Experiment set6IT094 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium Hydroxide 0.05 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5068 -4.9 -10.0 putative Cytochrome bd2, subunit I compare
Pf6N2E2_5006 -4.8 -7.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2646 -4.4 -3.0 FIG00953416: hypothetical protein compare
Pf6N2E2_5430 -4.3 -7.8 Transglycosylase, Slt family compare
Pf6N2E2_144 -4.3 -18.9 Uncharacterized protein YtfM precursor compare
Pf6N2E2_4678 -3.9 -1.9 hypothetical protein compare
Pf6N2E2_4159 -3.8 -4.5 Cytochrome c4 compare
Pf6N2E2_5069 -3.8 -6.3 putative Cytochrome bd2, subunit II compare
Pf6N2E2_5014 -3.8 -1.9 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3658 -3.7 -6.1 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_5316 -3.4 -2.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_5150 -3.3 -6.0 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_145 -3.2 -6.5 putative exported protein compare
Pf6N2E2_5178 -3.1 -3.0 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3661 -3.1 -2.1 hypothetical protein compare
Pf6N2E2_2274 -3.1 -5.8 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_4204 -3.0 -2.1 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_3617 -3.0 -4.9 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_6058 -2.9 -5.7 FIG139976: hypothetical protein compare
Pf6N2E2_3659 -2.9 -6.1 Protein fixF compare
Pf6N2E2_4372 -2.9 -5.1 FIG00460773: hypothetical protein compare
Pf6N2E2_2318 -2.7 -8.0 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2753 -2.7 -2.6 HtrA protease/chaperone protein compare
Pf6N2E2_2317 -2.7 -4.8 Putative analog of CcoH, COG3198 compare
Pf6N2E2_3460 -2.7 -1.8 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5646 -2.7 -2.5 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_2574 -2.7 -2.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_2506 -2.5 -11.7 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_2320 -2.5 -3.2 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_5705 -2.4 -2.1 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_2384 -2.4 -4.5 CmpX compare
Pf6N2E2_5671 -2.4 -3.5 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_3198 -2.4 -2.2 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_1056 -2.3 -1.4 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_5337 -2.3 -4.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3303 -2.3 -4.0 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_5242 -2.3 -2.6 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3477 -2.3 -2.4 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_5523 -2.2 -4.9 Small-conductance mechanosensitive channel compare
Pf6N2E2_6057 -2.2 -3.5 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_2708 -2.2 -4.8 Lactam utilization protein LamB compare
Pf6N2E2_5156 -2.2 -2.1 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_5252 -2.1 -2.0 FIG00956396: hypothetical protein compare
Pf6N2E2_5727 -2.1 -6.3 FIG00955360: hypothetical protein compare
Pf6N2E2_3257 -2.1 -2.8 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_3480 -2.1 -2.0 Transcriptional regulator, ArsR family compare
Pf6N2E2_4584 -2.1 -3.1 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3663 -2.0 -6.6 Glycosyl transferase compare
Pf6N2E2_4153 -2.0 -1.4 Sensory box histidine kinase compare
Pf6N2E2_3713 -2.0 -2.8 Acyl carrier protein compare
Pf6N2E2_3941 -2.0 -3.1 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5339 -2.0 -5.4 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_4762 -1.9 -2.8 Biotin synthesis protein BioH compare
Pf6N2E2_5425 -1.9 -1.7 hypothetical protein compare
Pf6N2E2_5103 -1.9 -1.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_5986 -1.9 -3.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3839 -1.9 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_2507 -1.8 -5.1 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2264 -1.8 -3.3 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_5406 -1.8 -2.2 FIG00958224: hypothetical protein compare
Pf6N2E2_2519 -1.8 -1.7 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_3607 -1.8 -7.5 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_4763 -1.8 -7.2 Biotin synthesis protein BioC compare
Pf6N2E2_4369 -1.8 -2.7 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4759 -1.8 -9.0 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_2189 -1.8 -4.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2707 -1.8 -3.6 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_4743 -1.7 -1.2 hypothetical protein compare
