Experiment set6S705 for Methanococcus maripaludis JJ

Compare to:

McCas-formate low carbon steel planktonic

200 most important genes:

  gene name fitness t score description  
MMJJ_RS07720 -1.6 -2.3 UPF0058 family protein compare
MMJJ_RS00210 -1.6 -2.2 DUF530 family protein compare
MMJJ_RS03580 -1.5 -2.8 TIGR00303 family protein compare
MMJJ_RS06250 -1.3 -2.4 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS01360 -1.3 -2.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS04730 -1.3 -3.0 tyrosine decarboxylase MfnA compare
MMJJ_RS02040 -1.2 -3.2 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS07040 -1.2 -1.6 preprotein translocase subunit SecY compare
MMJJ_RS01200 -1.1 -2.5 PRC-barrel domain-containing protein compare
MMJJ_RS03785 -1.1 -1.9 hypothetical protein compare
MMJJ_RS04770 -1.1 -2.9 formate-dependent phosphoribosylglycinamide formyltransferase compare
MMJJ_RS07350 -1.0 -2.3 4Fe-4S binding protein compare
MMJJ_RS05330 -1.0 -1.8 DNA polymerase II large subunit compare
MMJJ_RS07725 -1.0 -3.2 DNA primase DnaG compare
MMJJ_RS04975 -1.0 -1.4 glycosyltransferase family 4 protein compare
MMJJ_RS03965 -1.0 -1.7 DNA-directed RNA polymerase subunit L compare
MMJJ_RS06175 -1.0 -1.5 DUF1743 domain-containing protein compare
MMJJ_RS05720 -1.0 -1.6 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS01750 -1.0 -1.7 ferrous iron transport protein A compare
MMJJ_RS02920 -0.9 -1.6 30S ribosomal protein S27ae compare
MMJJ_RS03760 -0.9 -2.4 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS00450 -0.9 -2.0 DUF126 domain-containing protein compare
MMJJ_RS06600 -0.9 -1.9 DUF555 domain-containing protein compare
MMJJ_RS06910 -0.9 -1.6 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS05645 -0.9 -2.9 4Fe-4S binding protein compare
MMJJ_RS06860 -0.9 -2.8 hypothetical protein compare
MMJJ_RS01355 -0.9 -2.2 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS06750 -0.9 -1.5 homoaconitase large subunit compare
MMJJ_RS07655 -0.9 -7.5 hypothetical protein compare
MMJJ_RS09375 -0.9 -1.6 hypothetical protein compare
MMJJ_RS04155 -0.9 -3.1 hypothetical protein compare
MMJJ_RS07360 -0.9 -1.5 TIGR00269 family protein compare
MMJJ_RS03005 -0.9 -2.3 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS08330 -0.9 -1.7 SufD family Fe-S cluster assembly protein compare
MMJJ_RS05935 -0.9 -1.5 Era-like GTP-binding protein compare
MMJJ_RS04970 -0.9 -1.7 DUF655 domain-containing protein compare
MMJJ_RS00360 -0.8 -1.6 adenosylhomocysteinase compare
MMJJ_RS01755 -0.8 -1.6 ferrous iron transport protein B compare
MMJJ_RS03615 -0.8 -1.4 cobalt-precorrin-8 methylmutase compare
MMJJ_RS07415 -0.8 -1.9 polyprenyl diphosphate synthase compare
MMJJ_RS06840 -0.7 -1.9 nickel-dependent hydrogenase large subunit compare
MMJJ_RS01475 -0.7 -1.2 signal recognition particle-docking protein FtsY compare
MMJJ_RS03840 -0.7 -1.9 DHH family phosphoesterase compare
MMJJ_RS08625 -0.7 -3.1 magnesium/cobalt transporter CorA compare
MMJJ_RS06380 -0.7 -2.7 signal recognition particle protein Srp54 compare
MMJJ_RS08095 -0.7 -2.2 cobyric acid synthase CobQ compare
MMJJ_RS04050 -0.7 -1.3 dihydroneopterin aldolase family protein compare
