Experiment set6IT095 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB no stress 24 hours

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_3475 +1.3 2.1 hypothetical protein compare
Pf6N2E2_1288 +1.3 2.2 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_719 +1.2 2.2 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_1596 +1.2 1.9 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_4963 +1.2 2.3 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_1824 +1.1 2.7 hypothetical protein compare
Pf6N2E2_1091 +1.1 2.6 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) compare
Pf6N2E2_1450 +1.1 2.5 FIG00960438: hypothetical protein compare
Pf6N2E2_342 +1.1 1.7 DNA-binding response regulator compare
Pf6N2E2_1339 +1.1 3.2 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_1886 +1.1 1.3 hypothetical protein compare
Pf6N2E2_3870 +1.1 2.4 hypothetical protein compare
Pf6N2E2_82 +1.1 3.0 hypothetical protein compare
Pf6N2E2_3702 +1.0 2.6 FIG00953907: hypothetical protein compare
Pf6N2E2_1034 +1.0 1.9 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_1441 +1.0 2.2 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_1654 +0.9 3.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_4263 +0.9 3.0 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf6N2E2_4367 +0.9 2.2 hypothetical protein compare
Pf6N2E2_469 +0.9 1.3 lipoprotein, putative compare
Pf6N2E2_2055 +0.9 3.1 StbE replicon stabilization toxin compare
Pf6N2E2_1917 +0.9 1.9 hypothetical protein compare
Pf6N2E2_6087 +0.9 1.8 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_2857 +0.9 2.9 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf6N2E2_3240 +0.9 1.5 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_3108 +0.9 2.7 FIG00953405: hypothetical protein compare
Pf6N2E2_4624 +0.9 1.0 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_3021 +0.8 1.3 hypothetical protein compare
Pf6N2E2_1994 +0.8 2.0 putative lipoprotein compare
Pf6N2E2_420 +0.8 1.6 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_552 +0.8 1.4 Uncharacterized protein ImpF compare
Pf6N2E2_1551 +0.8 2.9 Transcriptional regulator compare
Pf6N2E2_1040 +0.8 1.3 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_6018 +0.8 2.4 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_5013 +0.8 1.8 Putative membrane protein compare
Pf6N2E2_2002 +0.8 2.3 hypothetical protein compare
Pf6N2E2_2083 +0.8 2.5 hypothetical protein compare
Pf6N2E2_5677 +0.8 1.3 Carbon storage regulator compare
Pf6N2E2_687 +0.8 1.6 4-oxalocrotonate tautomerase (EC 5.3.2.-) compare
Pf6N2E2_1405 +0.8 2.0 Nitrous oxide reductase maturation protein NosF (ATPase) compare
Pf6N2E2_1179 +0.8 2.4 hypothetical protein compare
Pf6N2E2_3003 +0.7 2.2 Bacteriophage protein GP46 compare
Pf6N2E2_5160 +0.7 1.4 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_1981 +0.7 3.1 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_2309 +0.7 1.3 hypothetical protein compare
Pf6N2E2_659 +0.7 1.1 Transcriptional regulatory protein ompR compare
Pf6N2E2_3237 +0.7 1.7 hypothetical protein compare
Pf6N2E2_434 +0.7 0.9 hypothetical protein compare
Pf6N2E2_2496 +0.7 1.5 FIG00956575: hypothetical protein compare
Pf6N2E2_939 +0.7 1.9 hypothetical protein compare
Pf6N2E2_2285 +0.7 0.9 FIG00954079: hypothetical protein compare
Pf6N2E2_1504 +0.7 1.3 putative 2-pyrone-4,6-dicarboxylic acid hydrolase compare
Pf6N2E2_2081 +0.7 1.9 putative exported protein compare
Pf6N2E2_1575 +0.7 3.3 FIG00967398: hypothetical protein compare
Pf6N2E2_3947 +0.7 1.1 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_1920 +0.7 2.1 Rubredoxin compare
Pf6N2E2_4747 +0.7 1.8 Transmembrane sensor compare
Pf6N2E2_4731 +0.7 3.3 FIG00955037: hypothetical protein compare
Pf6N2E2_2855 +0.7 1.9 DGPFAETKE compare
Pf6N2E2_703 +0.7 2.3 Cytochrome c55X precursor NirC compare
Pf6N2E2_161 +0.7 1.5 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Pf6N2E2_3255 +0.6 2.5 YrbA protein compare
Pf6N2E2_3271 +0.6 1.1 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_1347 +0.6 1.5 Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) compare
Pf6N2E2_2440 +0.6 1.0 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_555 +0.6 1.8 Uncharacterized protein ImpB compare
Pf6N2E2_945 +0.6 1.3 Transcriptional regulator, TetR family compare
Pf6N2E2_2262 +0.6 1.8 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf6N2E2_1885 +0.6 1.4 Transcriptional regulator, AraC family compare
