Experiment set6IT094 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Threonine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
AO353_07665 +2.4 9.0 Serine hydroxymethyltransferase (EC 2.1.2.1) (from data) compare
AO353_13160 +1.7 6.2 membrane protease HflC compare
AO353_13155 +1.5 7.5 hypothetical protein compare
AO353_16615 +1.0 8.6 RNA polymerase sigma factor RpoS compare
AO353_06710 +0.9 2.4 riboflavin synthase subunit alpha compare
AO353_03255 +0.9 7.1 LacI family transcriptional regulator compare
AO353_12350 +0.8 2.5 preprotein translocase compare
AO353_12345 +0.8 1.6 twin-arginine protein translocation system subunit TatC compare
AO353_19340 +0.8 7.1 amino acid ABC transporter substrate-binding protein compare
AO353_27130 +0.8 2.5 hypothetical protein compare
AO353_03410 +0.8 2.5 chemotaxis protein CheY compare
AO353_15170 +0.8 2.1 cytochrome D ubiquinol oxidase subunit III compare
AO353_12790 +0.8 1.8 hypothetical protein compare
AO353_21905 +0.8 2.7 hypothetical protein compare
AO353_13660 +0.7 5.1 tRNA-dihydrouridine synthase B compare
AO353_04970 +0.7 3.2 cell division protein DedD compare
AO353_12690 +0.7 1.4 acyl carrier protein compare
AO353_03830 +0.7 2.6 antibiotic biosynthesis monooxygenase compare
AO353_13990 +0.7 3.5 carbon starvation protein A compare
AO353_22415 +0.7 2.2 alcohol dehydrogenase compare
AO353_09060 +0.7 2.1 hypothetical protein compare
AO353_06540 +0.7 1.3 hypothetical protein compare
AO353_26055 +0.6 1.5 hypothetical protein compare
AO353_18505 +0.6 1.3 translation initiation factor 2 compare
AO353_00125 +0.6 1.9 hypothetical protein compare
AO353_07270 +0.6 2.1 transcriptional regulator compare
AO353_08895 +0.6 3.8 hypothetical protein compare
AO353_27420 +0.6 2.7 DNA-binding protein compare
AO353_23220 +0.6 2.0 hypothetical protein compare
AO353_26440 +0.6 2.4 hypothetical protein compare
AO353_04810 +0.6 1.4 hypothetical protein compare
AO353_09560 +0.6 1.0 type VI secretion protein compare
AO353_01810 +0.6 4.5 branched-chain amino acid ABC transporter substrate-binding protein compare
AO353_11155 +0.6 5.0 thioesterase compare
AO353_25845 +0.6 1.4 GNAT family acetyltransferase compare
AO353_09745 +0.6 1.3 hypothetical protein compare
AO353_09840 +0.6 3.2 chorismate--pyruvate lyase compare
AO353_01060 +0.6 3.9 3-ketoacyl-ACP reductase compare
AO353_06400 +0.6 2.9 hypothetical protein compare
AO353_27215 +0.6 1.7 hypothetical protein compare
AO353_21455 +0.6 1.2 cation:proton antiporter compare
AO353_11160 +0.6 4.0 GntR family transcriptional regulator compare
AO353_20840 +0.6 1.8 ribose pyranase compare
AO353_10780 +0.6 1.4 DNA-binding protein compare
AO353_15665 +0.6 2.4 chemotaxis protein CheY compare
AO353_22980 +0.5 2.4 hypothetical protein compare
AO353_14030 +0.5 4.3 ABC transporter ATP-binding protein compare
AO353_22985 +0.5 1.7 hypothetical protein compare
AO353_11710 +0.5 2.4 taurine dioxygenase compare
AO353_24415 +0.5 1.2 glutamine ABC transporter ATP-binding protein compare
AO353_08030 +0.5 3.9 DEAD/DEAH box helicase compare
AO353_07460 +0.5 1.3 DNA-binding protein compare
AO353_12565 +0.5 1.1 type II secretion system protein GspH compare
AO353_08955 +0.5 3.3 transcriptional regulator compare
AO353_01055 +0.5 4.5 AraC family transcriptional regulator compare
AO353_03300 +0.5 1.8 hypothetical protein compare
AO353_16345 +0.5 1.7 energy transducer TonB compare
AO353_13800 +0.5 2.1 hypothetical protein compare
AO353_28640 +0.5 2.2 hypothetical protein compare
AO353_10510 +0.5 1.1 benzoate transporter compare
AO353_04090 +0.5 1.7 leucyl-tRNA synthetase compare
AO353_04930 +0.5 1.4 flavodoxin compare
AO353_18600 +0.5 2.3 flagellar basal-body rod protein FlgG compare
AO353_08120 +0.5 2.2 hypothetical protein compare
AO353_23325 +0.5 1.2 hypothetical protein compare
AO353_07445 +0.5 0.7 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_07800 +0.5 2.7 transcriptional repressor BetI compare