Pf6N2E2_4615 -1.7 -1.6 type IV pili signal transduction protein PilI compare
Pf6N2E2_5155 -1.7 -2.7 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_6063 -1.7 -6.3 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_4352 -1.7 -2.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3612 -1.6 -2.2 HflK protein compare
Pf6N2E2_5001 -1.6 -1.7 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_2510 -1.6 -3.8 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_3095 -1.6 -1.3 hypothetical protein compare
Pf6N2E2_4418 -1.6 -1.1 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_309 -1.6 -2.1 FIG00957702: hypothetical protein compare
Pf6N2E2_5929 -1.6 -5.1 FIG00954461: hypothetical protein compare
Pf6N2E2_4205 -1.6 -3.6 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_4611 -1.6 -3.3 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3655 -1.6 -9.1 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_5527 -1.6 -2.1 Cold shock protein CspC compare
Pf6N2E2_3791 -1.6 -5.9 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_4364 -1.6 -2.6 Protein YicC compare
Pf6N2E2_5338 -1.6 -6.1 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2012 -1.6 -2.6 hypothetical protein compare
Pf6N2E2_6060 -1.6 -3.6 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf6N2E2_5990 -1.5 -1.3 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_2219 -1.5 -1.7 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_2152 -1.5 -1.4 hypothetical protein compare
Pf6N2E2_282 -1.5 -2.0 GNAT family acetyltransferase YjcF compare
Pf6N2E2_4764 -1.5 -4.0 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_1634 -1.5 -4.0 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_2278 -1.5 -10.0 Transcription-repair coupling factor compare
Pf6N2E2_4585 -1.4 -7.4 Cell division protein FtsX compare
Pf6N2E2_4761 -1.4 -7.0 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_2755 -1.4 -1.4 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_3666 -1.4 -2.9 InaA protein compare
Pf6N2E2_5520 -1.4 -4.6 Sensory box histidine kinase compare
Pf6N2E2_2312 -1.4 -2.4 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_3665 -1.4 -0.9 serine/threonine protein kinase compare
Pf6N2E2_98 -1.4 -2.2 putative transmembrane protein compare
Pf6N2E2_5292 -1.4 -4.0 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
Pf6N2E2_2825 -1.4 -3.1 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_3096 -1.4 -1.3 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_2201 -1.4 -2.7 Transmembrane regulator protein PrtR compare
Pf6N2E2_3338 -1.4 -2.0 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_3782 -1.3 -3.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3635 -1.3 -1.7 FIG00953138: hypothetical protein compare
Pf6N2E2_3611 -1.3 -1.5 HflC protein compare
Pf6N2E2_5668 -1.3 -3.5 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_4803 -1.3 -1.5 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2413 -1.3 -2.0 FIG074102: hypothetical protein compare
Pf6N2E2_2459 -1.3 -1.9 Organic hydroperoxide resistance protein compare
Pf6N2E2_2310 -1.3 -6.4 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_2176 -1.3 -2.0 Amidases related to nicotinamidase compare
Pf6N2E2_971 -1.3 -1.9 hypothetical protein compare
Pf6N2E2_5536 -1.3 -1.4 Holliday junction DNA helicase RuvA compare
Pf6N2E2_5936 -1.2 -2.1 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Pf6N2E2_5993 -1.2 -1.9 FIG00957412: hypothetical protein compare
Pf6N2E2_479 -1.2 -2.3 Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data) compare
Pf6N2E2_5544 -1.2 -5.7 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_5452 -1.2 -2.7 hypothetical protein compare
Pf6N2E2_2311 -1.2 -5.1 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2261 -1.2 -4.2 VacJ-like lipoprotein precursor compare
Pf6N2E2_2509 -1.2 -1.9 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_5522 -1.2 -2.7 FIG001943: hypothetical protein YajQ compare
Pf6N2E2_3885 -1.2 -2.3 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_2706 -1.2 -2.3 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_3744 -1.2 -2.2 General secretion pathway protein F compare
Pf6N2E2_2999 -1.2 -2.2 probable tail fiber assembly protein compare
Pf6N2E2_75 -1.2 -2.7 Colicin V production protein compare
Pf6N2E2_2518 -1.2 -2.4 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_3834 -1.2 -3.8 Lipoprotein NlpD compare