Pf6N2E2_5676 +0.6 2.2 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_5712 +0.6 1.4 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf6N2E2_3096 +0.6 1.0 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_5130 +0.6 1.2 hypothetical protein compare
Pf6N2E2_3024 +0.6 1.6 Phage tail fibers compare
Pf6N2E2_4917 +0.6 1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5291 +0.6 5.3 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_1472 +0.6 1.7 Cytochrome b561 compare
Pf6N2E2_3698 +0.6 1.8 Nicotinamidase family protein YcaC compare
Pf6N2E2_1781 +0.6 2.6 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Pf6N2E2_768 +0.6 1.5 Fap amyloid fibril minor component compare
Pf6N2E2_5842 +0.6 2.1 Transcriptional regulator, TetR family compare
Pf6N2E2_1313 +0.6 1.9 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-) compare
Pf6N2E2_4342 +0.6 1.9 Protein phosphatase ImpM compare
Pf6N2E2_234 +0.6 1.5 FIG00454312: hypothetical protein compare
Pf6N2E2_1522 +0.6 2.0 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf6N2E2_440 +0.6 1.0 FIG00954920: hypothetical protein compare
Pf6N2E2_2675 +0.6 0.6 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_5468 +0.5 1.7 Nudix hydrolase family protein PA3470 compare
Pf6N2E2_959 +0.5 1.7 putative membrane protein compare
Pf6N2E2_2561 +0.5 1.0 FIG00955434: hypothetical protein compare
Pf6N2E2_3219 +0.5 1.9 hypothetical protein compare
Pf6N2E2_4113 +0.5 1.5 Redox-sensing transcriptional regulator QorR compare
Pf6N2E2_2350 +0.5 1.8 Oxygen-regulated invasion protein OrgB compare
Pf6N2E2_236 +0.5 2.0 putative transcriptional regulator protein compare
Pf6N2E2_2139 +0.5 1.3 Paraquat-inducible protein A compare
Pf6N2E2_2103 +0.5 1.4 hypothetical protein compare
Pf6N2E2_4050 +0.5 1.0 FIG00953718: hypothetical protein compare
Pf6N2E2_4534 +0.5 1.6 hypothetical protein compare
Pf6N2E2_1092 +0.5 1.5 Probable vanillate O-demethylase oxygenase subunit oxidoreductase protein (EC 1.14.13.-) compare
Pf6N2E2_2986 +0.5 1.7 Transcriptional regulator, LuxR family compare
Pf6N2E2_5872 +0.5 3.5 Sensor histidine kinase/response regulator compare
Pf6N2E2_1894 +0.5 2.1 hypothetical protein compare
Pf6N2E2_1236 +0.5 1.1 Transcriptional regulator, LysR family compare
Pf6N2E2_5739 +0.5 0.7 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_2062 +0.5 1.1 FIG00955561: hypothetical protein compare
Pf6N2E2_2502 +0.5 1.5 O-antigen acetylase compare
Pf6N2E2_1027 +0.5 1.1 Cysteine dioxygenase (EC 1.13.11.20) compare
Pf6N2E2_2674 +0.5 0.7 FIG00953856: hypothetical protein compare
Pf6N2E2_3055 +0.5 1.5 Ribonuclease HII (EC 3.1.26.4) compare
Pf6N2E2_3074 +0.5 0.8 FIG00960973: hypothetical protein compare
Pf6N2E2_367 +0.5 1.6 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_2223 +0.5 1.2 hypothetical protein compare
Pf6N2E2_2235 +0.5 2.1 Xanthine permease compare
Pf6N2E2_5755 +0.5 1.8 FIG00956435: hypothetical protein compare
Pf6N2E2_3737 +0.5 0.9 General secretion pathway protein M compare
Pf6N2E2_1548 +0.5 1.4 Lactoylglutathione lyase compare
Pf6N2E2_1974 +0.5 2.2 FIG141694: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_4579 +0.5 0.6 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_1972 +0.5 1.0 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_1792 +0.5 1.1 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf6N2E2_2033 +0.5 2.2 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf6N2E2_1740 +0.5 1.7 Transketolase, C-terminal section (EC 2.2.1.1) compare
Pf6N2E2_4938 +0.5 2.8 FIG00956113: hypothetical protein compare
Pf6N2E2_128 +0.5 1.7 AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system compare
Pf6N2E2_460 +0.5 1.3 Glycerate kinase (EC 2.7.1.31) compare
Pf6N2E2_2752 +0.5 2.7 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_2776 +0.5 1.8 Urea carboxylase-related ABC transporter, permease protein compare
Pf6N2E2_3270 +0.5 1.5 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_5703 +0.5 1.5 outer membrane protein H1 compare
Pf6N2E2_1549 +0.5 2.0 Transcriptional regulator, LysR family compare
Pf6N2E2_290 +0.5 1.6 Cold shock protein CspD compare
Pf6N2E2_563 +0.5 2.3 Serine transporter compare
Pf6N2E2_6023 +0.5 1.9 Putative cytoplasmic protein compare
Pf6N2E2_595 +0.5 1.2 Arsenical resistance operon repressor compare
