Experiment set6S98 for Phocaeicola vulgatus CL09T03C04
diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day8
Group: mouseMedia: + diet=StandardDiet; sample=FecalPellet; inoculation=MixComm
Culturing: Bvulgatus_CL09T03C04_ML5
By: Surya Tripathi on 12/1/24
Specific Phenotypes
For 22 genes in this experiment
For mouse diet=StandardDiet; sample=FecalPellet; inoculation=MixComm across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Pentose and glucuronate interconversions
- Fructose and mannose metabolism
- Galactose metabolism
- Ascorbate and aldarate metabolism
- Nucleotide sugars metabolism
- Glycosaminoglycan degradation
- Glycolysis / Gluconeogenesis
- Ubiquinone and menaquinone biosynthesis
- Purine metabolism
- Pyrimidine metabolism
- Starch and sucrose metabolism
- Other glycan degradation
- Aminosugars metabolism
- Sphingolipid metabolism
- Glycosphingolipid biosynthesis - ganglio series
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| lactose degradation III | 1 | 1 | 1 |
| 4-deoxy-L-threo-hex-4-enopyranuronate degradation | 5 | 4 | 2 |
| xyloglucan degradation II (exoglucanase) | 8 | 5 | 3 |
| L-idonate degradation | 3 | 1 | 1 |
| queuosine biosynthesis I (de novo) | 4 | 3 | 1 |
| 2-deoxy-D-glucose 6-phosphate degradation | 4 | 2 | 1 |
| L-lyxose degradation | 4 | 2 | 1 |
| L-rhamnose degradation I | 5 | 5 | 1 |
| 3,6-anhydro-α-L-galactopyranose degradation | 7 | 4 | 1 |
| ketogluconate metabolism | 8 | 1 | 1 |
| superpathway of fucose and rhamnose degradation | 12 | 9 | 1 |
| superpathway of microbial D-galacturonate and D-glucuronate degradation | 31 | 14 | 2 |
| superpathway of pentose and pentitol degradation | 42 | 11 | 1 |