Experiment set6IT096 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB no stress 48 hours

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2473 -4.5 -2.0 Major outer membrane lipoprotein I compare
Pf6N2E2_3303 -4.2 -2.9 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3782 -3.9 -3.8 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_2508 -3.5 -3.4 hypothetical protein compare
Pf6N2E2_2675 -3.3 -1.4 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_2574 -3.2 -2.2 Flagellar synthesis regulator FleN compare
Pf6N2E2_4369 -3.1 -2.2 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5178 -3.1 -3.0 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_4204 -3.0 -2.1 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_3658 -3.0 -7.3 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_5705 -2.8 -3.2 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_3661 -2.7 -3.2 hypothetical protein compare
Pf6N2E2_5527 -2.7 -2.6 Cold shock protein CspC compare
Pf6N2E2_5677 -2.7 -1.6 Carbon storage regulator compare
Pf6N2E2_2506 -2.5 -12.4 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_2313 -2.5 -3.7 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_4987 -2.5 -1.5 MaoC-like domain protein compare
Pf6N2E2_3300 -2.5 -2.6 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_3198 -2.4 -2.3 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_1056 -2.4 -1.3 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_5727 -2.3 -5.3 FIG00955360: hypothetical protein compare
Pf6N2E2_2513 -2.3 -4.4 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_5671 -2.3 -3.4 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_3839 -2.3 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5006 -2.3 -6.6 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2674 -2.3 -1.4 FIG00953856: hypothetical protein compare
Pf6N2E2_2218 -2.3 -3.6 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3659 -2.2 -5.0 Protein fixF compare
Pf6N2E2_2126 -2.2 -6.1 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_2127 -2.1 -3.8 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_5943 -2.1 -1.6 hypothetical protein compare
Pf6N2E2_4057 -2.1 -1.3 lipoprotein, putative compare
Pf6N2E2_649 -2.1 -2.8 General secretion pathway protein L compare
Pf6N2E2_2320 -2.0 -2.6 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_4153 -2.0 -1.3 Sensory box histidine kinase compare
Pf6N2E2_4352 -2.0 -3.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4918 -2.0 -2.5 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_2549 -2.0 -1.5 hypothetical protein compare
Pf6N2E2_5103 -2.0 -1.7 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_4187 -1.9 -3.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2507 -1.9 -4.3 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3252 -1.9 -4.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5069 -1.9 -4.6 putative Cytochrome bd2, subunit II compare
Pf6N2E2_2869 -1.9 -2.1 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_5243 -1.9 -2.2 hypothetical protein compare
Pf6N2E2_971 -1.9 -2.2 hypothetical protein compare
Pf6N2E2_3941 -1.9 -2.9 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2219 -1.9 -1.9 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_4206 -1.9 -1.7 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_3260 -1.9 -4.1 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_4733 -1.9 -1.6 hypothetical protein compare
Pf6N2E2_3607 -1.9 -7.2 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_4372 -1.8 -4.9 FIG00460773: hypothetical protein compare
Pf6N2E2_237 -1.8 -2.3 hypothetical protein compare
Pf6N2E2_5150 -1.8 -5.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5406 -1.8 -2.4 FIG00958224: hypothetical protein compare
Pf6N2E2_827 -1.8 -1.9 probable dioxygenase compare
Pf6N2E2_5156 -1.8 -2.4 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_2318 -1.8 -6.5 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2217 -1.8 -3.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2281 -1.8 -2.6 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_2510 -1.8 -4.0 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2714 -1.8 -2.3 transcriptional regulator, Crp/Fnr family compare
Pf6N2E2_5155 -1.8 -2.8 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2967 -1.7 -1.6 Cold shock protein CspA compare
Pf6N2E2_4889 -1.7 -4.8 Putative transport protein compare
