Experiment set6S708 for Methanococcus maripaludis JJ

Compare to:

McCas-formate low carbon steel planktonic

200 most important genes:

  gene name fitness t score description  
MMJJ_RS04970 -1.9 -2.6 DUF655 domain-containing protein compare
MMJJ_RS01360 -1.8 -2.8 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS06250 -1.7 -2.4 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS00215 -1.6 -2.5 CCA tRNA nucleotidyltransferase compare
MMJJ_RS03840 -1.6 -3.3 DHH family phosphoesterase compare
MMJJ_RS04150 -1.6 -2.5 DUF5379 domain-containing protein compare
MMJJ_RS05650 -1.4 -2.2 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS02045 -1.4 -2.2 molybdenum cofactor guanylyltransferase compare
MMJJ_RS00275 -1.3 -2.2 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS05935 -1.2 -1.9 Era-like GTP-binding protein compare
MMJJ_RS06180 -1.2 -2.5 tryptophan--tRNA ligase compare
MMJJ_RS06750 -1.2 -2.2 homoaconitase large subunit compare
MMJJ_RS09190 -1.2 -1.2 tryptophan synthase subunit beta compare
MMJJ_RS05620 -1.1 -2.9 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS05330 -1.1 -1.7 DNA polymerase II large subunit compare
MMJJ_RS08330 -1.1 -2.3 SufD family Fe-S cluster assembly protein compare
MMJJ_RS06875 -1.0 -2.1 hypothetical protein compare
MMJJ_RS06840 -1.0 -2.4 nickel-dependent hydrogenase large subunit compare
MMJJ_RS06625 -1.0 -1.0 pyruvate synthase subunit PorB compare
MMJJ_RS07000 -1.0 -1.7 TrkH family potassium uptake protein compare
MMJJ_RS01880 -1.0 -2.3 RlmE family RNA methyltransferase compare
MMJJ_RS05720 -0.9 -1.6 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS06110 -0.9 -1.5 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS01355 -0.9 -2.0 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS07655 -0.9 -7.7 hypothetical protein compare
MMJJ_RS03200 -0.9 -1.6 uroporphyrinogen-III synthase compare
MMJJ_RS00450 -0.8 -1.7 DUF126 domain-containing protein compare
MMJJ_RS01200 -0.8 -2.0 PRC-barrel domain-containing protein compare
MMJJ_RS00370 -0.8 -1.1 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS01935 -0.8 -2.3 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS05590 -0.8 -1.5 homoserine dehydrogenase compare
MMJJ_RS06695 -0.8 -1.7 amidohydrolase compare
MMJJ_RS05575 -0.7 -2.5 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS08065 -0.7 -3.4 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS07015 -0.7 -1.7 PFL family protein compare
MMJJ_RS03810 -0.7 -2.4 AIR synthase-related protein compare
MMJJ_RS07035 -0.7 -1.5 glycosyl transferase compare
MMJJ_RS06910 -0.7 -1.6 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS07360 -0.7 -1.4 TIGR00269 family protein compare
MMJJ_RS05710 -0.7 -2.2 single-stranded-DNA-specific exonuclease RecJ compare
MMJJ_RS05950 -0.7 -1.8 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS03670 -0.7 -2.1 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS03005 -0.7 -1.8 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS00600 -0.7 -1.2 hydroxymethylbilane synthase compare
MMJJ_RS06600 -0.6 -1.5 DUF555 domain-containing protein compare
MMJJ_RS06340 -0.6 -1.3 coenzyme-B sulfoethylthiotransferase subunit alpha compare
MMJJ_RS08080 -0.6 -3.5 TIGR00300 family protein compare
