
Psest_1144 -1.1 -1.8 AmpG-related permease compare
Psest_1012 -1.1 -3.9 Signal transduction histidine kinase compare
Psest_1122 -1.1 -8.5 putative adhesin (DUF1302) (from data) compare
Psest_1567 -1.1 -3.3 Transcriptional regulator compare
Psest_2538 -1.1 -1.8 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_3823 -1.1 -2.5 hypothetical protein compare
Psest_1527 -1.1 -7.0 Na+/proline symporter compare
Psest_1939 -1.1 -3.4 Tetratricopeptide repeat. compare
Psest_3458 -1.1 -1.2 hypothetical protein compare
Psest_1360 -1.1 -2.7 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Psest_0558 -1.1 -0.7 urease, beta subunit compare
Psest_4276 -1.1 -2.0 hypothetical protein compare
Psest_2390 -1.1 -4.0 hypothetical protein compare
Psest_2285 -1.1 -3.4 ATP-dependent protease La compare
Psest_1217 -1.1 -5.1 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein conserved
Psest_1087 -1.1 -0.6 uncharacterized peroxidase-related enzyme compare


Specific Phenotypes

For 8 genes in this experiment

For stress Cephalothin sodium salt in Pseudomonas stutzeri RCH2

For stress Cephalothin sodium salt across organisms