Pf6N2E2_3253 -1.7 -4.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_2527 -1.7 -3.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_74 -1.7 -2.7 DedD protein compare
Pf6N2E2_2282 -1.7 -3.5 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_3257 -1.6 -2.6 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5068 -1.6 -7.2 putative Cytochrome bd2, subunit I compare
Pf6N2E2_4305 -1.6 -1.2 FIG00959590: hypothetical protein compare
Pf6N2E2_1502 -1.6 -2.1 Two-component system regulatory protein compare
Pf6N2E2_2022 -1.6 -5.8 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_5841 -1.6 -1.3 GlcG protein compare
Pf6N2E2_5430 -1.6 -7.1 Transglycosylase, Slt family compare
Pf6N2E2_1147 -1.6 -2.4 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_5316 -1.6 -1.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3841 -1.6 -4.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_2311 -1.6 -5.9 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_1305 -1.6 -3.0 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_5338 -1.6 -5.4 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3791 -1.5 -6.4 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_572 -1.5 -2.9 hypothetical protein compare
Pf6N2E2_5555 -1.5 -0.9 Cold shock protein CspA compare
Pf6N2E2_2474 -1.5 -6.3 ErfK/YbiS/YcfS/YnhG family protein compare
Pf6N2E2_127 -1.5 -1.8 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_3786 -1.5 -3.1 Twin-arginine translocation protein TatC compare
Pf6N2E2_4307 -1.5 -2.4 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_5001 -1.5 -2.0 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_2261 -1.5 -5.1 VacJ-like lipoprotein precursor compare
Pf6N2E2_2384 -1.5 -3.6 CmpX compare
Pf6N2E2_4584 -1.5 -2.2 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_4517 -1.4 -2.8 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Pf6N2E2_5816 -1.4 -1.8 Smr domain protein compare
Pf6N2E2_2010 -1.4 -1.5 hypothetical protein compare
Pf6N2E2_923 -1.3 -2.4 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_2111 -1.3 -1.9 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) compare
Pf6N2E2_2753 -1.3 -1.7 HtrA protease/chaperone protein compare
Pf6N2E2_70 -1.3 -2.9 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_6063 -1.3 -5.4 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_3842 -1.3 -2.6 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_5613 -1.3 -2.1 FIG00953674: hypothetical protein compare
Pf6N2E2_2827 -1.3 -1.0 hypothetical protein compare
Pf6N2E2_3537 -1.3 -3.2 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_1156 -1.3 -2.4 hypothetical protein compare
Pf6N2E2_1249 -1.3 -2.7 Transcriptional regulator, AraC family compare
Pf6N2E2_4803 -1.3 -1.2 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3258 -1.3 -3.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2310 -1.3 -5.6 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_919 -1.3 -1.6 FIG00954373: hypothetical protein compare
Pf6N2E2_1431 -1.3 -1.7 Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) compare
Pf6N2E2_2927 -1.3 -2.4 Putative signal peptide protein compare
Pf6N2E2_3792 -1.3 -3.7 Glucans biosynthesis protein G precursor compare
Pf6N2E2_3199 -1.2 -3.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_4612 -1.2 -3.3 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_1283 -1.2 -1.9 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5088 -1.2 -2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4416 -1.2 -1.6 Tyrosine recombinase XerC compare
Pf6N2E2_2682 -1.2 -2.3 Transcriptional regulator, LysR family compare
Pf6N2E2_5993 -1.2 -2.0 FIG00957412: hypothetical protein compare
Pf6N2E2_331 -1.2 -1.9 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_1247 -1.2 -2.4 hypothetical protein compare
Pf6N2E2_2552 -1.2 -3.0 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_3876 -1.2 -3.2 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_3373 -1.2 -1.6 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_1758 -1.2 -1.2 Transcriptional regulator, MarR family compare
Pf6N2E2_3221 -1.2 -2.2 FIG00352444: hypothetical protein compare
Pf6N2E2_3004 -1.2 -1.9 Prophage baseplate assembly protein V compare
Pf6N2E2_945 -1.2 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_2472 -1.2 -2.8 hypothetical protein compare
Pf6N2E2_2340 -1.2 -3.3 Transcriptional regulator, GntR family compare