AO353_18630 +0.5 3.4 beta-ketoacyl-ACP synthase compare
AO353_15050 +0.5 2.1 nitrate transport permease nrtB compare
AO353_27410 +0.5 1.7 hypothetical protein compare
AO353_05340 +0.5 2.5 histidine kinase compare
AO353_14860 +0.5 2.0 hypoxanthine-guanine phosphoribosyltransferase compare
AO353_22215 +0.5 1.6 hypothetical protein compare
AO353_07140 +0.5 4.4 peptidase M23 compare
AO353_28015 +0.5 1.7 hypothetical protein compare
AO353_09040 +0.5 0.9 diaminopimelate epimerase compare
AO353_04405 +0.5 3.2 MFS transporter compare
AO353_13920 +0.5 1.4 dihydroxyacetone kinase compare
AO353_13600 +0.5 2.0 precorrin-6Y C5,15-methyltransferase compare
AO353_21300 +0.5 2.1 glycolate oxidase iron-sulfur subunit compare
AO353_01065 +0.5 2.9 acetyl-CoA acetyltransferase compare
AO353_00325 +0.5 2.4 pilus assembly protein compare
AO353_13925 +0.5 1.0 XRE family transcriptional regulator compare
AO353_25385 +0.5 2.0 molybdenum cofactor biosynthesis protein MoaC compare
AO353_00620 +0.4 1.2 cytochrome C oxidase Cbb3 compare
AO353_24560 +0.4 2.0 transcriptional regulator compare
AO353_27535 +0.4 1.7 3-hydroxybutyryl-CoA dehydrogenase compare
AO353_13670 +0.4 1.7 ribosomal protein L11 methyltransferase compare
AO353_17005 +0.4 1.5 hypothetical protein compare
AO353_16040 +0.4 1.2 hypothetical protein compare
AO353_28930 +0.4 0.8 hypothetical protein compare
AO353_13985 +0.4 1.4 pilus assembly protein compare
AO353_19045 +0.4 2.3 2-dehydropantoate 2-reductase compare
AO353_25925 +0.4 0.9 hypothetical protein compare
AO353_10990 +0.4 2.9 glutamate:protein symporter compare
AO353_19040 +0.4 2.8 thioredoxin compare
AO353_08965 +0.4 2.7 transcriptional regulator compare
AO353_04240 +0.4 1.2 chemotaxis protein CheW compare
AO353_06380 +0.4 2.5 ATP-binding protein compare
AO353_05520 +0.4 2.2 nicotinate-nucleotide pyrophosphorylase compare
AO353_04110 +0.4 1.7 hypothetical protein compare
AO353_26450 +0.4 1.4 hypothetical protein compare
AO353_10310 +0.4 1.7 CopG family transcriptional regulator compare
AO353_09720 +0.4 0.9 hypothetical protein compare
AO353_23215 +0.4 1.6 calpastatin compare
AO353_02580 +0.4 3.8 Long-chain fatty acid transport protein compare
AO353_22595 +0.4 1.7 hypothetical protein compare
AO353_03815 +0.4 1.0 heme utilization protein compare
AO353_08245 +0.4 1.1 cell division ATP-binding protein FtsE compare
AO353_12780 +0.4 3.1 potassium:proton antiporter compare
AO353_06425 +0.4 1.5 lipoyl synthase compare
AO353_06820 +0.4 2.0 hypothetical protein compare
AO353_17940 +0.4 1.3 hypothetical protein compare
AO353_05415 +0.4 0.8 hypothetical protein compare
AO353_21595 +0.4 2.6 serine/threonine protein kinase compare
AO353_00165 +0.4 2.3 lysis protein compare
AO353_03105 +0.4 2.5 XRE family transcriptional regulator compare
AO353_16195 +0.4 1.0 DNA mismatch repair protein MutT compare
AO353_02260 +0.4 2.3 hypothetical protein compare
AO353_26285 +0.4 1.2 hypothetical protein compare
AO353_03135 +0.4 1.7 hypothetical protein compare
AO353_15130 +0.4 2.3 hypothetical protein compare
AO353_02885 +0.4 1.0 flagellar biosynthesis protein FlgN compare
AO353_05280 +0.4 0.8 4-carboxymuconolactone decarboxylase compare
AO353_24985 +0.4 1.6 L-seryl-tRNA(Sec) selenium transferase compare
AO353_13995 +0.4 2.1 hypothetical protein compare
AO353_00090 +0.4 1.4 hypothetical protein compare
AO353_12580 +0.4 1.3 type II secretory protein PulK compare
AO353_27180 +0.4 1.6 peptidase M48, Ste24p compare
AO353_15680 +0.4 1.4 cation-binding protein compare
AO353_13405 +0.4 1.5 urease accessory protein UreF compare
AO353_04185 +0.4 1.9 DeoR family transcriptional regulator compare
AO353_04055 +0.4 0.8 methionine--tRNA ligase compare
AO353_25160 +0.4 1.5 ABC transporter substrate-binding protein compare
AO353_26275 +0.4 1.4 hypothetical protein compare
