Experiment set6IT094 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Threonine nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_24130 -6.0 -4.1 hypothetical protein compare
AO353_13165 -4.5 -4.4 ATP phosphoribosyltransferase regulatory subunit compare
AO353_20695 -4.2 -7.9 O-succinylhomoserine sulfhydrylase compare
AO353_07220 -4.1 -8.3 anthranilate synthase compare
AO353_12520 -4.1 -12.8 glutamate synthase compare
AO353_20635 -4.1 -12.5 3-isopropylmalate dehydrogenase compare
AO353_12145 -4.0 -5.4 nitrogen regulation protein NR(I) compare
AO353_20625 -4.0 -5.4 3-isopropylmalate dehydratase compare
AO353_07230 -4.0 -17.2 anthranilate synthase compare
AO353_12070 -3.9 -9.3 imidazoleglycerol-phosphate dehydratase compare
AO353_12515 -3.8 -22.9 glutamate synthase compare
AO353_20620 -3.8 -8.4 isopropylmalate isomerase compare
AO353_10710 -3.7 -4.4 tryptophan synthase subunit beta compare
AO353_20665 -3.6 -12.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_07210 -3.5 -6.7 indole-3-glycerol-phosphate synthase compare
AO353_02975 -3.5 -4.1 aspartate kinase compare
AO353_12085 -3.5 -9.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_05115 -3.5 -13.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12090 -3.5 -4.1 imidazole glycerol phosphate synthase subunit HisF compare
AO353_02070 -3.4 -9.5 prephenate dehydratase compare
AO353_08685 -3.4 -10.4 N-acetylglutamate synthase compare
AO353_12150 -3.4 -8.4 histidine kinase compare
AO353_12075 -3.4 -10.1 imidazole glycerol phosphate synthase subunit HisH compare
AO353_07215 -3.3 -9.3 anthranilate phosphoribosyltransferase compare
AO353_08780 -3.3 -9.4 5-formyltetrahydrofolate cyclo-ligase compare
AO353_08185 -3.3 -12.3 methionine biosynthesis protein MetW compare
AO353_09240 -3.3 -3.2 acetylglutamate kinase compare
AO353_18985 -3.2 -5.6 hypothetical protein compare
AO353_00310 -3.2 -11.1 transaldolase compare
AO353_02710 -3.2 -11.9 (p)ppGpp synthetase compare
AO353_05110 -3.2 -12.8 histidinol dehydrogenase compare
AO353_04155 -3.2 -13.5 ornithine carbamoyltransferase compare
AO353_08180 -3.1 -14.2 homoserine O-acetyltransferase compare
AO353_12365 -3.1 -5.5 phosphoribosyl-AMP cyclohydrolase compare
AO353_22800 -3.1 -4.6 sulfite reductase compare
AO353_22945 -3.0 -16.0 glycogen branching protein compare
AO353_09000 -2.9 -6.5 argininosuccinate lyase compare
AO353_15925 -2.9 -13.3 2-isopropylmalate synthase compare
AO353_14505 -2.8 -13.7 ketol-acid reductoisomerase compare
AO353_07155 -2.8 -8.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_05130 -2.8 -2.8 anti-anti-sigma factor compare
AO353_03500 -2.8 -14.0 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) conserved
AO353_20175 -2.8 -4.1 ATP-dependent Clp protease proteolytic subunit compare
AO353_07670 -2.8 -10.6 L-threonine aldolase (EC 4.1.2.5) (from data) conserved
AO353_20540 -2.6 -8.8 aromatic amino acid aminotransferase compare
AO353_08475 -2.6 -10.1 phosphoserine phosphatase compare
AO353_04105 -2.6 -10.4 argininosuccinate synthase compare
AO353_08015 -2.6 -8.8 5,10-methylenetetrahydrofolate reductase compare
AO353_08345 -2.6 -10.1 dihydroxy-acid dehydratase compare
AO353_14495 -2.5 -12.0 acetolactate synthase 3 catalytic subunit compare
AO353_14500 -2.5 -8.3 acetolactate synthase 3 regulatory subunit compare
AO353_03585 -2.4 -3.5 ATP-dependent DNA helicase RuvA compare
AO353_00825 -2.4 -5.9 porin compare
AO353_08885 -2.4 -14.8 polyphosphate kinase compare
AO353_03510 -2.3 -4.8 glycine cleavage system protein T compare
AO353_16450 -2.3 -13.0 protein-PII uridylyltransferase compare
AO353_10025 -2.2 -13.7 pyruvate carboxylase subunit B compare
AO353_10030 -2.2 -11.4 pyruvate carboxylase subunit A compare
AO353_14115 -2.1 -7.6 gamma-glutamyl kinase compare
AO353_12015 -2.1 -3.6 antitoxin compare
AO353_03250 -2.0 -3.5 gluconokinase compare
AO353_03490 -2.0 -8.6 Fis family transcriptional regulator conserved
AO353_06495 -1.9 -6.0 gamma-glutamyl phosphate reductase compare
AO353_03615 -1.9 -4.1 cold-shock protein compare