MMJJ_RS03110 -0.7 -1.8 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS00275 -0.7 -1.3 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS03150 -0.7 -2.9 2-phospho-L-lactate transferase compare
MMJJ_RS05710 -0.7 -2.3 single-stranded-DNA-specific exonuclease RecJ compare
MMJJ_RS02275 -0.6 -2.0 nucleotidyltransferase domain-containing protein compare
MMJJ_RS06855 -0.6 -0.9 DUF2104 domain-containing protein compare
MMJJ_RS05620 -0.6 -1.7 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS00355 -0.6 -1.6 ribonuclease P protein component 4 compare
MMJJ_RS07410 -0.6 -1.8 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS08080 -0.6 -3.6 TIGR00300 family protein compare
MMJJ_RS07035 -0.6 -1.4 glycosyl transferase compare
MMJJ_RS01345 -0.6 -2.7 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS05770 -0.6 -1.4 flagellar protein D compare
MMJJ_RS05930 -0.6 -0.7 cell division protein SepF compare
MMJJ_RS07950 -0.6 -1.5 4Fe-4S binding protein compare
MMJJ_RS07665 -0.5 -5.2 formate dehydrogenase subunit alpha compare
MMJJ_RS03865 -0.5 -0.7 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS07660 -0.5 -4.0 carbonic anhydrase compare
MMJJ_RS08065 -0.5 -2.4 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS07245 -0.5 -2.5 amidohydrolase family protein compare
MMJJ_RS06565 -0.5 -3.5 segregation/condensation protein A compare
MMJJ_RS05995 -0.5 -0.8 ATP-binding cassette domain-containing protein compare
MMJJ_RS06725 -0.5 -3.7 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS00125 -0.5 -1.1 KEOPS complex subunit Cgi121 compare
MMJJ_RS00570 -0.5 -0.9 ribonuclease P compare
MMJJ_RS07970 -0.5 -1.3 O-phospho-L-seryl-tRNA:Cys-tRNA synthase compare
MMJJ_RS07705 -0.5 -1.0 GTP-binding protein EngB compare
MMJJ_RS04150 -0.5 -1.3 DUF5379 domain-containing protein compare
MMJJ_RS04360 -0.5 -3.7 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS07650 -0.5 -4.3 formate/nitrite transporter family protein compare
MMJJ_RS00180 -0.5 -3.0 DNA topoisomerase I compare
MMJJ_RS07670 -0.5 -4.3 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS03310 -0.5 -2.0 hypothetical protein compare
MMJJ_RS02045 -0.5 -1.5 molybdenum cofactor guanylyltransferase compare
MMJJ_RS07875 -0.5 -1.3 FAD-dependent oxidoreductase compare
MMJJ_RS09120 -0.5 -0.6 aspartate kinase compare
MMJJ_RS08320 -0.4 -0.9 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS07840 -0.4 -0.9 Glu-tRNA(Gln) amidotransferase subunit GatD compare
MMJJ_RS07005 -0.4 -2.5 transcription factor S compare
MMJJ_RS04655 -0.4 -1.9 FAD-dependent oxidoreductase compare
MMJJ_RS08230 -0.4 -1.7 ribose-5-phosphate isomerase RpiA compare
MMJJ_RS00475 -0.4 -1.0 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS06865 -0.4 -1.1 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS01880 -0.4 -1.2 RlmE family RNA methyltransferase compare
MMJJ_RS07190 -0.4 -1.5 RtcB family protein compare
MMJJ_RS05950 -0.4 -1.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS04200 -0.4 -1.7 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS05380 -0.4 -0.8 hypothetical protein compare
MMJJ_RS04485 -0.4 -2.5 riboflavin synthase compare
MMJJ_RS03075 -0.4 -3.3 sodium-dependent transporter compare
MMJJ_RS07165 -0.4 -3.7 chromosome segregation protein SMC compare
MMJJ_RS09135 -0.4 -2.6 archaeosine biosynthesis radical SAM protein RaSEA compare
MMJJ_RS02055 -0.4 -3.1 GTP 3',8-cyclase MoaA compare