MMJJ_RS08535 -0.6 -1.5 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS04200 -0.6 -2.2 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS06390 -0.6 -1.1 NADPH-dependent F420 reductase compare
MMJJ_RS06855 -0.6 -1.1 DUF2104 domain-containing protein compare
MMJJ_RS01750 -0.6 -1.1 ferrous iron transport protein A compare
MMJJ_RS00210 -0.6 -1.0 DUF530 family protein compare
MMJJ_RS00355 -0.6 -1.4 ribonuclease P protein component 4 compare
MMJJ_RS04360 -0.6 -4.5 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS05380 -0.6 -1.1 hypothetical protein compare
MMJJ_RS03760 -0.6 -0.9 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS08190 -0.6 -1.1 hypothetical protein compare
MMJJ_RS05930 -0.6 -0.9 cell division protein SepF compare
MMJJ_RS07190 -0.6 -1.8 RtcB family protein compare
MMJJ_RS07350 -0.6 -1.3 4Fe-4S binding protein compare
MMJJ_RS08055 -0.5 -2.7 methanogenesis marker 14 protein compare
MMJJ_RS04155 -0.5 -2.5 hypothetical protein compare
MMJJ_RS03865 -0.5 -0.8 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS03660 -0.5 -1.4 DUF447 family protein compare
MMJJ_RS04110 -0.5 -2.7 hypothetical protein compare
MMJJ_RS08230 -0.5 -1.4 ribose-5-phosphate isomerase RpiA compare
MMJJ_RS03820 -0.5 -1.5 hydrogenase formation protein HypD compare
MMJJ_RS07725 -0.5 -2.3 DNA primase DnaG compare
MMJJ_RS01755 -0.5 -1.1 ferrous iron transport protein B compare
MMJJ_RS06865 -0.5 -1.4 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS07665 -0.5 -4.7 formate dehydrogenase subunit alpha compare
MMJJ_RS07875 -0.5 -1.3 FAD-dependent oxidoreductase compare
MMJJ_RS07670 -0.5 -4.3 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS06930 -0.5 -1.3 type II methionyl aminopeptidase compare
MMJJ_RS08850 -0.5 -0.9 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS06000 -0.5 -1.9 cation:proton antiporter subunit C compare
MMJJ_RS03580 -0.5 -0.9 TIGR00303 family protein compare
MMJJ_RS03150 -0.5 -1.9 2-phospho-L-lactate transferase compare
MMJJ_RS04685 -0.5 -2.4 carbamoyltransferase HypF compare
MMJJ_RS09035 -0.5 -2.0 OB-fold nucleic acid binding domain-containing protein compare
MMJJ_RS07275 -0.4 -1.2 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS08390 -0.4 -1.6 carboxymuconolactone decarboxylase family protein compare
MMJJ_RS00195 -0.4 -1.4 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS08840 -0.4 -1.6 calcium/sodium antiporter compare
MMJJ_RS01345 -0.4 -1.4 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS06150 -0.4 -1.5 DUF483 domain-containing protein compare
MMJJ_RS07505 -0.4 -0.8 DNA-directed RNA polymerase subunit K compare
MMJJ_RS06380 -0.4 -1.4 signal recognition particle protein Srp54 compare
MMJJ_RS00560 -0.4 -1.2 homoisocitrate dehydrogenase compare
MMJJ_RS05225 -0.4 -0.8 Gar1/Naf1 family protein compare
MMJJ_RS00180 -0.4 -2.6 DNA topoisomerase I compare
MMJJ_RS02040 -0.4 -1.0 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS04565 -0.4 -1.0 sirohydrochlorin nickelochelatase compare
MMJJ_RS07715 -0.4 -1.0 UbiD family decarboxylase compare
MMJJ_RS08005 -0.4 -3.6 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS05490 -0.4 -0.9 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS04485 -0.4 -2.5 riboflavin synthase compare
