Experiment set6IT096 for Pseudomonas fluorescens FW300-N2E3

Compare to:

Glycine nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_20695 -4.6 -6.9 O-succinylhomoserine sulfhydrylase compare
AO353_12365 -4.3 -2.9 phosphoribosyl-AMP cyclohydrolase compare
AO353_05115 -4.2 -10.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_08185 -4.1 -9.8 methionine biosynthesis protein MetW compare
AO353_12520 -4.0 -11.6 glutamate synthase compare
AO353_07220 -3.9 -8.0 anthranilate synthase compare
AO353_12085 -3.8 -7.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_20665 -3.8 -10.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_03500 -3.8 -13.0 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) conserved
AO353_07230 -3.7 -16.1 anthranilate synthase compare
AO353_12515 -3.7 -21.6 glutamate synthase compare
AO353_00310 -3.7 -9.2 transaldolase compare
AO353_14505 -3.7 -12.0 ketol-acid reductoisomerase compare
AO353_24130 -3.6 -3.5 hypothetical protein compare
AO353_12070 -3.6 -9.2 imidazoleglycerol-phosphate dehydratase compare
AO353_08180 -3.5 -13.9 homoserine O-acetyltransferase compare
AO353_20635 -3.5 -13.2 3-isopropylmalate dehydrogenase compare
AO353_22500 -3.5 -3.3 hypothetical protein compare
AO353_08685 -3.4 -8.8 N-acetylglutamate synthase compare
AO353_20620 -3.4 -7.8 isopropylmalate isomerase compare
AO353_13165 -3.4 -6.5 ATP phosphoribosyltransferase regulatory subunit compare
AO353_07215 -3.4 -8.5 anthranilate phosphoribosyltransferase compare
AO353_12075 -3.4 -9.2 imidazole glycerol phosphate synthase subunit HisH compare
AO353_20625 -3.3 -5.5 3-isopropylmalate dehydratase compare
AO353_03510 -3.3 -5.0 glycine cleavage system protein T compare
AO353_13110 -3.3 -7.8 putative transporter, required for glycine utilization (from data) conserved
AO353_12145 -3.3 -5.4 nitrogen regulation protein NR(I) compare
AO353_07210 -3.2 -6.8 indole-3-glycerol-phosphate synthase compare
AO353_12115 -3.1 -2.2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_08345 -3.1 -9.8 dihydroxy-acid dehydratase compare
AO353_05110 -3.1 -12.0 histidinol dehydrogenase compare
AO353_03490 -3.1 -9.3 Fis family transcriptional regulator conserved
AO353_19060 -3.1 -5.8 CysB family transcriptional regulator compare
AO353_16450 -3.1 -14.0 protein-PII uridylyltransferase compare
AO353_02070 -3.1 -8.9 prephenate dehydratase compare
AO353_08475 -3.1 -10.4 phosphoserine phosphatase compare
AO353_04155 -3.0 -12.1 ornithine carbamoyltransferase compare
AO353_09000 -3.0 -5.8 argininosuccinate lyase compare
AO353_09240 -3.0 -3.5 acetylglutamate kinase compare
AO353_12150 -3.0 -7.8 histidine kinase compare
AO353_12500 -2.9 -2.0 shikimate kinase compare
AO353_24340 -2.8 -2.9 TetR family transcriptional regulator compare
AO353_14495 -2.8 -11.8 acetolactate synthase 3 catalytic subunit compare
AO353_21625 -2.7 -3.2 Fe/S biogenesis protein NfuA compare
AO353_12090 -2.7 -2.9 imidazole glycerol phosphate synthase subunit HisF compare
AO353_08015 -2.7 -7.3 5,10-methylenetetrahydrofolate reductase compare
