Experiment set7H10 for Pseudomonas stutzeri RCH2

Compare to:

RCH2 defined media with Vancomycin Hydrochloride Hydrate 0.016 mg/ml

200 most important genes:

  gene name fitness t score description  
Psest_0152 -5.1 -7.0 Imidazoleglycerol-phosphate dehydratase compare
Psest_3226 -4.9 -2.0 Predicted membrane protein compare
Psest_2584 -4.8 -8.0 Phosphoribosylanthranilate isomerase compare
Psest_3322 -4.7 -19.4 TIGR02099 family protein compare
Psest_3650 -4.4 -10.6 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0153 -4.3 -13.4 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3944 -4.3 -2.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_0062 -4.2 -9.3 tryptophan synthase, alpha subunit compare
Psest_3647 -4.0 -7.2 Indole-3-glycerol phosphate synthase compare
Psest_1837 -4.0 -13.0 Endoglucanase compare
Psest_3866 -3.9 -16.7 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3299 -3.9 -13.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3648 -3.9 -8.2 anthranilate phosphoribosyltransferase compare
Psest_2579 -3.8 -8.9 amidophosphoribosyltransferase compare
Psest_0155 -3.8 -7.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0326 -3.7 -16.0 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0013 -3.7 -7.1 Lauroyl/myristoyl acyltransferase compare
Psest_0687 -3.7 -8.9 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2578 -3.7 -14.9 O-succinylhomoserine sulfhydrylase compare
Psest_3298 -3.6 -11.9 histidinol dehydrogenase compare
Psest_3864 -3.6 -14.7 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0063 -3.5 -7.1 tryptophan synthase, beta subunit compare
Psest_1473 -3.5 -9.1 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3384 -3.5 -10.8 glutamate 5-kinase compare
Psest_3810 -3.5 -2.4 orotate phosphoribosyltransferase compare
Psest_0489 -3.4 -2.3 phosphoserine phosphatase SerB compare
Psest_0954 -3.4 -11.5 Fe-S oxidoreductase compare
Psest_0508 -3.3 -8.8 gamma-glutamyl phosphate reductase compare
Psest_0325 -3.3 -15.1 Putative threonine efflux protein compare
Psest_3649 -3.3 -9.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1509 -3.3 -11.7 quinolinate synthetase complex, A subunit compare
Psest_1474 -3.3 -5.0 phosphoribosylaminoimidazole synthetase compare
Psest_2589 -3.2 -11.1 3-isopropylmalate dehydrogenase compare
Psest_2591 -3.2 -4.4 3-isopropylmalate dehydratase, large subunit compare
Psest_0280 -3.2 -14.7 homoserine O-acetyltransferase compare
Psest_1452 -3.2 -9.4 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_3159 -3.2 -11.1 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_1295 -3.2 -8.6 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0279 -3.1 -6.5 methionine biosynthesis protein MetW compare
Psest_3092 -3.1 -3.6 ribonuclease III, bacterial compare
Psest_2088 -3.1 -4.6 Uncharacterized protein conserved in bacteria compare
Psest_3123 -3.1 -5.4 dihydroorotase, homodimeric type compare
Psest_0718 -3.0 -5.3 nicotinate-nucleotide pyrophosphorylase compare
Psest_2946 -3.0 -5.9 septum site-determining protein MinD compare
Psest_2590 -2.9 -2.1 3-isopropylmalate dehydratase, small subunit compare
Psest_1772 -2.9 -6.4 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0952 -2.9 -4.8 Uncharacterized conserved protein compare
Psest_3884 -2.9 -1.2 Signal transduction histidine kinase compare
Psest_1510 -2.8 -5.1 Putative Zn-dependent protease, contains TPR repeats compare
Psest_0193 -2.6 -1.5 conserved hypothetical protein compare
Psest_0953 -2.6 -9.7 iron-sulfur cluster-binding protein compare
Psest_1947 -2.5 -1.7 dihydroorotate dehydrogenase, subfamily 2 compare
Psest_4134 -2.5 -2.4 Uncharacterized protein conserved in bacteria compare
Psest_3047 -2.5 -2.0 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_2945 -2.5 -2.8 septum site-determining protein MinC compare
Psest_0466 -2.4 -6.2 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_2988 -2.4 -7.7 aspartate kinase, monofunctional class compare
Psest_1013 -2.3 -4.6 phosphoribosylamine--glycine ligase compare
Psest_2855 -2.3 -2.1 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Psest_1496 -2.2 -2.9 Holliday junction DNA helicase, RuvA subunit compare
Psest_3496 -2.2 -1.7 Predicted metal-binding protein compare
Psest_0313 -2.2 -3.6 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_3297 -2.1 -8.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_3373 -2.0 -7.1 Tfp pilus assembly protein PilX compare