AO353_08165 -1.9 -3.7 pyrroline-5-carboxylate reductase compare
AO353_12360 -1.8 -7.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_07355 -1.8 -6.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_01375 -1.8 -5.5 phosphate acyltransferase compare
AO353_09070 -1.8 -10.5 ammonia channel protein compare
AO353_14775 -1.8 -5.9 hypothetical protein compare
AO353_00900 -1.8 -8.5 2-methylisocitrate lyase compare
AO353_10035 -1.8 -7.9 LysR family transcriptional regulator compare
AO353_02250 -1.7 -3.8 chorismate synthase compare
AO353_19060 -1.7 -5.7 CysB family transcriptional regulator compare
AO353_14990 -1.7 -1.9 hypothetical protein compare
AO353_12105 -1.6 -6.1 peptidase S41 compare
AO353_27650 -1.6 -4.8 cell division protein FtsK compare
AO353_03495 -1.6 -5.1 glycine cleavage system protein H conserved
AO353_12500 -1.6 -1.8 shikimate kinase compare
AO353_10455 -1.6 -2.3 tRNA modification GTPase MnmE compare
AO353_19090 -1.5 -2.4 MarR family transcriptional regulator compare
AO353_12115 -1.5 -2.6 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_03590 -1.5 -3.2 crossover junction endodeoxyribonuclease RuvC compare
AO353_14420 -1.5 -4.2 molecular chaperone DnaK compare
AO353_14220 -1.5 -1.6 ribosomal large subunit pseudouridine synthase D compare
AO353_01550 -1.5 -5.5 hypothetical protein compare
AO353_11945 -1.4 -1.3 4-oxalocrotonate tautomerase compare
AO353_09915 -1.4 -6.2 long-chain acyl-CoA thioester hydrolase compare
AO353_00890 -1.4 -4.5 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO353_21625 -1.4 -2.7 Fe/S biogenesis protein NfuA compare
AO353_23495 -1.4 -3.0 SAM-dependent methyltransferase compare
AO353_06050 -1.4 -6.0 exodeoxyribonuclease V subunit gamma compare
AO353_00495 -1.4 -2.7 DNA topoisomerase I compare
AO353_10670 -1.4 -6.1 shikimate dehydrogenase compare
AO353_09320 -1.4 -7.6 ATP-dependent DNA helicase RecG compare
AO353_16805 -1.4 -5.7 recombinase RecA compare
AO353_06045 -1.3 -6.3 exodeoxyribonuclease V subunit beta compare
AO353_06745 -1.3 -2.9 zinc-binding protein compare
AO353_03360 -1.3 -5.7 glucose-6-phosphate dehydrogenase compare
AO353_09890 -1.2 -3.8 phosphate ABC transporter ATP-binding protein compare
AO353_25450 -1.2 -2.5 cyanate hydratase compare
AO353_03020 -1.2 -6.0 arginine N-succinyltransferase compare
AO353_05690 -1.2 -3.0 SsrA-binding protein compare
AO353_10945 -1.2 -2.3 cytochrome C compare
AO353_05105 -1.2 -7.1 histidinol-phosphate aminotransferase compare
AO353_03420 -1.2 -3.1 phosphogluconate dehydratase compare
AO353_12665 -1.2 -2.5 glycosyl transferase compare
AO353_10705 -1.2 -2.8 tryptophan synthase subunit alpha compare
AO353_07525 -1.2 -8.2 biotin synthase compare
AO353_27680 -1.2 -4.8 ATP-dependent Clp protease adaptor ClpS compare
AO353_26885 -1.2 -5.6 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
AO353_14150 -1.1 -1.7 peptidylprolyl isomerase compare
AO353_28425 -1.1 -2.1 TetR family transcriptional regulator compare
AO353_28555 -1.1 -2.2 LysR family transcriptional regulator compare
AO353_06040 -1.1 -2.7 exodeoxyribonuclease V subunit alpha compare
AO353_03580 -1.1 -2.9 ATP-dependent DNA helicase RuvB compare
AO353_14370 -1.1 -4.8 glucose-6-phosphate isomerase compare
AO353_04365 -1.1 -3.5 recombinase XerD compare
AO353_09135 -1.0 -2.1 cytochrome C compare
AO353_08980 -1.0 -2.5 heme biosynthesis operon protein HemX compare
AO353_14930 -1.0 -3.0 GntR family transcriptional regulator compare
AO353_02020 -1.0 -3.6 hypothetical protein compare
AO353_13100 -1.0 -1.2 GTPase RsgA compare
AO353_12020 -1.0 -2.8 hypothetical protein compare
AO353_06725 -1.0 -1.6 hypothetical protein compare
AO353_01975 -1.0 -4.6 glycosyl transferase compare
AO353_27720 -1.0 -3.9 cupin compare
AO353_05625 -0.9 -1.5 transcription elongation factor GreA compare
AO353_18325 -0.9 -2.5 hypothetical protein compare
AO353_10040 -0.9 -5.2 transcriptional regulator compare
AO353_00750 -0.9 -3.0 GntR family transcriptional regulator compare
AO353_07290 -0.9 -4.9 mannose-1-phosphate guanylyltransferase compare