AO353_10025 -2.7 -14.7 pyruvate carboxylase subunit B compare
AO353_12360 -2.7 -10.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_06495 -2.6 -6.1 gamma-glutamyl phosphate reductase compare
AO353_03360 -2.6 -9.2 glucose-6-phosphate dehydrogenase compare
AO353_14115 -2.6 -7.4 gamma-glutamyl kinase compare
AO353_10705 -2.6 -4.9 tryptophan synthase subunit alpha compare
AO353_04105 -2.6 -9.6 argininosuccinate synthase compare
AO353_10670 -2.6 -7.1 shikimate dehydrogenase compare
AO353_02710 -2.5 -11.4 (p)ppGpp synthetase compare
AO353_02685 -2.5 -4.5 phosphoribosylglycinamide formyltransferase compare
AO353_15925 -2.5 -11.1 2-isopropylmalate synthase compare
AO353_07155 -2.5 -7.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_02040 -2.5 -3.7 integration host factor subunit beta compare
AO353_10035 -2.5 -9.8 LysR family transcriptional regulator compare
AO353_01375 -2.4 -6.9 phosphate acyltransferase compare
AO353_10030 -2.3 -11.2 pyruvate carboxylase subunit A compare
AO353_08165 -2.3 -3.8 pyrroline-5-carboxylate reductase compare
AO353_14500 -2.3 -7.5 acetolactate synthase 3 regulatory subunit compare
AO353_07645 -2.3 -2.7 sarcosine oxidase subunit gamma compare
AO353_08780 -2.3 -6.4 5-formyltetrahydrofolate cyclo-ligase compare
AO353_09915 -2.3 -7.9 long-chain acyl-CoA thioester hydrolase compare
AO353_07525 -2.3 -13.7 biotin synthase compare
AO353_03495 -2.3 -5.1 glycine cleavage system protein H conserved
AO353_20540 -2.2 -7.7 aromatic amino acid aminotransferase compare
AO353_03580 -2.2 -4.1 ATP-dependent DNA helicase RuvB compare
AO353_02610 -2.2 -6.8 adenosylcobinamide kinase compare
AO353_11770 -2.2 -2.1 molecular chaperone Hsp33 compare
AO353_21655 -2.1 -3.2 cobalamin biosynthesis protein CobW compare
AO353_13610 -2.1 -4.7 precorrin isomerase compare
AO353_14420 -2.1 -4.0 molecular chaperone DnaK compare
AO353_09140 -2.1 -9.0 XRE family transcriptional regulator compare
AO353_09250 -2.1 -3.7 exodeoxyribonuclease III compare
AO353_00825 -2.1 -4.3 porin compare
AO353_21665 -2.0 -5.5 magnesium chelatase compare
AO353_02615 -2.0 -8.2 cobyric acid synthase compare
AO353_10710 -2.0 -5.3 tryptophan synthase subunit beta compare
AO353_14370 -2.0 -6.9 glucose-6-phosphate isomerase compare
AO353_06320 -1.9 -4.5 AsnC family transcriptional regulator compare
AO353_05690 -1.9 -3.4 SsrA-binding protein compare
AO353_22800 -1.9 -3.0 sulfite reductase compare
AO353_10455 -1.9 -2.2 tRNA modification GTPase MnmE compare
AO353_07355 -1.9 -6.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_13605 -1.9 -9.4 oxidoreductase compare
AO353_03020 -1.8 -7.0 arginine N-succinyltransferase compare
AO353_05125 -1.8 -4.6 BolA family transcriptional regulator compare
AO353_02720 -1.8 -5.9 cysteine synthase compare
AO353_14400 -1.8 -3.5 Fis family transcriptional regulator compare
AO353_03420 -1.7 -5.0 phosphogluconate dehydratase compare
AO353_09135 -1.7 -2.8 cytochrome C compare
AO353_04355 -1.7 -2.8 homoserine dehydrogenase compare
AO353_12105 -1.7 -6.2 peptidase S41 compare