Psest_0537 -2.0 -1.8 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_3990 -2.0 -7.3 PAP2 superfamily. compare
Psest_0259 -1.9 -2.3 cell division ATP-binding protein FtsE compare
Psest_2066 -1.9 -4.2 ABC-type uncharacterized transport system, permease component compare
Psest_2585 -1.9 -1.8 pseudouridylate synthase I compare
Psest_0298 -1.9 -5.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0507 -1.9 -4.4 Uncharacterized membrane-associated protein compare
Psest_3128 -1.9 -6.0 Protein-disulfide isomerase compare
Psest_3236 -1.9 -4.1 hypothetical protein compare
Psest_3883 -1.9 -5.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0411 -1.8 -8.7 biotin synthetase compare
Psest_3129 -1.8 -2.0 tyrosine recombinase XerD compare
Psest_0673 -1.8 -4.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase compare
Psest_2944 -1.8 -2.6 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
Psest_2991 -1.8 -6.3 hypothetical protein compare
Psest_2070 -1.8 -9.1 FOG: LysM repeat conserved
Psest_3943 -1.7 -3.0 Phosphoribosyl-AMP cyclohydrolase compare
Psest_3372 -1.7 -8.9 Tfp pilus assembly protein PilW compare
Psest_0867 -1.7 -1.2 hypothetical protein compare
Psest_0442 -1.7 -5.0 ATPases of the AAA+ class compare
Psest_3818 -1.7 -6.0 endoribonuclease L-PSP, putative compare
Psest_3371 -1.6 -7.5 type IV pilus modification protein PilV compare
Psest_3464 -1.6 -7.8 Signal transduction histidine kinase compare
Psest_3377 -1.6 -1.6 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Psest_2285 -1.6 -4.3 ATP-dependent protease La compare
Psest_1640 -1.6 -7.6 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_3020 -1.6 -5.6 Cell wall-associated hydrolases (invasion-associated proteins) compare
Psest_3374 -1.6 -9.1 Tfp pilus assembly protein, tip-associated adhesin PilY1 compare
Psest_3455 -1.5 -2.1 Dihaem cytochrome c. compare
Psest_3230 -1.5 -6.5 Uncharacterized conserved protein compare
Psest_3174 -1.4 -11.6 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Psest_3370 -1.4 -6.9 prepilin-type N-terminal cleavage/methylation domain compare
Psest_3894 -1.4 -3.0 Carbon starvation protein, predicted membrane protein compare
Psest_3031 -1.4 -1.1 hypothetical protein compare
Psest_2667 -1.4 -2.4 Uncharacterized protein involved in propionate catabolism compare
Psest_4406 -1.4 -1.3 hypothetical protein compare
Psest_0845 -1.4 -0.9 hypothetical protein compare
Psest_0216 -1.4 -3.1 Predicted permeases compare
Psest_4085 -1.4 -9.8 Biotin carboxylase compare
Psest_1783 -1.4 -3.0 Predicted transporter component compare
Psest_3908 -1.3 -1.1 Cytochrome c553 compare
Psest_4084 -1.3 -9.1 oxaloacetate decarboxylase alpha subunit compare
Psest_4099 -1.3 -8.2 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component conserved
Psest_0498 -1.3 -1.3 ribosome small subunit-dependent GTPase A compare
Psest_4098 -1.3 -2.2 Superfamily I DNA and RNA helicases compare
Psest_1574 -1.3 -2.6 phenazine biosynthesis protein PhzF family compare
Psest_3531 -1.3 -1.0 Peptidase propeptide and YPEB domain. compare
Psest_2566 -1.3 -1.1 Uncharacterized protein conserved in bacteria compare
Psest_2329 -1.3 -9.9 Transcriptional regulator compare
Psest_0515 -1.3 -3.0 rare lipoprotein A compare
Psest_2379 -1.3 -6.7 PAS domain S-box compare
Psest_4184 -1.2 -3.2 hypothetical protein compare
Psest_2646 -1.2 -2.0 SOS regulatory protein LexA compare
Psest_2025 -1.2 -1.4 cold shock domain protein CspD compare
Psest_1012 -1.2 -4.1 Signal transduction histidine kinase compare
Psest_1293 -1.2 -1.6 VanZ like family. compare
Psest_3565 -1.2 -1.5 hypothetical protein compare
Psest_3780 -1.2 -2.4 Transcriptional regulator compare
Psest_0955 -1.2 -3.8 D,L-lactate:H+ symporter (from data) compare
Psest_1115 -1.2 -2.7 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_0212 -1.2 -1.1 exodeoxyribonuclease V, gamma subunit compare
Psest_4145 -1.2 -2.0 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Psest_2358 -1.2 -1.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4287 -1.2 -4.8 Predicted glutamine amidotransferases compare
Psest_0267 -1.1 -6.9 Uncharacterized enzyme of thiazole biosynthesis compare
Psest_1313 -1.1 -1.3 Uncharacterized conserved small protein compare
Psest_3893 -1.1 -2.2 Multisubunit Na+/H+ antiporter, MnhE subunit compare
Psest_4211 -1.1 -2.1 conserverd hypothetical protein compare
Psest_0192 -1.1 -5.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3692 -1.1 -2.1 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases compare
