Experiment set6S703 for Methanococcus maripaludis JJ

Compare to:

McCas-formate glass planktonic

200 most important genes:

  gene name fitness t score description  
MMJJ_RS02920 -2.1 -2.3 30S ribosomal protein S27ae compare
MMJJ_RS06390 -2.1 -2.2 NADPH-dependent F420 reductase compare
MMJJ_RS03840 -1.6 -3.4 DHH family phosphoesterase compare
MMJJ_RS00450 -1.5 -2.6 DUF126 domain-containing protein compare
MMJJ_RS05710 -1.2 -4.3 single-stranded-DNA-specific exonuclease RecJ compare
MMJJ_RS03815 -1.2 -2.4 nascent polypeptide-associated complex protein compare
MMJJ_RS01830 -1.2 -2.9 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS06910 -1.2 -1.6 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS03190 -1.2 -2.1 phosphopyruvate hydratase compare
MMJJ_RS03200 -1.2 -1.3 uroporphyrinogen-III synthase compare
MMJJ_RS08065 -1.1 -4.9 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS08625 -1.1 -4.1 magnesium/cobalt transporter CorA compare
MMJJ_RS07950 -1.1 -2.1 4Fe-4S binding protein compare
MMJJ_RS07415 -1.1 -2.7 polyprenyl diphosphate synthase compare
MMJJ_RS01880 -1.1 -2.8 RlmE family RNA methyltransferase compare
MMJJ_RS07000 -1.1 -1.7 TrkH family potassium uptake protein compare
MMJJ_RS09130 -1.1 -1.6 NFYB/HAP3 family transcription factor subunit compare
MMJJ_RS07655 -1.1 -8.8 hypothetical protein compare
MMJJ_RS04770 -1.0 -2.4 formate-dependent phosphoribosylglycinamide formyltransferase compare
MMJJ_RS06200 -1.0 -2.6 phosphoglycerate dehydrogenase compare
MMJJ_RS01355 -1.0 -2.7 UDP-N-acetyl-D-mannosamine dehydrogenase compare
MMJJ_RS06225 -0.9 -1.5 adenosylmethionine decarboxylase compare
MMJJ_RS01200 -0.9 -1.9 PRC-barrel domain-containing protein compare
MMJJ_RS00360 -0.9 -2.3 adenosylhomocysteinase compare
MMJJ_RS06860 -0.9 -3.2 hypothetical protein compare
MMJJ_RS08535 -0.9 -2.2 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS01935 -0.9 -1.7 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS04975 -0.9 -1.3 glycosyltransferase family 4 protein compare
MMJJ_RS01600 -0.8 -1.5 radical SAM protein compare
MMJJ_RS05620 -0.8 -2.3 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS06180 -0.8 -1.9 tryptophan--tRNA ligase compare
MMJJ_RS05765 -0.8 -0.8 flagellar protein E compare
MMJJ_RS03125 -0.8 -2.3 GMC oxidoreductase compare
MMJJ_RS00215 -0.8 -1.4 CCA tRNA nucleotidyltransferase compare
MMJJ_RS04675 -0.8 -3.4 thiamine pyrophosphate-binding protein compare
MMJJ_RS05930 -0.8 -1.0 cell division protein SepF compare
MMJJ_RS06255 -0.8 -3.7 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS08095 -0.8 -2.3 cobyric acid synthase CobQ compare
MMJJ_RS04475 -0.8 -2.7 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS06905 -0.8 -1.2 hypothetical protein compare
MMJJ_RS07350 -0.7 -2.0 4Fe-4S binding protein compare
MMJJ_RS08230 -0.7 -2.2 ribose-5-phosphate isomerase RpiA compare
MMJJ_RS01690 -0.7 -1.4 methanogenesis marker 12 protein compare
MMJJ_RS06855 -0.7 -1.5 DUF2104 domain-containing protein compare
MMJJ_RS05445 -0.7 -1.3 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS00125 -0.7 -1.1 KEOPS complex subunit Cgi121 compare
MMJJ_RS04970 -0.7 -1.1 DUF655 domain-containing protein compare
MMJJ_RS06215 -0.7 -2.6 agmatinase compare
