Experiment set6S706 for Methanococcus maripaludis JJ

Compare to:

McCas-formate low carbon steel planktonic

200 most important genes:

  gene name fitness t score description  
MMJJ_RS00275 -2.3 -2.7 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS03200 -1.9 -2.9 uroporphyrinogen-III synthase compare
MMJJ_RS05650 -1.8 -2.4 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS05930 -1.8 -2.2 cell division protein SepF compare
MMJJ_RS06390 -1.7 -2.2 NADPH-dependent F420 reductase compare
MMJJ_RS01600 -1.5 -2.5 radical SAM protein compare
MMJJ_RS05620 -1.4 -3.7 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS06840 -1.3 -3.2 nickel-dependent hydrogenase large subunit compare
MMJJ_RS04970 -1.3 -2.3 DUF655 domain-containing protein compare
MMJJ_RS04975 -1.2 -2.3 glycosyltransferase family 4 protein compare
MMJJ_RS05380 -1.2 -1.7 hypothetical protein compare
MMJJ_RS09190 -1.2 -1.2 tryptophan synthase subunit beta compare
MMJJ_RS00210 -1.2 -2.5 DUF530 family protein compare
MMJJ_RS00580 -1.2 -1.8 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS01200 -1.1 -2.2 PRC-barrel domain-containing protein compare
MMJJ_RS07705 -1.1 -2.1 GTP-binding protein EngB compare
MMJJ_RS07275 -1.1 -2.4 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS05225 -1.1 -1.5 Gar1/Naf1 family protein compare
MMJJ_RS01355 -1.0 -2.4 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS08625 -1.0 -4.3 magnesium/cobalt transporter CorA compare
MMJJ_RS03840 -1.0 -2.4 DHH family phosphoesterase compare
MMJJ_RS07720 -1.0 -1.9 UPF0058 family protein compare
MMJJ_RS06700 -1.0 -3.6 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS04730 -1.0 -2.5 tyrosine decarboxylase MfnA compare
MMJJ_RS00570 -1.0 -2.0 ribonuclease P compare
MMJJ_RS06695 -0.9 -1.9 amidohydrolase compare
MMJJ_RS07655 -0.9 -7.9 hypothetical protein compare
MMJJ_RS06625 -0.9 -1.3 pyruvate synthase subunit PorB compare
MMJJ_RS07950 -0.9 -1.8 4Fe-4S binding protein compare
MMJJ_RS08840 -0.9 -2.4 calcium/sodium antiporter compare
MMJJ_RS00355 -0.9 -2.2 ribonuclease P protein component 4 compare
MMJJ_RS00215 -0.9 -2.0 CCA tRNA nucleotidyltransferase compare
MMJJ_RS02040 -0.9 -2.1 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS03095 -0.9 -1.9 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS00360 -0.9 -1.8 adenosylhomocysteinase compare
MMJJ_RS06490 -0.8 -1.1 methanogenesis marker 2 protein compare
MMJJ_RS05720 -0.8 -1.7 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS06875 -0.8 -1.5 hypothetical protein compare
MMJJ_RS06510 -0.8 -1.4 LL-diaminopimelate aminotransferase compare
MMJJ_RS04050 -0.8 -1.4 dihydroneopterin aldolase family protein compare
MMJJ_RS01360 -0.8 -1.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS03965 -0.8 -1.6 DNA-directed RNA polymerase subunit L compare
MMJJ_RS06905 -0.7 -1.3 hypothetical protein compare
MMJJ_RS03845 -0.7 -2.3 translation initiation factor IF-2 compare
MMJJ_RS06485 -0.7 -1.2 phosphoglycerate kinase compare
MMJJ_RS08330 -0.7 -2.0 SufD family Fe-S cluster assembly protein compare
MMJJ_RS03125 -0.7 -2.3 GMC oxidoreductase compare