MMJJ_RS07165 -0.4 -3.5 chromosome segregation protein SMC compare
MMJJ_RS06485 -0.4 -0.9 phosphoglycerate kinase compare
MMJJ_RS00475 -0.4 -0.9 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS03075 -0.4 -3.2 sodium-dependent transporter compare
MMJJ_RS07650 -0.4 -3.3 formate/nitrite transporter family protein compare
MMJJ_RS03095 -0.4 -0.9 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS07810 -0.4 -3.1 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMJJ_RS07705 -0.4 -0.9 GTP-binding protein EngB compare
MMJJ_RS03055 -0.4 -1.0 hypothetical protein compare
MMJJ_RS06510 -0.4 -0.6 LL-diaminopimelate aminotransferase compare
MMJJ_RS06705 -0.4 -1.7 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS05645 -0.4 -1.5 4Fe-4S binding protein compare
MMJJ_RS08865 -0.3 -2.7 class IV adenylate cyclase compare
MMJJ_RS06565 -0.3 -2.4 segregation/condensation protein A compare
MMJJ_RS06010 -0.3 -1.9 hypothetical protein compare
MMJJ_RS06905 -0.3 -0.7 hypothetical protein compare
MMJJ_RS08095 -0.3 -1.2 cobyric acid synthase CobQ compare
MMJJ_RS05540 -0.3 -3.0 LysR family transcriptional regulator compare
MMJJ_RS07995 -0.3 -1.8 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS00360 -0.3 -0.6 adenosylhomocysteinase compare
MMJJ_RS06175 -0.3 -0.9 DUF1743 domain-containing protein compare
MMJJ_RS06490 -0.3 -0.7 methanogenesis marker 2 protein compare
MMJJ_RS05070 -0.3 -0.6 DNA primase catalytic subunit PriS compare
MMJJ_RS03125 -0.3 -1.3 GMC oxidoreductase compare
MMJJ_RS02855 -0.3 -2.0 DEAD/DEAH box helicase compare
MMJJ_RS01875 -0.3 -1.6 global nitrogen regulator NrpR compare
MMJJ_RS03160 -0.3 -2.7 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS06925 -0.3 -1.1 GMP synthase subunit A compare
MMJJ_RS02035 -0.3 -1.9 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS07380 -0.3 -1.9 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS07805 -0.3 -2.2 ferredoxin family protein compare
MMJJ_RS08725 -0.3 -2.6 flippase compare
MMJJ_RS07585 -0.3 -2.5 DHH family phosphoesterase compare
MMJJ_RS08825 -0.3 -1.8 hypothetical protein compare
MMJJ_RS04655 -0.3 -1.4 FAD-dependent oxidoreductase compare
MMJJ_RS08325 -0.3 -0.6 glycosyltransferase family 2 protein compare
MMJJ_RS00265 -0.3 -1.6 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS03875 -0.3 -1.2 CBS domain-containing protein compare
MMJJ_RS00270 -0.3 -0.8 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS04770 -0.3 -0.8 formate-dependent phosphoribosylglycinamide formyltransferase compare
MMJJ_RS07345 -0.3 -1.4 homocysteine biosynthesis protein compare
MMJJ_RS05065 -0.3 -1.2 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS08000 -0.3 -2.2 HesA/MoeB/ThiF family protein compare
MMJJ_RS03845 -0.3 -0.9 translation initiation factor IF-2 compare
MMJJ_RS00995 -0.3 -2.1 TetR/AcrR family transcriptional regulator compare
MMJJ_RS06700 -0.3 -1.0 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS07660 -0.3 -2.2 carbonic anhydrase compare
MMJJ_RS09130 -0.3 -0.7 NFYB/HAP3 family transcription factor subunit compare
MMJJ_RS03710 -0.3 -2.1 DUF2111 domain-containing protein compare
MMJJ_RS07815 -0.3 -2.4 2-oxoacid:acceptor oxidoreductase family protein compare
MMJJ_RS03170 -0.3 -1.5 DUF5612 domain-containing protein compare