MMJJ_RS06840 -0.7 -1.8 nickel-dependent hydrogenase large subunit compare
MMJJ_RS06185 -0.7 -2.5 cobalamin biosynthesis protein compare
MMJJ_RS04655 -0.7 -2.8 FAD-dependent oxidoreductase compare
MMJJ_RS08795 -0.7 -1.2 phosphoglucosamine mutase compare
MMJJ_RS06490 -0.7 -1.2 methanogenesis marker 2 protein compare
MMJJ_RS08155 -0.7 -2.1 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS04150 -0.7 -1.5 DUF5379 domain-containing protein compare
MMJJ_RS03490 -0.7 -2.0 ribonuclease VapC compare
MMJJ_RS05995 -0.6 -0.8 ATP-binding cassette domain-containing protein compare
MMJJ_RS05770 -0.6 -1.6 flagellar protein D compare
MMJJ_RS08850 -0.6 -1.2 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS05225 -0.6 -1.1 Gar1/Naf1 family protein compare
MMJJ_RS00600 -0.6 -1.6 hydroxymethylbilane synthase compare
MMJJ_RS07015 -0.6 -0.9 PFL family protein compare
MMJJ_RS07715 -0.6 -2.4 UbiD family decarboxylase compare
MMJJ_RS04520 -0.6 -2.5 coenzyme F430 synthase compare
MMJJ_RS03615 -0.6 -1.1 cobalt-precorrin-8 methylmutase compare
MMJJ_RS07665 -0.6 -5.7 formate dehydrogenase subunit alpha compare
MMJJ_RS06040 -0.6 -1.9 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS05330 -0.6 -1.0 DNA polymerase II large subunit compare
MMJJ_RS01810 -0.6 -1.3 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS01100 -0.6 -1.6 helix-turn-helix domain-containing protein compare
MMJJ_RS07370 -0.6 -3.1 tRNA 4-thiouridine(8) synthase ThiI compare
MMJJ_RS04790 -0.6 -1.5 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS07725 -0.6 -2.5 DNA primase DnaG compare
MMJJ_RS08620 -0.6 -2.6 DUF373 family protein compare
MMJJ_RS07275 -0.6 -1.4 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS08330 -0.6 -1.7 SufD family Fe-S cluster assembly protein compare
MMJJ_RS06930 -0.6 -1.1 type II methionyl aminopeptidase compare
MMJJ_RS06875 -0.6 -1.4 hypothetical protein compare
MMJJ_RS06380 -0.6 -1.8 signal recognition particle protein Srp54 compare
MMJJ_RS07360 -0.6 -1.1 TIGR00269 family protein compare
MMJJ_RS04155 -0.6 -2.4 hypothetical protein compare
MMJJ_RS00265 -0.5 -3.3 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS09035 -0.5 -2.0 OB-fold nucleic acid binding domain-containing protein compare
MMJJ_RS08320 -0.5 -1.1 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS07670 -0.5 -4.9 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS00550 -0.5 -3.6 AIR synthase-related protein compare
MMJJ_RS03845 -0.5 -1.6 translation initiation factor IF-2 compare
MMJJ_RS05065 -0.5 -2.1 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS06155 -0.5 -1.9 phosphatidylglycerophosphatase A compare
MMJJ_RS01960 -0.5 -3.1 glycosyltransferase family 2 protein compare
MMJJ_RS04110 -0.5 -2.4 hypothetical protein compare
MMJJ_RS06150 -0.5 -2.2 DUF483 domain-containing protein compare
MMJJ_RS05610 -0.5 -1.7 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS06575 -0.5 -1.2 prephenate dehydrogenase compare
MMJJ_RS05655 -0.5 -2.3 HisA/HisF family protein compare
MMJJ_RS06695 -0.5 -0.9 amidohydrolase compare
MMJJ_RS02090 -0.5 -1.9 tyramine--L-glutamate ligase compare
MMJJ_RS07005 -0.5 -3.3 transcription factor S compare
MMJJ_RS04995 -0.5 -1.8 Tfx family DNA-binding protein compare