AO353_20175 -1.7 -3.4 ATP-dependent Clp protease proteolytic subunit compare
AO353_07105 -1.6 -1.7 biotin--protein ligase compare
AO353_13420 -1.6 -1.7 hypothetical protein compare
AO353_02625 -1.6 -7.6 cobalamin biosynthesis protein CobD compare
AO353_19360 -1.6 -3.1 peroxiredoxin compare
AO353_09890 -1.6 -5.1 phosphate ABC transporter ATP-binding protein compare
AO353_13200 -1.6 -9.2 exoribonuclease R compare
AO353_08045 -1.6 -9.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_06155 -1.5 -6.9 copper-transporting ATPase compare
AO353_10495 -1.5 -3.9 serine hydroxymethyltransferase compare
AO353_15730 -1.5 -3.4 hypothetical protein compare
AO353_13620 -1.5 -7.8 precorrin-3B C17-methyltransferase compare
AO353_05105 -1.5 -7.6 histidinol-phosphate aminotransferase compare
AO353_03245 -1.5 -5.8 permease DsdX compare
AO353_06045 -1.5 -6.4 exodeoxyribonuclease V subunit beta compare
AO353_02600 -1.5 -2.5 alpha-ribazole phosphatase compare
AO353_00495 -1.5 -2.5 DNA topoisomerase I compare
AO353_08885 -1.5 -9.8 polyphosphate kinase compare
AO353_14940 -1.5 -3.7 malate:quinone oxidoreductase compare
AO353_21615 -1.5 -8.7 methionine synthase compare
AO353_14775 -1.5 -5.5 hypothetical protein compare
AO353_06050 -1.4 -6.3 exodeoxyribonuclease V subunit gamma compare
AO353_03585 -1.4 -3.0 ATP-dependent DNA helicase RuvA compare
AO353_08465 -1.4 -10.0 phosphoenolpyruvate-protein phosphotransferase compare
AO353_15490 -1.4 -2.2 hypothetical protein compare
AO353_09070 -1.4 -8.7 ammonia channel protein compare
AO353_13600 -1.4 -3.1 precorrin-6Y C5,15-methyltransferase compare
AO353_06040 -1.4 -3.2 exodeoxyribonuclease V subunit alpha compare
AO353_05420 -1.4 -2.0 peptide chain release factor 3 compare
AO353_07505 -1.4 -6.4 dethiobiotin synthetase compare
AO353_02250 -1.4 -2.9 chorismate synthase compare
AO353_29280 -1.4 -2.4 hypothetical protein compare
AO353_09285 -1.4 -6.9 reactive intermediate/imine deaminase compare
AO353_13615 -1.3 -9.2 precorrin-2 C20-methyltransferase compare
AO353_19295 -1.3 -1.6 hypothetical protein compare
AO353_06720 -1.3 -2.3 NrdR family transcriptional regulator compare
AO353_28945 -1.3 -2.7 potassium-transporting ATPase subunit B compare
AO353_04175 -1.3 -4.1 glycerol uptake facilitator GlpF compare
AO353_07465 -1.3 -2.8 addiction module toxin RelE compare
AO353_17030 -1.3 -7.8 serine hydrolase conserved
AO353_02810 -1.3 -5.5 histidine kinase compare
AO353_24625 -1.3 -3.0 hypothetical protein compare
AO353_07510 -1.3 -6.2 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_02635 -1.3 -5.6 cobyrinic acid a,c-diamide synthase compare
AO353_02595 -1.3 -1.8 cobalamin synthase compare
AO353_21660 -1.2 -7.6 cobalamin biosynthesis protein CobN compare
AO353_15250 -1.2 -3.0 cytochrome B compare
AO353_02000 -1.2 -2.6 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_09050 -1.2 -3.1 recombinase XerC compare
AO353_08130 -1.2 -2.5 uracil phosphoribosyltransferase compare
AO353_07315 -1.2 -1.8 rRNA methyltransferase compare
AO353_02640 -1.2 -2.0 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_27650 -1.2 -3.4 cell division protein FtsK compare