Pf6N2E2_4594 -1.2 -2.2 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf6N2E2_4364 -1.2 -2.5 Protein YicC compare
Pf6N2E2_770 -1.2 -2.3 Ribosylnicotinamide kinase (EC 2.7.1.22) compare
Pf6N2E2_3908 -1.2 -4.3 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5337 -1.2 -3.0 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3460 -1.2 -1.3 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2317 -1.2 -2.9 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3270 -1.1 -2.8 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_5522 -1.1 -3.0 FIG001943: hypothetical protein YajQ compare
Pf6N2E2_1762 -1.1 -1.9 putative lipase compare
Pf6N2E2_3081 -1.1 -3.2 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf6N2E2_2561 -1.1 -1.1 FIG00955434: hypothetical protein compare
Pf6N2E2_4556 -1.1 -3.1 FIG00953078: hypothetical protein compare
Pf6N2E2_4159 -1.1 -2.1 Cytochrome c4 compare
Pf6N2E2_3039 -1.1 -3.8 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_338 -1.1 -1.6 Transcriptional regulator, AraC family compare
Pf6N2E2_3505 -1.1 -0.8 Translation initiation factor SUI1-related protein compare
Pf6N2E2_5339 -1.1 -3.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5678 -1.1 -5.4 hypothetical protein compare
Pf6N2E2_3641 -1.1 -2.4 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_4451 -1.1 -3.3 FIG139438: lipoprotein B compare
Pf6N2E2_3040 -1.1 -4.3 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_3003 -1.1 -1.3 Bacteriophage protein GP46 compare
Pf6N2E2_5261 -1.1 -0.9 FIG00956983: hypothetical protein compare
Pf6N2E2_1171 -1.1 -3.0 LysR family transcriptional regulator PA2877 compare
Pf6N2E2_3122 -1.1 -1.9 Chemotaxis signal transduction protein compare
Pf6N2E2_2830 -1.1 -3.1 Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) compare
Pf6N2E2_3847 -1.1 -2.6 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_6081 -1.1 -2.1 Transcriptional regulator, TetR family, in cluster with 2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent compare
Pf6N2E2_941 -1.0 -4.0 Probable transmembrane protein compare
Pf6N2E2_1444 -1.0 -2.5 Transcriptional regulator, LysR family compare
Pf6N2E2_1697 -1.0 -3.8 Alkanesulfonate monooxygenase (EC 1.14.14.5) compare
Pf6N2E2_4638 -1.0 -2.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_502 -1.0 -2.6 hypothetical protein compare
Pf6N2E2_5668 -1.0 -3.0 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_3942 -1.0 -4.1 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_5014 -1.0 -0.9 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4743 -1.0 -0.7 hypothetical protein compare
Pf6N2E2_1294 -1.0 -1.6 Carbon starvation protein A compare
Pf6N2E2_6064 -1.0 -3.2 2-methylaconitate isomerase compare
Pf6N2E2_6100 -1.0 -1.2 tRNA-Val-TAC compare
Pf6N2E2_1723 -1.0 -2.6 Transcriptional regulator, TetR family compare
Pf6N2E2_3611 -1.0 -1.0 HflC protein compare
Pf6N2E2_1534 -1.0 -1.0 Probable transmembrane protein compare
Pf6N2E2_319 -1.0 -2.5 DUF1850 domain-containing protein compare
Pf6N2E2_5536 -1.0 -1.3 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4453 -1.0 -6.4 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_5320 -1.0 -4.2 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_114 -1.0 -2.1 Polysaccharide biosynthesis protein compare
Pf6N2E2_5703 -1.0 -2.7 outer membrane protein H1 compare
Pf6N2E2_3725 -1.0 -1.3 FIG085779: Lipoprotein compare
Pf6N2E2_3009 -1.0 -1.8 Phage tail tube protein compare
Pf6N2E2_5986 -1.0 -1.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4205 -1.0 -2.0 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_5510 -1.0 -2.0 FIG00955324: hypothetical protein compare
Pf6N2E2_4479 -1.0 -1.9 FIG001590: Putative conserved exported protein precursor compare
Pf6N2E2_4751 -1.0 -2.4 response regulator compare
Pf6N2E2_37 -1.0 -2.3 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_5571 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_563 -0.9 -4.0 Serine transporter compare
Pf6N2E2_723 -0.9 -2.2 FIG138517: Putative lipid carrier protein compare
Pf6N2E2_4365 -0.9 -3.6 Ribonuclease PH (EC 2.7.7.56) compare
Pf6N2E2_2496 -0.9 -1.2 FIG00956575: hypothetical protein compare
Pf6N2E2_1403 -0.9 -1.7 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf6N2E2_5081 -0.9 -2.6 hypothetical protein compare
Pf6N2E2_5720 -0.9 -5.4 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_4075 -0.9 -2.5 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in lb experiments