AO353_13965 +0.4 1.9 large-conductance mechanosensitive channel compare
AO353_27395 +0.4 2.0 hypothetical protein compare
AO353_17205 +0.4 1.3 beta-ketoadipyl CoA thiolase compare
AO353_19770 +0.4 0.9 peptidase compare
AO353_03050 +0.4 2.5 ABC transporter for L-Arginine and L-Citrulline, permease component 2 (from data) compare
AO353_22645 +0.4 0.7 hypothetical protein compare
AO353_22040 +0.4 2.3 molybdenum cofactor biosynthesis protein B compare
AO353_03520 +0.4 1.3 hypothetical protein compare
AO353_26070 +0.4 1.3 hypothetical protein compare
AO353_06300 +0.4 2.5 ATP-dependent helicase compare
AO353_03305 +0.4 2.4 hypothetical protein compare
AO353_23670 +0.4 1.6 glutathione S-transferase compare
AO353_28475 +0.4 2.1 NmrA family transcriptional regulator compare
AO353_21255 +0.4 1.3 ABC transporter ATP-binding protein compare
AO353_10890 +0.4 2.2 methionine ABC transporter ATP-binding protein compare
AO353_00350 +0.4 1.6 copper-binding protein compare
AO353_24915 +0.4 0.9 hypothetical protein compare
AO353_29270 +0.4 1.5 type VI secretion system protein compare
AO353_28115 +0.4 1.6 DNA glycosylase compare
AO353_14635 +0.4 1.6 cupin compare
AO353_13110 +0.4 2.3 putative transporter, required for glycine utilization (from data) compare
AO353_13900 +0.4 2.6 kinase compare
AO353_10500 +0.4 1.4 acetylornithine aminotransferase compare
AO353_27385 +0.4 1.7 hypothetical protein compare
AO353_04065 +0.4 1.5 electron transporter RnfB compare
AO353_18500 +0.4 0.8 chemotaxis protein CheY compare
AO353_21030 +0.4 1.6 hypothetical protein compare
AO353_21925 +0.4 2.5 uroporphyrin-III methyltransferase compare
AO353_07495 +0.4 3.1 acyl-CoA dehydrogenase compare
AO353_27220 +0.4 1.4 hypothetical protein compare
AO353_03130 +0.4 1.2 hypothetical protein compare
AO353_01675 +0.4 1.9 transcriptional regulator compare
AO353_26810 +0.4 1.4 (2Fe-2S)-binding protein compare
AO353_02970 +0.4 1.0 carbon storage regulator compare
AO353_08465 +0.4 3.1 phosphoenolpyruvate-protein phosphotransferase compare
AO353_13780 +0.4 2.1 peptidase A24 compare
AO353_01070 +0.3 3.2 poly(R)-hydroxyalkanoic acid synthase compare
AO353_00255 +0.3 1.4 hypothetical protein compare
AO353_21350 +0.3 1.2 methylmalonate-semialdehyde dehydrogenase compare
AO353_13465 +0.3 2.3 hypothetical protein compare
AO353_00440 +0.3 1.8 hypothetical protein compare
AO353_28390 +0.3 1.4 hypothetical protein compare
AO353_17625 +0.3 2.5 RNA polymerase subunit sigma compare
AO353_08280 +0.3 2.1 3-mercaptopyruvate sulfurtransferase compare
AO353_13975 +0.3 2.4 hypothetical protein compare
AO353_11775 +0.3 2.1 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_24850 +0.3 1.7 aspartate aminotransferase compare
AO353_00480 +0.3 1.8 hypothetical protein compare
AO353_22270 +0.3 1.4 antibiotic biosynthesis monooxygenase compare
AO353_10620 +0.3 1.8 hypothetical protein compare
AO353_19680 +0.3 2.1 mechanosensitive ion channel protein MscS compare
AO353_17165 +0.3 1.2 ATP-dependent helicase compare
AO353_03670 +0.3 1.6 ornithine acetyltransferase compare
AO353_17965 +0.3 1.3 hypothetical protein compare
AO353_11785 +0.3 1.6 hypothetical protein compare
AO353_19590 +0.3 2.1 NAD-dependent dehydratase compare
AO353_18610 +0.3 1.5 flagellar biosynthesis protein FlgI compare
AO353_19035 +0.3 2.1 pilus assembly protein PilZ compare
AO353_08555 +0.3 1.5 hypothetical protein compare
AO353_19070 +0.3 1.2 hypothetical protein compare
AO353_20790 +0.3 1.5 penicillin-binding protein activator LpoB compare
AO353_12465 +0.3 1.6 hypothetical protein compare
AO353_18120 +0.3 0.9 hypothetical protein compare
AO353_19885 +0.3 1.4 ion transporter compare
AO353_03290 +0.3 0.5 peptide deformylase compare


Specific Phenotypes

For 7 genes in this experiment

For nitrogen source L-Threonine in Pseudomonas fluorescens FW300-N2E3

For nitrogen source L-Threonine across organisms