MMJJ_RS02035 -0.4 -2.6 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS08005 -0.4 -3.4 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS04620 -0.4 -0.9 homocitrate synthase family protein compare
MMJJ_RS06485 -0.4 -0.6 phosphoglycerate kinase compare
MMJJ_RS08055 -0.4 -1.4 methanogenesis marker 14 protein compare
MMJJ_RS09035 -0.4 -1.3 OB-fold nucleic acid binding domain-containing protein compare
MMJJ_RS03540 -0.4 -1.9 TIGR00289 family protein compare
MMJJ_RS07995 -0.4 -2.4 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS08535 -0.4 -0.8 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS00220 -0.4 -2.2 UPF0058 family protein compare
MMJJ_RS04110 -0.4 -2.3 hypothetical protein compare
MMJJ_RS03360 -0.4 -1.0 hypothetical protein compare
MMJJ_RS03160 -0.4 -3.1 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS06110 -0.4 -0.8 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS07345 -0.4 -1.9 homocysteine biosynthesis protein compare
MMJJ_RS05655 -0.4 -1.5 HisA/HisF family protein compare
MMJJ_RS03765 -0.3 -2.1 hypothetical protein compare
MMJJ_RS06905 -0.3 -0.6 hypothetical protein compare
MMJJ_RS01960 -0.3 -2.1 glycosyltransferase family 2 protein compare
MMJJ_RS08840 -0.3 -1.2 calcium/sodium antiporter compare
MMJJ_RS06625 -0.3 -0.7 pyruvate synthase subunit PorB compare
MMJJ_RS06375 -0.3 -1.7 UbiX family flavin prenyltransferase compare
MMJJ_RS07585 -0.3 -2.7 DHH family phosphoesterase compare
MMJJ_RS07765 -0.3 -2.4 DMT family protein compare
MMJJ_RS02090 -0.3 -1.5 tyramine--L-glutamate ligase compare
MMJJ_RS05540 -0.3 -3.1 LysR family transcriptional regulator compare
MMJJ_RS06050 -0.3 -2.7 molybdopterin molybdotransferase MoeA compare
MMJJ_RS06700 -0.3 -1.5 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS06155 -0.3 -1.2 phosphatidylglycerophosphatase A compare
MMJJ_RS07265 -0.3 -2.5 tRNA (adenine-N1)-methyltransferase compare
MMJJ_RS00205 -0.3 -1.4 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS01405 -0.3 -0.8 proline--tRNA ligase compare
MMJJ_RS04675 -0.3 -1.4 thiamine pyrophosphate-binding protein compare
MMJJ_RS08825 -0.3 -2.2 hypothetical protein compare
MMJJ_RS08250 -0.3 -1.4 hydrogenase maturation peptidase HycI compare
MMJJ_RS07810 -0.3 -2.7 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMJJ_RS07355 -0.3 -2.2 MoaD/ThiS family protein compare
MMJJ_RS08850 -0.3 -0.8 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS08865 -0.3 -2.5 class IV adenylate cyclase compare
MMJJ_RS06200 -0.3 -0.9 phosphoglycerate dehydrogenase compare
MMJJ_RS03660 -0.3 -1.1 DUF447 family protein compare
MMJJ_RS06185 -0.3 -1.3 cobalamin biosynthesis protein compare
MMJJ_RS00370 -0.3 -0.7 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS01410 -0.3 -1.7 archaeal proteasome endopeptidase complex subunit beta compare
MMJJ_RS07000 -0.3 -0.5 TrkH family potassium uptake protein compare
MMJJ_RS03170 -0.3 -1.7 DUF5612 domain-containing protein compare
MMJJ_RS06040 -0.3 -0.9 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS06340 -0.3 -1.1 coenzyme-B sulfoethylthiotransferase subunit alpha compare
MMJJ_RS03810 -0.3 -1.0 AIR synthase-related protein compare
MMJJ_RS04135 -0.3 -1.8 7-cyano-7-deazaguanine synthase QueC compare