AO353_01550 -1.2 -3.6 hypothetical protein compare
AO353_26165 -1.2 -3.0 hypothetical protein compare
AO353_01190 -1.2 -1.6 hypothetical protein compare
AO353_20660 -1.2 -3.1 pseudouridine synthase compare
AO353_05135 -1.2 -5.5 toluene tolerance protein compare
AO353_03415 -1.2 -4.1 glucokinase compare
AO353_04565 -1.2 -4.6 nucleoid-associated protein compare
AO353_19145 -1.1 -3.5 protease HtpX compare
AO353_07520 -1.1 -6.9 8-amino-7-oxononanoate synthase compare
AO353_05080 -1.1 -6.4 sulfate adenylyltransferase compare
AO353_00515 -1.1 -3.0 hypothetical protein compare
AO353_12420 -1.1 -3.2 predicted FeS cluster maintenance protein (from data) compare
AO353_02300 -1.1 -2.3 MarR family transcriptional regulator compare
AO353_03715 -1.1 -2.2 H-NS histone compare
AO353_13640 -1.1 -3.6 histidine kinase compare
AO353_00330 -1.1 -6.2 hypothetical protein compare
AO353_26840 -1.1 -3.2 RND transporter compare
AO353_27525 -1.1 -3.2 AraC family transcriptional regulator compare
AO353_02605 -1.1 -3.7 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
AO353_13530 -1.1 -2.9 ABC transporter ATP-binding protein compare
AO353_13225 -1.1 -2.5 50S ribosomal protein L9 compare
AO353_09885 -1.1 -1.5 transcriptional regulator PhoU compare
AO353_23400 -1.0 -2.0 hypothetical protein compare
AO353_09440 -1.0 -1.3 type VI secretion protein compare
AO353_05075 -1.0 -5.6 adenylylsulfate kinase compare
AO353_03590 -1.0 -2.8 crossover junction endodeoxyribonuclease RuvC compare
AO353_21630 -1.0 -1.5 precorrin-4 C11-methyltransferase compare
AO353_16940 -1.0 -3.8 deoxycytidine triphosphate deaminase compare
AO353_14595 -1.0 -5.3 carbonate dehydratase compare
AO353_05145 -1.0 -4.1 ABC transporter permease compare
AO353_01035 -1.0 -2.9 hypothetical protein compare
AO353_23440 -1.0 -2.5 hypothetical protein compare
AO353_03505 -1.0 -4.7 serine dehydratase compare
AO353_14220 -1.0 -1.4 ribosomal large subunit pseudouridine synthase D compare
AO353_04190 -1.0 -1.8 glycerol-3-phosphate dehydrogenase compare
AO353_10040 -1.0 -5.0 transcriptional regulator compare
AO353_14395 -1.0 -2.6 poly(A) polymerase compare
AO353_22920 -1.0 -3.5 GntR family transcriptional regulator compare
AO353_05140 -0.9 -5.1 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_08980 -0.9 -2.2 heme biosynthesis operon protein HemX compare
AO353_26550 -0.9 -1.1 hypothetical protein compare
AO353_04500 -0.9 -1.3 DNA repair protein RecO compare
AO353_01780 -0.9 -5.2 heat-shock protein Hsp90 compare
AO353_09905 -0.9 -4.6 phosphate-binding protein compare
AO353_15445 -0.9 -2.5 disulfide bond formation protein B compare
AO353_20815 -0.9 -2.4 LacI family transcriptional regulator compare
AO353_13115 -0.9 -5.5 epoxyqueuosine reductase compare
AO353_00185 -0.9 -1.3 phage tail protein compare
AO353_13220 -0.9 -3.6 hypothetical protein compare
AO353_26080 -0.9 -2.5 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source Glycine in Pseudomonas fluorescens FW300-N2E3

For nitrogen source Glycine across organisms