MMJJ_RS01865 -0.3 -1.2 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS05970 -0.3 -1.3 MJ0307 family thioredoxin compare
MMJJ_RS08620 -0.3 -1.0 DUF373 family protein compare
MMJJ_RS09300 -0.3 -0.8 hypothetical protein compare
MMJJ_RS07355 -0.3 -1.6 MoaD/ThiS family protein compare
MMJJ_RS09370 -0.3 -1.6 heavy-metal-associated domain-containing protein compare
MMJJ_RS07005 -0.3 -1.2 transcription factor S compare
MMJJ_RS07720 -0.3 -0.6 UPF0058 family protein compare
MMJJ_RS06785 -0.2 -1.8 RNA ligase partner protein compare
MMJJ_RS08340 -0.2 -1.2 archaeoflavoprotein AfpA compare
MMJJ_RS03310 -0.2 -1.0 hypothetical protein compare
MMJJ_RS04475 -0.2 -1.1 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS05780 -0.2 -0.7 flagellin compare
MMJJ_RS02860 -0.2 -1.0 site-specific integrase compare
MMJJ_RS04675 -0.2 -1.2 thiamine pyrophosphate-binding protein compare
MMJJ_RS03920 -0.2 -2.0 nickel pincer cofactor biosynthesis protein LarC compare
MMJJ_RS06255 -0.2 -1.0 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS06005 -0.2 -1.5 energy conserving hydrogenase EhbF compare
MMJJ_RS00440 -0.2 -1.9 selenide, water dikinase SelD compare
MMJJ_RS06480 -0.2 -2.0 hypothetical protein compare
MMJJ_RS06725 -0.2 -1.7 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS04765 -0.2 -1.5 metal-dependent hydrolase compare
MMJJ_RS08130 -0.2 -0.4 translation initiation factor IF-2 subunit gamma compare
MMJJ_RS07970 -0.2 -0.5 O-phospho-L-seryl-tRNA:Cys-tRNA synthase compare
MMJJ_RS07265 -0.2 -1.6 tRNA (adenine-N1)-methyltransferase compare
MMJJ_RS08805 -0.2 -1.5 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
MMJJ_RS04715 -0.2 -1.8 hypothetical protein compare
MMJJ_RS03175 -0.2 -1.8 zinc metalloprotease HtpX compare
MMJJ_RS07375 -0.2 -1.3 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMJJ_RS01815 -0.2 -0.8 DUF134 domain-containing protein compare
MMJJ_RS04525 -0.2 -1.5 hypothetical protein compare
MMJJ_RS05375 -0.2 -1.9 radical SAM protein compare
MMJJ_RS01830 -0.2 -0.8 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS03540 -0.2 -1.5 TIGR00289 family protein compare
MMJJ_RS04515 -0.2 -2.0 HD domain-containing protein compare
MMJJ_RS08520 -0.2 -1.0 peptidylprolyl isomerase compare
MMJJ_RS06210 -0.2 -1.7 hypothetical protein compare
MMJJ_RS06290 -0.2 -1.5 DUF749 domain-containing protein compare
MMJJ_RS02870 -0.2 -1.6 hypothetical protein compare
MMJJ_RS06860 -0.2 -0.9 hypothetical protein compare
MMJJ_RS04955 -0.2 -1.7 tRNA pseudouridine(54/55) synthase Pus10 compare
MMJJ_RS01810 -0.2 -0.4 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS07040 -0.2 -0.3 preprotein translocase subunit SecY compare
MMJJ_RS03815 -0.2 -0.4 nascent polypeptide-associated complex protein compare
MMJJ_RS05160 -0.2 -0.9 RNA-binding protein compare
MMJJ_RS02190 -0.2 -1.8 molybdopterin biosynthesis protein compare
MMJJ_RS02055 -0.2 -1.6 GTP 3',8-cyclase MoaA compare
MMJJ_RS05450 -0.2 -1.7 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS01415 -0.2 -0.5 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS00135 -0.2 -1.2 FmdE family protein compare
MMJJ_RS01870 -0.2 -0.3 methanogenesis marker 15 protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in attachment assay; planktonic sample experiments