MMJJ_RS05490 -0.7 -1.6 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS08320 -0.7 -1.7 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS00370 -0.7 -1.4 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS08535 -0.7 -2.1 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS04685 -0.6 -3.4 carbamoyltransferase HypF compare
MMJJ_RS08065 -0.6 -2.3 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS06750 -0.6 -1.0 homoaconitase large subunit compare
MMJJ_RS01870 -0.6 -1.3 methanogenesis marker 15 protein compare
MMJJ_RS07410 -0.6 -2.1 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS03895 -0.6 -1.4 hydrogenase expression/formation protein HypE compare
MMJJ_RS04360 -0.6 -4.8 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS07875 -0.6 -1.3 FAD-dependent oxidoreductase compare
MMJJ_RS03760 -0.6 -1.6 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS07665 -0.6 -5.6 formate dehydrogenase subunit alpha compare
MMJJ_RS03580 -0.6 -1.0 TIGR00303 family protein compare
MMJJ_RS09035 -0.6 -3.1 OB-fold nucleic acid binding domain-containing protein compare
MMJJ_RS05645 -0.6 -2.1 4Fe-4S binding protein compare
MMJJ_RS07345 -0.6 -2.9 homocysteine biosynthesis protein compare
MMJJ_RS08190 -0.6 -1.2 hypothetical protein compare
MMJJ_RS04980 -0.6 -2.2 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS00125 -0.6 -0.9 KEOPS complex subunit Cgi121 compare
MMJJ_RS08080 -0.6 -3.0 TIGR00300 family protein compare
MMJJ_RS01935 -0.6 -1.7 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS07725 -0.6 -1.8 DNA primase DnaG compare
MMJJ_RS01345 -0.6 -2.2 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS08055 -0.5 -2.2 methanogenesis marker 14 protein compare
MMJJ_RS07670 -0.5 -5.1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS07005 -0.5 -3.1 transcription factor S compare
MMJJ_RS07350 -0.5 -1.2 4Fe-4S binding protein compare
MMJJ_RS00475 -0.5 -0.9 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS06865 -0.5 -1.7 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS06180 -0.5 -1.3 tryptophan--tRNA ligase compare
MMJJ_RS07715 -0.5 -1.7 UbiD family decarboxylase compare
MMJJ_RS03785 -0.5 -1.2 hypothetical protein compare
MMJJ_RS00560 -0.5 -1.8 homoisocitrate dehydrogenase compare
MMJJ_RS03245 -0.5 -0.7 UMP kinase compare
MMJJ_RS04110 -0.5 -2.6 hypothetical protein compare
MMJJ_RS07380 -0.5 -2.9 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS06880 -0.5 -0.6 EhaG family protein compare
MMJJ_RS06565 -0.5 -2.7 segregation/condensation protein A compare
MMJJ_RS03810 -0.5 -1.6 AIR synthase-related protein compare
MMJJ_RS07355 -0.5 -3.0 MoaD/ThiS family protein compare
MMJJ_RS04790 -0.5 -1.5 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS03430 -0.5 -2.0 winged helix-turn-helix domain-containing protein compare
MMJJ_RS08795 -0.5 -1.3 phosphoglucosamine mutase compare
MMJJ_RS05610 -0.5 -1.3 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS08155 -0.5 -1.5 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS05135 -0.5 -1.2 50S ribosomal protein L18Ae compare
MMJJ_RS08855 -0.5 -2.0 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS04485 -0.4 -2.9 riboflavin synthase compare
MMJJ_RS04200 -0.4 -1.5 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS07650 -0.4 -4.0 formate/nitrite transporter family protein compare
MMJJ_RS03225 -0.4 -1.2 4Fe-4S binding protein compare