MMJJ_RS03820 -0.5 -1.5 hydrogenase formation protein HypD compare
MMJJ_RS01475 -0.5 -0.9 signal recognition particle-docking protein FtsY compare
MMJJ_RS04360 -0.5 -3.9 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS02035 -0.5 -2.5 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS06565 -0.5 -3.5 segregation/condensation protein A compare
MMJJ_RS04485 -0.5 -3.0 riboflavin synthase compare
MMJJ_RS05360 -0.5 -2.7 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS03810 -0.5 -1.3 AIR synthase-related protein compare
MMJJ_RS07720 -0.5 -0.9 UPF0058 family protein compare
MMJJ_RS01350 -0.5 -1.5 sodium:proton antiporter compare
MMJJ_RS00180 -0.5 -2.9 DNA topoisomerase I compare
MMJJ_RS08935 -0.5 -0.9 TIGR00288 family NYN domain-containing protein compare
MMJJ_RS01875 -0.5 -2.1 global nitrogen regulator NrpR compare
MMJJ_RS06175 -0.5 -0.9 DUF1743 domain-containing protein compare
MMJJ_RS07245 -0.4 -1.9 amidohydrolase family protein compare
MMJJ_RS07165 -0.4 -4.0 chromosome segregation protein SMC compare
MMJJ_RS06725 -0.4 -3.0 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS05295 -0.4 -2.8 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS04670 -0.4 -1.8 DUF2117 domain-containing protein compare
MMJJ_RS04685 -0.4 -2.4 carbamoyltransferase HypF compare
MMJJ_RS00570 -0.4 -0.8 ribonuclease P compare
MMJJ_RS03225 -0.4 -1.5 4Fe-4S binding protein compare
MMJJ_RS08335 -0.4 -1.1 ABC transporter ATP-binding protein compare
MMJJ_RS07380 -0.4 -2.3 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS07650 -0.4 -3.7 formate/nitrite transporter family protein compare
MMJJ_RS01345 -0.4 -1.6 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS07490 -0.4 -1.0 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMJJ_RS06915 -0.4 -3.2 helix-turn-helix domain-containing protein compare
MMJJ_RS03865 -0.4 -0.6 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS08865 -0.4 -2.9 class IV adenylate cyclase compare
MMJJ_RS08725 -0.4 -3.4 flippase compare
MMJJ_RS00270 -0.4 -1.2 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS05280 -0.4 -0.6 hypothetical protein compare
MMJJ_RS07660 -0.4 -2.6 carbonic anhydrase compare
MMJJ_RS03160 -0.4 -3.3 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS08080 -0.4 -2.5 TIGR00300 family protein compare
MMJJ_RS08005 -0.4 -3.2 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS00210 -0.4 -1.0 DUF530 family protein compare
MMJJ_RS01070 -0.4 -0.8 PadR family transcriptional regulator compare
MMJJ_RS05540 -0.4 -3.4 LysR family transcriptional regulator compare
MMJJ_RS08340 -0.4 -1.4 archaeoflavoprotein AfpA compare
MMJJ_RS08660 -0.4 -0.7 acetylornithine transaminase compare
MMJJ_RS00355 -0.4 -1.1 ribonuclease P protein component 4 compare
MMJJ_RS07810 -0.4 -3.0 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMJJ_RS08825 -0.4 -2.2 hypothetical protein compare
MMJJ_RS05780 -0.4 -1.1 flagellin compare
MMJJ_RS00065 -0.3 -2.8 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS06050 -0.3 -2.8 molybdopterin molybdotransferase MoeA compare
MMJJ_RS03670 -0.3 -1.1 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS08010 -0.3 -1.8 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS05070 -0.3 -0.6 DNA primase catalytic subunit PriS compare