Psest_0300 -1.1 -5.6 Methyl-accepting chemotaxis protein compare
Psest_2648 -1.1 -1.9 hypothetical protein compare
Psest_0266 -1.0 -3.6 thiamine biosynthesis protein ThiS compare
Psest_2850 -1.0 -1.5 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_3180 -1.0 -6.5 Exonuclease I compare
Psest_4170 -1.0 -1.1 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_2899 -1.0 -1.6 hypothetical protein compare
Psest_3850 -1.0 -0.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2312 -1.0 -5.5 Small-conductance mechanosensitive channel compare
Psest_1488 -1.0 -8.4 outer membrane porin, OprD family. compare
Psest_0393 -1.0 -4.0 Methylase of chemotaxis methyl-accepting proteins compare
Psest_0390 -1.0 -1.8 Short-chain dehydrogenases of various substrate specificities compare
Psest_1149 -1.0 -2.4 Protein affecting phage T7 exclusion by the F plasmid compare
Psest_0292 -1.0 -1.6 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_0218 -1.0 -2.1 Acyl-CoA hydrolase compare
Psest_0093 -1.0 -1.4 Uncharacterized enzyme of phosphonate metabolism compare
Psest_4315 -1.0 -1.8 ABC-type metal ion transport system, permease component compare
Psest_0302 -1.0 -8.1 Chemotaxis protein histidine kinase and related kinases compare
Psest_2757 -1.0 -1.4 hypothetical protein compare
Psest_0260 -1.0 -1.8 Cell division protein compare
Psest_1871 -1.0 -5.7 Predicted esterase of the alpha-beta hydrolase superfamily compare
Psest_3721 -1.0 -4.7 Malic enzyme compare
Psest_2243 -1.0 -1.2 glyceraldehyde-3-phosphate dehydrogenase, type I compare
Psest_1122 -1.0 -7.6 putative adhesin (DUF1302) (from data) compare
Psest_4256 -1.0 -1.2 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_1951 -1.0 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0601 -0.9 -2.4 hypothetical protein compare
Psest_2594 -0.9 -2.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2645 -0.9 -4.1 Transcriptional regulator compare
Psest_4195 -0.9 -2.7 general secretion pathway protein L compare
Psest_3745 -0.9 -2.3 Uncharacterized enzyme of heme biosynthesis compare
Psest_1242 -0.9 -1.6 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2764 -0.9 -1.2 hypothetical protein compare
Psest_1479 -0.9 -2.6 NAD(P)H:quinone oxidoreductase, type IV compare
Psest_3395 -0.9 -1.2 hypothetical protein compare
Psest_2380 -0.9 -6.6 Uncharacterized conserved protein compare
Psest_2359 -0.9 -1.8 Predicted permeases compare
Psest_4243 -0.9 -1.0 type VI secretion lipoprotein, VC_A0113 family compare
Psest_1152 -0.9 -3.6 hypothetical protein compare
Psest_1860 -0.9 -2.9 Uncharacterized conserved protein compare
Psest_0334 -0.9 -2.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0094 -0.9 -1.1 Uncharacterized enzyme of phosphonate metabolism compare
Psest_0186 -0.9 -2.3 Protein-disulfide isomerase compare
Psest_0574 -0.9 -3.2 hypothetical protein compare
Psest_4219 -0.9 -1.5 DNA polymerase I compare
Psest_3732 -0.9 -4.3 polyphosphate kinase 1 compare
Psest_0086 -0.9 -2.1 hypothetical protein compare
Psest_2580 -0.9 -2.7 Uncharacterized membrane protein, required for colicin V production compare
Psest_1920 -0.8 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_0514 -0.8 -3.3 lytic murein transglycosylase B compare
Psest_3882 -0.8 -4.6 Opacity protein and related surface antigens compare
Psest_0297 -0.8 -3.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_4213 -0.8 -5.1 hypothetical protein compare
Psest_3809 -0.8 -3.0 hypothetical protein compare
Psest_1814 -0.8 -5.6 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1117 -0.8 -2.3 Lipid A 3-O-deacylase (PagL). compare
Psest_2454 -0.8 -1.8 Rhodanese-related sulfurtransferase compare
Psest_1016 -0.8 -3.6 putative TIM-barrel protein, nifR3 family compare
Psest_2114 -0.8 -3.0 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2632 -0.8 -2.9 ribosomal protein S12 methylthiotransferase RimO compare
Psest_2586 -0.8 -6.9 FimV N-terminal domain compare
Psest_2470 -0.8 -1.5 hypothetical protein compare
Psest_1905 -0.8 -1.5 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Psest_4086 -0.8 -5.3 Transcriptional regulator compare
Psest_1132 -0.8 -3.2 mutator mutT protein compare
Psest_3497 -0.8 -1.7 Predicted metalloprotease compare


Specific Phenotypes

For 14 genes in this experiment

For stress Vancomycin Hydrochloride Hydrate in Pseudomonas stutzeri RCH2

For stress Vancomycin Hydrochloride Hydrate across organisms