Experiment set6IT095 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB no stress 24 hours

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3611 -3.8 -2.6 HflC protein compare
Pf6N2E2_2003 -3.5 -3.3 hypothetical protein compare
Pf6N2E2_3782 -3.3 -3.9 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3303 -3.2 -4.4 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3373 -3.2 -2.5 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_3658 -3.0 -6.9 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3659 -3.0 -6.2 Protein fixF compare
Pf6N2E2_2420 -2.8 -2.7 hypothetical protein compare
Pf6N2E2_5069 -2.8 -5.9 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3252 -2.7 -7.1 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5555 -2.6 -1.6 Cold shock protein CspA compare
Pf6N2E2_2219 -2.6 -1.8 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_5727 -2.6 -6.9 FIG00955360: hypothetical protein compare
Pf6N2E2_3661 -2.6 -3.5 hypothetical protein compare
Pf6N2E2_3198 -2.5 -2.4 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_5843 -2.5 -2.9 hypothetical protein compare
Pf6N2E2_2507 -2.5 -5.6 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_288 -2.4 -2.3 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_5571 -2.4 -2.8 hypothetical protein compare
Pf6N2E2_2312 -2.4 -2.5 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_664 -2.4 -1.4 Acetoin catabolism protein X compare
Pf6N2E2_1056 -2.3 -1.5 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2181 -2.3 -2.3 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_4369 -2.3 -2.7 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5527 -2.2 -2.5 Cold shock protein CspC compare
Pf6N2E2_3842 -2.2 -4.4 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_4803 -2.2 -2.0 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_5068 -2.1 -10.7 putative Cytochrome bd2, subunit I compare
Pf6N2E2_2317 -2.1 -4.0 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2218 -2.1 -3.6 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5316 -2.0 -2.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2506 -2.0 -10.3 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_4187 -2.0 -3.6 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3027 -2.0 -1.7 Baseplate assembly protein V compare
Pf6N2E2_3666 -2.0 -3.1 InaA protein compare
Pf6N2E2_5242 -2.0 -2.3 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3461 -2.0 -1.8 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5103 -1.9 -1.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_3261 -1.9 -4.8 hypothetical protein compare
Pf6N2E2_3841 -1.8 -4.2 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_423 -1.8 -1.7 Putative phosphatase YfbT compare
Pf6N2E2_1116 -1.8 -2.0 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_2189 -1.8 -4.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_5178 -1.8 -2.3 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5156 -1.8 -2.0 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_5671 -1.7 -3.0 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_2217 -1.7 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_5338 -1.7 -6.4 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5001 -1.7 -2.0 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_4204 -1.7 -1.4 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_4987 -1.6 -1.4 MaoC-like domain protein compare
Pf6N2E2_2127 -1.6 -3.7 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3791 -1.6 -7.1 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_919 -1.6 -1.7 FIG00954373: hypothetical protein compare
Pf6N2E2_3839 -1.6 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_2282 -1.6 -3.2 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_384 -1.5 -2.4 Glycine cleavage system transcriptional activator compare
Pf6N2E2_4372 -1.5 -4.3 FIG00460773: hypothetical protein compare
Pf6N2E2_2126 -1.5 -4.7 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_746 -1.5 -1.3 FIG00958097: hypothetical protein compare
Pf6N2E2_5430 -1.5 -6.1 Transglycosylase, Slt family compare
Pf6N2E2_2514 -1.5 -3.2 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_2313 -1.5 -2.4 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_6090 -1.5 -1.9 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_3940 -1.5 -5.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_3171 -1.5 -1.4 hypothetical protein compare