MMJJ_RS02190 -0.3 -3.0 molybdopterin biosynthesis protein compare
MMJJ_RS03155 -0.3 -2.6 hypothetical protein compare
MMJJ_RS03075 -0.3 -2.8 sodium-dependent transporter compare
MMJJ_RS07355 -0.3 -1.7 MoaD/ThiS family protein compare
MMJJ_RS03585 -0.3 -0.6 methanogenesis marker 6 protein compare
MMJJ_RS03775 -0.3 -1.9 50S ribosomal protein L15e compare
MMJJ_RS03875 -0.3 -1.2 CBS domain-containing protein compare
MMJJ_RS03895 -0.3 -1.1 hydrogenase expression/formation protein HypE compare
MMJJ_RS06835 -0.3 -2.7 4Fe-4S binding protein compare
MMJJ_RS06210 -0.3 -2.3 hypothetical protein compare
MMJJ_RS01765 -0.3 -2.3 winged helix-turn-helix domain-containing protein compare
MMJJ_RS04615 -0.3 -1.0 methanogenesis marker 3 protein compare
MMJJ_RS06485 -0.3 -0.6 phosphoglycerate kinase compare
MMJJ_RS02855 -0.3 -2.0 DEAD/DEAH box helicase compare
MMJJ_RS03785 -0.3 -0.7 hypothetical protein compare
MMJJ_RS09375 -0.3 -0.6 hypothetical protein compare
MMJJ_RS07875 -0.3 -0.7 FAD-dependent oxidoreductase compare
MMJJ_RS03270 -0.3 -0.8 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS03835 -0.3 -1.9 DUF504 domain-containing protein compare
MMJJ_RS04765 -0.3 -2.2 metal-dependent hydrolase compare
MMJJ_RS07995 -0.3 -1.8 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS02055 -0.3 -2.6 GTP 3',8-cyclase MoaA compare
MMJJ_RS03250 -0.3 -1.0 DUF2116 family Zn-ribbon domain-containing protein compare
MMJJ_RS04565 -0.3 -1.0 sirohydrochlorin nickelochelatase compare
MMJJ_RS05645 -0.3 -1.2 4Fe-4S binding protein compare
MMJJ_RS05720 -0.3 -0.7 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS08430 -0.3 -1.6 small nuclear ribonucleoprotein compare
MMJJ_RS06625 -0.3 -0.6 pyruvate synthase subunit PorB compare
MMJJ_RS03540 -0.3 -1.9 TIGR00289 family protein compare
MMJJ_RS03005 -0.3 -0.7 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS04135 -0.3 -1.7 7-cyano-7-deazaguanine synthase QueC compare
MMJJ_RS03660 -0.3 -0.9 DUF447 family protein compare
MMJJ_RS07705 -0.3 -0.8 GTP-binding protein EngB compare
MMJJ_RS07345 -0.3 -1.6 homocysteine biosynthesis protein compare
MMJJ_RS06375 -0.3 -1.3 UbiX family flavin prenyltransferase compare
MMJJ_RS03760 -0.3 -0.5 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS06785 -0.3 -2.0 RNA ligase partner protein compare
MMJJ_RS00440 -0.3 -2.2 selenide, water dikinase SelD compare
MMJJ_RS03580 -0.3 -0.5 TIGR00303 family protein compare
MMJJ_RS02045 -0.3 -0.7 molybdenum cofactor guanylyltransferase compare
MMJJ_RS01410 -0.3 -1.1 archaeal proteasome endopeptidase complex subunit beta compare
MMJJ_RS08185 -0.3 -2.6 ABC transporter permease compare
MMJJ_RS08870 -0.3 -0.5 2-isopropylmalate synthase compare
MMJJ_RS07585 -0.3 -2.2 DHH family phosphoesterase compare
MMJJ_RS09175 -0.3 -0.4 anthranilate synthase component I compare
MMJJ_RS07035 -0.3 -0.8 glycosyl transferase compare
MMJJ_RS03110 -0.3 -0.6 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS07815 -0.3 -2.4 2-oxoacid:acceptor oxidoreductase family protein compare
MMJJ_RS02235 -0.3 -2.3 DUF123 domain-containing protein compare
MMJJ_RS08805 -0.3 -1.6 deoxyuridine 5'-triphosphate nucleotidohydrolase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in attachment assay; planktonic sample experiments