AO353_03025 -0.9 -3.3 acetylornithine aminotransferase compare
AO353_02720 -0.9 -2.7 cysteine synthase compare
AO353_09250 -0.9 -1.8 exodeoxyribonuclease III compare
AO353_07180 -0.9 -4.1 zinc-binding protein compare
AO353_26115 -0.9 -1.8 hypothetical protein compare
AO353_20095 -0.9 -3.6 histidine kinase compare
AO353_12420 -0.8 -2.6 predicted FeS cluster maintenance protein (from data) compare
AO353_16530 -0.8 -1.3 ribonuclease HII compare
AO353_29215 -0.8 -1.2 alpha/beta hydrolase compare
AO353_20565 -0.8 -1.2 tRNA-Ala compare
AO353_22700 -0.8 -1.6 LexA family transcriptional regulator compare
AO353_22930 -0.8 -2.0 hypothetical protein compare
AO353_18780 -0.8 -3.8 cobyrinic acid a,c-diamide synthase compare
AO353_01080 -0.8 -5.3 hypothetical protein compare
AO353_12795 -0.8 -2.9 ZapA compare
AO353_02040 -0.8 -2.2 integration host factor subunit beta compare
AO353_09285 -0.8 -5.0 reactive intermediate/imine deaminase compare
AO353_19530 -0.8 -1.6 quinohemoprotein amine dehydrogenase compare
AO353_02195 -0.8 -3.2 spermidine synthase compare
AO353_27685 -0.8 -2.7 cold-shock protein compare
AO353_15900 -0.8 -1.4 GTP-binding protein compare
AO353_23950 -0.8 -2.2 hypothetical protein compare
AO353_12880 -0.8 -1.0 ADP-heptose--LPS heptosyltransferase compare
AO353_14400 -0.8 -2.4 Fis family transcriptional regulator compare
AO353_27675 -0.8 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO353_19145 -0.8 -2.5 protease HtpX compare
AO353_03775 -0.8 -4.5 pyruvate kinase compare
AO353_18135 -0.8 -1.6 hypothetical protein compare
AO353_17640 -0.8 -1.6 serine peptidase compare
AO353_14595 -0.8 -4.2 carbonate dehydratase compare
AO353_06320 -0.7 -2.4 AsnC family transcriptional regulator compare
AO353_02595 -0.7 -1.8 cobalamin synthase compare
AO353_07515 -0.7 -1.4 transporter compare
AO353_28945 -0.7 -1.6 potassium-transporting ATPase subunit B compare
AO353_22530 -0.7 -2.4 hypothetical protein compare
AO353_16940 -0.7 -3.1 deoxycytidine triphosphate deaminase compare
AO353_26645 -0.7 -2.4 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
AO353_07315 -0.7 -1.4 rRNA methyltransferase compare
AO353_18305 -0.7 -2.0 RNA helicase compare
AO353_08115 -0.7 -3.4 energy transducer TonB compare
AO353_07520 -0.7 -5.1 8-amino-7-oxononanoate synthase compare
AO353_10930 -0.7 -3.6 DNA polymerase I compare
AO353_27235 -0.7 -3.0 hypothetical protein compare
AO353_02570 -0.7 -2.1 hypothetical protein compare
AO353_27665 -0.7 -4.3 arginyl-tRNA-protein transferase compare
AO353_06405 -0.7 -3.0 hypothetical protein compare
AO353_05080 -0.7 -4.7 sulfate adenylyltransferase compare
AO353_03505 -0.7 -4.0 serine dehydratase compare
AO353_02685 -0.7 -2.1 phosphoribosylglycinamide formyltransferase compare
AO353_26990 -0.7 -1.9 hypothetical protein compare
AO353_13200 -0.7 -4.7 exoribonuclease R compare
AO353_19965 -0.7 -2.4 phosphopantetheine-binding protein compare
AO353_06795 -0.7 -1.6 Isochorismatase compare
AO353_17085 -0.7 -1.6 hypothetical protein compare
AO353_08350 -0.7 -3.8 hypothetical protein compare
AO353_20815 -0.7 -2.2 LacI family transcriptional regulator compare
AO353_21175 -0.7 -2.2 hypothetical protein compare
AO353_19085 -0.7 -1.7 organic hydroperoxide resistance protein compare
AO353_17855 -0.7 -1.5 ribonuclease D compare
AO353_25220 -0.7 -2.4 hypothetical protein compare
AO353_02715 -0.7 -2.5 23S rRNA methyltransferase compare
AO353_11850 -0.7 -2.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_09690 -0.7 -1.9 hypothetical protein compare
AO353_20340 -0.7 -2.3 gamma-carboxygeranoyl-CoA hydratase compare
AO353_16605 -0.7 -4.6 protein-L-isoaspartate O-methyltransferase compare
AO353_03545 -0.6 -3.4 hypothetical protein compare
AO353_12710 -0.6 -1.2 thioredoxin compare
AO353_07510 -0.6 -4.1 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare


Specific Phenotypes

For 7 genes in this experiment

For nitrogen source L-Threonine in Pseudomonas fluorescens FW300-N2E3

For nitrogen source L-Threonine across organisms