Pf6N2E2_3199 -1.5 -4.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_3253 -1.4 -4.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3264 -1.4 -2.1 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_4451 -1.4 -4.4 FIG139438: lipoprotein B compare
Pf6N2E2_156 -1.4 -1.8 Carbon storage regulator compare
Pf6N2E2_2264 -1.4 -3.0 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_3656 -1.4 -4.5 Probable transcription regulator Mig-14 compare
Pf6N2E2_2510 -1.3 -3.1 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_3792 -1.3 -4.8 Glucans biosynthesis protein G precursor compare
Pf6N2E2_3251 -1.3 -5.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_5993 -1.3 -2.5 FIG00957412: hypothetical protein compare
Pf6N2E2_4159 -1.3 -2.6 Cytochrome c4 compare
Pf6N2E2_5155 -1.3 -2.2 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2367 -1.3 -1.6 hypothetical protein compare
Pf6N2E2_3257 -1.3 -2.2 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_2340 -1.3 -3.5 Transcriptional regulator, GntR family compare
Pf6N2E2_4661 -1.2 -2.8 KluA regulatory protein compare
Pf6N2E2_5406 -1.2 -2.0 FIG00958224: hypothetical protein compare
Pf6N2E2_2384 -1.2 -3.1 CmpX compare
Pf6N2E2_1673 -1.2 -2.4 Transcriptional regulator, TetR family compare
Pf6N2E2_5425 -1.2 -1.4 hypothetical protein compare
Pf6N2E2_1834 -1.2 -1.3 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_2320 -1.2 -2.4 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_70 -1.2 -2.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3610 -1.2 -3.6 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_2176 -1.2 -0.9 Amidases related to nicotinamidase compare
Pf6N2E2_2508 -1.2 -2.4 hypothetical protein compare
Pf6N2E2_3663 -1.2 -4.7 Glycosyl transferase compare
Pf6N2E2_2681 -1.2 -2.5 3-phosphoglycerate kinase compare
Pf6N2E2_3529 -1.2 -1.7 Toxin A compare
Pf6N2E2_4272 -1.2 -2.9 putative membrane protein compare
Pf6N2E2_3908 -1.2 -4.1 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3835 -1.2 -2.1 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_737 -1.2 -1.8 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_1074 -1.2 -2.2 FIG00953356: hypothetical protein compare
Pf6N2E2_4279 -1.2 -6.0 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_3941 -1.2 -2.4 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_4640 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_1876 -1.1 -2.1 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf6N2E2_445 -1.1 -3.6 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_1705 -1.1 -1.3 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_2546 -1.1 -2.6 Carbon storage regulator compare
Pf6N2E2_2488 -1.1 -1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1352 -1.1 -2.0 Cation transport ATPase compare
Pf6N2E2_5520 -1.1 -3.9 Sensory box histidine kinase compare
Pf6N2E2_4928 -1.1 -0.8 Permeases of the major facilitator superfamily compare
Pf6N2E2_3325 -1.1 -1.8 ABC transporter, ATP-binding protein compare
Pf6N2E2_4969 -1.1 -1.1 hypothetical protein compare
Pf6N2E2_4146 -1.1 -1.5 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_1009 -1.1 -1.5 Inositol transport system permease protein compare
Pf6N2E2_5508 -1.1 -1.4 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_5339 -1.1 -3.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3607 -1.1 -4.6 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2188 -1.1 -2.8 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf6N2E2_5766 -1.1 -1.2 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_1169 -1.1 -1.4 TnpR protein compare
Pf6N2E2_1808 -1.1 -2.8 Transcriptional regulator compare
Pf6N2E2_1784 -1.0 -2.0 Methyl-accepting chemotaxis protein compare
Pf6N2E2_3655 -1.0 -6.2 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_4638 -1.0 -1.9 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_1211 -1.0 -1.1 Lactoylglutathione lyase compare
Pf6N2E2_1983 -1.0 -2.2 hypothetical protein compare
Pf6N2E2_3568 -1.0 -1.7 Unsaturated fatty acid biosythesis repressor FabR, TetR family compare
Pf6N2E2_5337 -1.0 -2.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_453 -1.0 -2.2 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_3505 -1.0 -0.8 Translation initiation factor SUI1-related protein compare
Pf6N2E2_1966 -1.0 -1.9 SAM-dependent methyltransferases compare
Pf6N2E2_4889 -1.0 -2.9 Putative transport protein compare