MMJJ_RS00180 -0.4 -2.7 DNA topoisomerase I compare
MMJJ_RS00430 -0.4 -1.7 ribonuclease Z compare
MMJJ_RS06200 -0.4 -0.9 phosphoglycerate dehydrogenase compare
MMJJ_RS08390 -0.4 -1.4 carboxymuconolactone decarboxylase family protein compare
MMJJ_RS07660 -0.4 -2.8 carbonic anhydrase compare
MMJJ_RS03075 -0.4 -3.6 sodium-dependent transporter compare
MMJJ_RS06040 -0.4 -1.4 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS05260 -0.4 -1.7 ATP-grasp domain-containing protein compare
MMJJ_RS08340 -0.4 -2.1 archaeoflavoprotein AfpA compare
MMJJ_RS04675 -0.4 -1.8 thiamine pyrophosphate-binding protein compare
MMJJ_RS05415 -0.4 -0.9 hypothetical protein compare
MMJJ_RS02045 -0.4 -1.3 molybdenum cofactor guanylyltransferase compare
MMJJ_RS03660 -0.4 -1.4 DUF447 family protein compare
MMJJ_RS00600 -0.4 -1.0 hydroxymethylbilane synthase compare
MMJJ_RS03160 -0.4 -3.5 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS06150 -0.4 -2.0 DUF483 domain-containing protein compare
MMJJ_RS08810 -0.4 -0.8 DUF4040 domain-containing protein compare
MMJJ_RS07585 -0.4 -3.1 DHH family phosphoesterase compare
MMJJ_RS05995 -0.4 -0.6 ATP-binding cassette domain-containing protein compare
MMJJ_RS04995 -0.4 -1.5 Tfx family DNA-binding protein compare
MMJJ_RS07015 -0.4 -0.9 PFL family protein compare
MMJJ_RS04135 -0.4 -2.1 7-cyano-7-deazaguanine synthase QueC compare
MMJJ_RS05540 -0.4 -3.4 LysR family transcriptional regulator compare
MMJJ_RS07945 -0.4 -0.9 4Fe-4S binding protein compare
MMJJ_RS07165 -0.4 -3.5 chromosome segregation protein SMC compare
MMJJ_RS03635 -0.4 -1.3 methionine--tRNA ligase compare
MMJJ_RS03185 -0.4 -0.7 alanine--tRNA ligase compare
MMJJ_RS05765 -0.4 -0.8 flagellar protein E compare
MMJJ_RS05710 -0.4 -1.7 single-stranded-DNA-specific exonuclease RecJ compare
MMJJ_RS07815 -0.4 -3.2 2-oxoacid:acceptor oxidoreductase family protein compare
MMJJ_RS03005 -0.4 -1.1 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS00265 -0.4 -1.9 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS07040 -0.4 -0.6 preprotein translocase subunit SecY compare
MMJJ_RS03490 -0.4 -0.9 ribonuclease VapC compare
MMJJ_RS05445 -0.4 -0.7 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS08660 -0.3 -1.0 acetylornithine transaminase compare
MMJJ_RS06725 -0.3 -2.4 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS03230 -0.3 -1.4 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS05360 -0.3 -2.1 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS07415 -0.3 -1.0 polyprenyl diphosphate synthase compare
MMJJ_RS03865 -0.3 -0.5 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS08850 -0.3 -0.7 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS08005 -0.3 -2.9 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS05295 -0.3 -2.1 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS03250 -0.3 -1.8 DUF2116 family Zn-ribbon domain-containing protein compare
MMJJ_RS01410 -0.3 -1.4 archaeal proteasome endopeptidase complex subunit beta compare
MMJJ_RS01865 -0.3 -1.3 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS09135 -0.3 -2.1 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS05780 -0.3 -1.1 flagellin compare
MMJJ_RS06155 -0.3 -1.2 phosphatidylglycerophosphatase A compare
MMJJ_RS01785 -0.3 -0.8 50S ribosomal protein L14e compare