Pf6N2E2_1116 -1.2 -0.9 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_4631 -1.2 -6.2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_4146 -1.2 -2.1 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_4045 -1.2 -2.0 FIG00953248: hypothetical protein compare
Pf6N2E2_4071 -1.2 -2.2 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_3373 -1.2 -1.4 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_2508 -1.2 -2.0 hypothetical protein compare
Pf6N2E2_449 -1.1 -2.4 Lactoylglutathione lyase (EC 4.4.1.5) compare
Pf6N2E2_2010 -1.1 -1.3 hypothetical protein compare
Pf6N2E2_3258 -1.1 -2.8 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_88 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_2138 -1.1 -2.5 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_237 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_3323 -1.1 -2.9 hypothetical protein compare
Pf6N2E2_4599 -1.1 -1.8 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_5766 -1.1 -1.2 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_5669 -1.1 -3.9 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_2126 -1.1 -3.8 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_3794 -1.1 -4.7 Proline iminopeptidase (EC 3.4.11.5) compare
Pf6N2E2_3301 -1.1 -6.9 ABC transporter, ATP-binding protein compare
Pf6N2E2_3285 -1.1 -2.9 Rod shape-determining protein MreD compare
Pf6N2E2_3792 -1.1 -3.1 Glucans biosynthesis protein G precursor compare
Pf6N2E2_193 -1.1 -2.9 hypothetical protein compare
Pf6N2E2_3785 -1.1 -3.3 Twin-arginine translocation protein TatB compare
Pf6N2E2_2281 -1.1 -1.4 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_4797 -1.0 -1.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_4160 -1.0 -1.0 Cytochrome c5 compare
Pf6N2E2_2912 -1.0 -1.1 FIG00954094: hypothetical protein compare
Pf6N2E2_5236 -1.0 -2.0 hypothetical protein compare
Pf6N2E2_3656 -1.0 -3.2 Probable transcription regulator Mig-14 compare
Pf6N2E2_2746 -1.0 -3.3 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_5444 -1.0 -2.7 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) compare
Pf6N2E2_3664 -1.0 -4.8 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_445 -1.0 -3.4 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_4614 -1.0 -2.1 twitching motility protein PilH compare
Pf6N2E2_5291 -1.0 -7.6 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_238 -1.0 -1.5 hypothetical protein compare
Pf6N2E2_2340 -1.0 -2.9 Transcriptional regulator, GntR family compare
Pf6N2E2_2822 -0.9 -4.3 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_3842 -0.9 -2.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_1147 -0.9 -1.7 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_89 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_4263 -0.9 -2.2 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf6N2E2_1632 -0.9 -2.8 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) compare
Pf6N2E2_1577 -0.9 -1.8 Glucose 1-dehydrogenase (EC 1.1.1.47) compare
Pf6N2E2_84 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_5052 -0.9 -1.4 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
Pf6N2E2_4157 -0.9 -2.7 Endonuclease/exonuclease/phosphatase family protein compare
Pf6N2E2_5647 -0.9 -1.9 Transcriptional regulator, TetR family compare
Pf6N2E2_4181 -0.9 -0.8 Organic hydroperoxide resistance protein compare
Pf6N2E2_2970 -0.9 -2.4 methylated-DNA--protein-cysteine methyltransferase-related protein compare
Pf6N2E2_4999 -0.9 -3.7 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_4889 -0.9 -3.4 Putative transport protein compare
Pf6N2E2_4043 -0.9 -1.9 Outer membrane receptor proteins, mostly Fe transport compare
Pf6N2E2_3277 -0.9 -1.6 FagA protein compare
Pf6N2E2_4708 -0.9 -2.1 hypothetical protein compare
Pf6N2E2_2513 -0.9 -2.5 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_3942 -0.9 -4.1 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_189 -0.9 -1.5 regulatory protein, putative compare
Pf6N2E2_737 -0.9 -1.0 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_2473 -0.9 -1.0 Major outer membrane lipoprotein I compare
Pf6N2E2_1625 -0.9 -2.0 Ferric reductase (1.6.99.14) compare
Pf6N2E2_3260 -0.9 -2.6 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_5820 -0.9 -1.9 FIG00957914: hypothetical protein compare
Pf6N2E2_1322 -0.9 -2.3 MoaE protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sodium Hydroxide in Pseudomonas fluorescens FW300-N2E2

For stress Sodium Hydroxide across organisms