MMJJ_RS05420 -0.3 -0.8 DNA-directed DNA polymerase II small subunit compare
MMJJ_RS03820 -0.3 -0.8 hydrogenase formation protein HypD compare
MMJJ_RS05360 -0.3 -1.7 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS06875 -0.3 -0.4 hypothetical protein compare
MMJJ_RS08710 -0.3 -2.2 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMJJ_RS04685 -0.3 -1.4 carbamoyltransferase HypF compare
MMJJ_RS00560 -0.3 -0.8 homoisocitrate dehydrogenase compare
MMJJ_RS00065 -0.3 -2.2 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS04765 -0.2 -1.9 metal-dependent hydrolase compare
MMJJ_RS03095 -0.2 -0.7 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS08430 -0.2 -1.8 small nuclear ribonucleoprotein compare
MMJJ_RS02190 -0.2 -2.1 molybdopterin biosynthesis protein compare
MMJJ_RS06210 -0.2 -1.7 hypothetical protein compare
MMJJ_RS03190 -0.2 -0.6 phosphopyruvate hydratase compare
MMJJ_RS04615 -0.2 -0.9 methanogenesis marker 3 protein compare
MMJJ_RS02855 -0.2 -1.5 DEAD/DEAH box helicase compare
MMJJ_RS00995 -0.2 -2.0 TetR/AcrR family transcriptional regulator compare
MMJJ_RS01590 -0.2 -1.0 adenine phosphoribosyltransferase compare
MMJJ_RS04545 -0.2 -0.9 PadR family transcriptional regulator compare
MMJJ_RS06820 -0.2 -1.2 CBS domain-containing protein compare
MMJJ_RS05810 -0.2 -1.1 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS04850 -0.2 -1.9 energy-coupling factor transporter transmembrane protein EcfT compare
MMJJ_RS06150 -0.2 -1.1 DUF483 domain-containing protein compare
MMJJ_RS04680 -0.2 -1.6 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMJJ_RS05165 -0.2 -1.6 class I SAM-dependent methyltransferase compare
MMJJ_RS05140 -0.2 -1.6 DUF2666 domain-containing protein compare
MMJJ_RS00550 -0.2 -1.7 AIR synthase-related protein compare
MMJJ_RS06170 -0.2 -1.6 hypothetical protein compare
MMJJ_RS07275 -0.2 -0.6 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS05765 -0.2 -0.4 flagellar protein E compare
MMJJ_RS08000 -0.2 -1.8 HesA/MoeB/ThiF family protein compare
MMJJ_RS01925 -0.2 -1.5 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMJJ_RS09190 -0.2 -0.5 tryptophan synthase subunit beta compare
MMJJ_RS00270 -0.2 -0.6 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS03270 -0.2 -0.3 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS01350 -0.2 -0.8 sodium:proton antiporter compare
MMJJ_RS08725 -0.2 -1.9 flippase compare
MMJJ_RS04995 -0.2 -0.9 Tfx family DNA-binding protein compare
MMJJ_RS08010 -0.2 -1.3 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS04340 -0.2 -1.0 hypothetical protein compare
MMJJ_RS09085 -0.2 -1.8 minichromosome maintenance protein MCM compare
MMJJ_RS03295 -0.2 -1.5 PHP domain-containing protein compare
MMJJ_RS05575 -0.2 -0.9 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS00075 -0.2 -1.6 AAA family ATPase compare
MMJJ_RS08500 -0.2 -1.4 L-sulfolactate dehydrogenase compare
MMJJ_RS08190 -0.2 -0.5 hypothetical protein compare
MMJJ_RS02870 -0.2 -1.7 hypothetical protein compare
MMJJ_RS08155 -0.2 -0.5 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS08130 -0.2 -0.3 translation initiation factor IF-2 subunit gamma compare
MMJJ_RS03225 -0.2 -0.7 4Fe-4S binding protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in attachment assay; planktonic sample experiments