Pf6N2E2_6007 +0.5 1.7 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_2965 +0.5 1.5 FIG00955308: hypothetical protein compare
Pf6N2E2_2204 +0.5 2.6 serine/threonine protein kinase compare
Pf6N2E2_5505 +0.5 1.3 hypothetical protein compare
Pf6N2E2_3715 +0.5 2.5 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase / (3R)-hydroxymyristoyl-[ACP] dehydratase (EC 4.2.1.-) compare
Pf6N2E2_961 +0.5 1.1 FIG00954712: hypothetical protein compare
Pf6N2E2_2905 +0.5 1.9 CoA transferase, CAIB/BAIF family compare
Pf6N2E2_280 +0.5 1.5 hypothetical protein compare
Pf6N2E2_1765 +0.5 1.8 hypothetical protein compare
Pf6N2E2_1774 +0.5 0.9 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_2967 +0.5 0.7 Cold shock protein CspA compare
Pf6N2E2_5262 +0.5 0.9 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_5052 +0.5 1.1 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_4694 +0.5 1.9 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_201 +0.5 1.7 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) compare
Pf6N2E2_4662 +0.5 1.7 hypothetical protein compare
Pf6N2E2_4077 +0.4 1.0 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_909 +0.4 1.9 VrlR-like protein compare
Pf6N2E2_1328 +0.4 1.2 Methyl-accepting chemotaxis protein compare
Pf6N2E2_315 +0.4 1.2 probable transmembrane protein compare
Pf6N2E2_4114 +0.4 1.9 hypothetical protein compare
Pf6N2E2_865 +0.4 0.6 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_2314 +0.4 1.0 VapB protein (antitoxin to VapC) compare
Pf6N2E2_988 +0.4 1.4 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) compare
Pf6N2E2_4422 +0.4 1.2 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf6N2E2_868 +0.4 1.1 Transcriptional regulator, HxlR family compare
Pf6N2E2_3563 +0.4 1.3 FMN-dependent NADH-azoreductase compare
Pf6N2E2_5906 +0.4 0.4 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_1435 +0.4 1.1 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase compare
Pf6N2E2_1178 +0.4 1.4 3-oxoacyl-(acyl-carrier-protein) synthase compare
Pf6N2E2_4618 +0.4 1.6 Chemotaxis signal transduction protein compare
Pf6N2E2_847 +0.4 1.2 Phosphoribosyl transferase domain protein compare
Pf6N2E2_6099 +0.4 0.6 tRNA-Glu-TTC compare
Pf6N2E2_1252 +0.4 2.5 Catalase (EC 1.11.1.6) compare
Pf6N2E2_1213 +0.4 1.3 hypothetical protein compare
Pf6N2E2_4706 +0.4 1.1 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_5576 +0.4 1.2 Cys-tRNA(Pro) deacylase YbaK compare
Pf6N2E2_350 +0.4 0.7 Gfa-like protein compare
Pf6N2E2_641 +0.4 1.9 Extracytoplasmic function (ECF) sigma factor VreI compare
Pf6N2E2_775 +0.4 1.3 FIG00955061: hypothetical protein compare
Pf6N2E2_5611 +0.4 2.1 SAM-dependent methyltransferases compare
Pf6N2E2_2572 +0.4 1.1 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_4744 +0.4 2.1 putative iron-regulated membrane protein compare
Pf6N2E2_127 +0.4 0.9 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_5943 +0.4 0.6 hypothetical protein compare
Pf6N2E2_1065 +0.4 1.4 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_254 +0.4 1.3 Transcriptional regulator, LysR family compare
Pf6N2E2_4804 +0.4 1.7 ApaG protein compare
Pf6N2E2_204 +0.4 0.7 hypothetical protein compare
Pf6N2E2_1281 +0.4 0.9 ATPase involved in DNA repair compare
Pf6N2E2_5567 +0.4 0.7 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_3447 +0.4 1.6 FIG00959330: hypothetical protein compare
Pf6N2E2_3528 +0.4 1.8 hypothetical protein compare
Pf6N2E2_811 +0.4 2.1 Transcriptional regulator of various polyols utilization, AraC family compare
Pf6N2E2_3872 +0.4 1.2 hypothetical protein compare
Pf6N2E2_689 +0.4 0.9 FIG00956189: hypothetical protein compare
Pf6N2E2_2110 +0.4 1.1 LysR family transcriptional regulator near succinyl-CoA:3-ketoacid-coenzyme A transferase compare
Pf6N2E2_2518 +0.4 1.0 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_891 +0.4 1.1 4-oxalocrotonate tautomerase compare
Pf6N2E2_5910 +0.4 1.0 Flp pilus assembly protein RcpC/CpaB compare
Pf6N2E2_5730 +0.4 1.2 FIG00954480: hypothetical protein compare
Pf6N2E2_2772 +0.4 2.2 Uracil-DNA glycosylase, family 1 compare
Pf6N2E2_4672 +0.4 1.9 FIG00953568: hypothetical protein compare
Pf6N2E2_3328 +0.4 0.5 transcriptional regulator compare
Pf6N2E2_6164 +0.4 0.6 tRNA-Val-TAC compare
Pf6N2E2_1512 +0.4 1.3 Thiamin biosynthesis lipoprotein ApbE compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in lb experiments