Pf6N2E2_5081 -1.0 -2.6 hypothetical protein compare
Pf6N2E2_302 -1.0 -2.8 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_831 -1.0 -2.1 Ketoacyl reductase hetN (EC 1.3.1.-) compare
Pf6N2E2_5150 -1.0 -3.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5705 -1.0 -1.1 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_3260 -1.0 -3.0 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2503 -1.0 -0.6 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_2292 -1.0 -1.8 Universal stress protein family COG0589 compare
Pf6N2E2_4467 -1.0 -2.2 hypothetical protein compare
Pf6N2E2_4307 -1.0 -2.0 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_3062 -1.0 -2.0 Membrane-associated zinc metalloprotease compare
Pf6N2E2_1081 -1.0 -1.3 probable membrane protein YPO3302 compare
Pf6N2E2_2274 -1.0 -3.0 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2870 -1.0 -1.9 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_4908 -0.9 -4.3 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2318 -0.9 -4.2 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_1838 -0.9 -1.6 6-hexanolactone hydrolase compare
Pf6N2E2_5623 -0.9 -1.5 YciL protein compare
Pf6N2E2_2045 -0.9 -2.2 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) compare
Pf6N2E2_6047 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_3541 -0.9 -2.8 Putative multicopper oxidases compare
Pf6N2E2_5329 -0.9 -2.5 Alpha/beta hydrolase compare
Pf6N2E2_1566 -0.9 -2.0 FIG00960770: hypothetical protein compare
Pf6N2E2_37 -0.9 -1.8 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_2753 -0.9 -1.6 HtrA protease/chaperone protein compare
Pf6N2E2_2880 -0.9 -1.9 FIG00959696: hypothetical protein compare
Pf6N2E2_2311 -0.9 -3.8 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_4691 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_623 -0.9 -1.0 FIG00954674: hypothetical protein compare
Pf6N2E2_1805 -0.9 -2.2 Multidrug resistance protein B compare
Pf6N2E2_2306 -0.9 -2.1 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2476 -0.9 -1.8 Arylesterase precursor (EC 3.1.1.2) compare
Pf6N2E2_1545 -0.9 -2.1 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_2063 -0.9 -1.7 Predicted cobalt transporter CbtA compare
Pf6N2E2_3778 -0.9 -1.8 FIG00954300: hypothetical protein compare
Pf6N2E2_2527 -0.9 -2.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3786 -0.9 -2.1 Twin-arginine translocation protein TatC compare
Pf6N2E2_1893 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_6095 -0.9 -1.2 tRNA-Asn-GTT compare
Pf6N2E2_5596 -0.9 -2.8 Electron transport complex protein RnfG compare
Pf6N2E2_5804 -0.9 -2.3 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase compare
Pf6N2E2_4153 -0.9 -0.8 Sensory box histidine kinase compare
Pf6N2E2_2825 -0.8 -2.0 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_4048 -0.8 -3.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf6N2E2_4918 -0.8 -1.5 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_5841 -0.8 -1.0 GlcG protein compare
Pf6N2E2_5902 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_2472 -0.8 -2.7 hypothetical protein compare
Pf6N2E2_2869 -0.8 -1.0 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_692 -0.8 -2.5 Glucarate dehydratase (EC 4.2.1.40) compare
Pf6N2E2_3726 -0.8 -2.9 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like compare
Pf6N2E2_4546 -0.8 -2.0 hypothetical protein compare
Pf6N2E2_5320 -0.8 -3.5 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_2310 -0.8 -4.5 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_1443 -0.8 -1.9 putative aldo/keto reductase compare
Pf6N2E2_84 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_2448 -0.8 -2.0 Thiopurine S-methyltransferase (EC 2.1.1.67) compare
Pf6N2E2_1423 -0.8 -2.9 Gamma-aminobutyrate permease compare
Pf6N2E2_2509 -0.8 -0.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_1626 -0.8 -3.3 Putative ATP-binding component of a transport system compare
Pf6N2E2_3847 -0.8 -1.6 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_5340 -0.8 -2.3 Stringent starvation protein A compare
Pf6N2E2_1743 -0.8 -1.6 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_2281 -0.8 -1.2 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_3603 -0.8 -3.2 FIG003573: hypothetical protein compare
Pf6N2E2_1469 -0.8 -2.1 NAD-dependent formate dehydrogenase gamma subunit compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in lb experiments