MMJJ_RS04475 -0.3 -1.2 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS07265 -0.3 -2.2 tRNA (adenine-N1)-methyltransferase compare
MMJJ_RS08520 -0.3 -1.4 peptidylprolyl isomerase compare
MMJJ_RS01475 -0.3 -0.7 signal recognition particle-docking protein FtsY compare
MMJJ_RS05575 -0.3 -1.0 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS01875 -0.3 -1.2 global nitrogen regulator NrpR compare
MMJJ_RS05070 -0.3 -0.5 DNA primase catalytic subunit PriS compare
MMJJ_RS08235 -0.3 -1.7 UPF0147 family protein compare
MMJJ_RS08865 -0.3 -2.0 class IV adenylate cyclase compare
MMJJ_RS08170 -0.3 -0.5 diaminopimelate decarboxylase compare
MMJJ_RS08725 -0.3 -2.4 flippase compare
MMJJ_RS02935 -0.3 -1.2 DNA-directed RNA polymerase subunit E'' compare
MMJJ_RS04155 -0.3 -1.3 hypothetical protein compare
MMJJ_RS08010 -0.3 -1.4 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS04655 -0.3 -1.3 FAD-dependent oxidoreductase compare
MMJJ_RS05655 -0.3 -1.3 HisA/HisF family protein compare
MMJJ_RS06600 -0.3 -0.6 DUF555 domain-containing protein compare
MMJJ_RS01860 -0.3 -2.1 tRNA guanosine(15) transglycosylase TgtA compare
MMJJ_RS05375 -0.3 -2.3 radical SAM protein compare
MMJJ_RS00550 -0.3 -2.1 AIR synthase-related protein compare
MMJJ_RS08430 -0.3 -1.6 small nuclear ribonucleoprotein compare
MMJJ_RS02275 -0.3 -0.8 nucleotidyltransferase domain-containing protein compare
MMJJ_RS07505 -0.3 -0.5 DNA-directed RNA polymerase subunit K compare
MMJJ_RS07805 -0.3 -1.9 ferredoxin family protein compare
MMJJ_RS06915 -0.2 -2.2 helix-turn-helix domain-containing protein compare
MMJJ_RS06110 -0.2 -0.5 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS01765 -0.2 -2.0 winged helix-turn-helix domain-containing protein compare
MMJJ_RS06480 -0.2 -2.2 hypothetical protein compare
MMJJ_RS01925 -0.2 -1.6 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMJJ_RS06375 -0.2 -1.2 UbiX family flavin prenyltransferase compare
MMJJ_RS02190 -0.2 -2.2 molybdopterin biosynthesis protein compare
MMJJ_RS07985 -0.2 -1.7 hypothetical protein compare
MMJJ_RS03110 -0.2 -0.7 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS08825 -0.2 -1.3 hypothetical protein compare
MMJJ_RS08805 -0.2 -1.6 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
MMJJ_RS03775 -0.2 -1.1 50S ribosomal protein L15e compare
MMJJ_RS04145 -0.2 -1.5 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS02205 -0.2 -2.0 hypothetical protein compare
MMJJ_RS00035 -0.2 -2.1 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS01670 -0.2 -1.5 hypothetical protein compare
MMJJ_RS08000 -0.2 -1.8 HesA/MoeB/ThiF family protein compare
MMJJ_RS05770 -0.2 -0.6 flagellar protein D compare
MMJJ_RS08500 -0.2 -1.3 L-sulfolactate dehydrogenase compare
MMJJ_RS03590 -0.2 -1.2 restriction endonuclease compare
MMJJ_RS05535 -0.2 -1.7 hypothetical protein compare
MMJJ_RS07995 -0.2 -1.0 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS03920 -0.2 -1.9 nickel pincer cofactor biosynthesis protein LarC compare
MMJJ_RS03835 -0.2 -1.5 DUF504 domain-containing protein compare
MMJJ_RS08250 -0.2 -1.1 hydrogenase maturation peptidase HycI compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in attachment assay; planktonic sample experiments