Experiment set6IT093 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Vanillyl Alcohol 0.005 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5069 -4.1 -6.2 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3842 -4.1 -4.8 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_5014 -3.9 -1.9 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_3839 -3.8 -5.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3252 -3.1 -7.4 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3782 -3.1 -4.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_4204 -3.1 -2.1 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_4159 -3.0 -4.6 Cytochrome c4 compare
Pf6N2E2_2274 -3.0 -6.1 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2320 -2.8 -3.8 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2574 -2.7 -2.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_3658 -2.7 -7.4 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_3617 -2.7 -5.4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5068 -2.7 -11.6 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3303 -2.6 -4.9 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_5242 -2.5 -2.9 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_5316 -2.5 -2.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3251 -2.5 -8.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3257 -2.5 -2.4 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_1124 -2.4 -3.5 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_1056 -2.4 -1.5 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_5150 -2.3 -5.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3611 -2.2 -2.1 HflC protein compare
Pf6N2E2_2318 -2.2 -6.7 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5178 -2.2 -2.9 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2317 -2.2 -4.7 Putative analog of CcoH, COG3198 compare
Pf6N2E2_5705 -2.2 -2.7 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_2218 -2.1 -3.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5337 -2.1 -4.4 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3783 -2.1 -3.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_4584 -2.1 -2.7 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3841 -2.1 -5.1 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_4153 -2.1 -1.4 Sensory box histidine kinase compare
Pf6N2E2_3253 -2.0 -5.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_3610 -2.0 -4.2 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_3661 -2.0 -3.8 hypothetical protein compare
Pf6N2E2_3941 -2.0 -3.5 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_5338 -2.0 -7.5 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2261 -2.0 -5.5 VacJ-like lipoprotein precursor compare
Pf6N2E2_579 -2.0 -2.3 FIG00962753: hypothetical protein compare
Pf6N2E2_2310 -1.9 -8.1 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_5527 -1.9 -2.2 Cold shock protein CspC compare
Pf6N2E2_2219 -1.9 -2.0 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_5647 -1.9 -4.8 Transcriptional regulator, TetR family compare
Pf6N2E2_2311 -1.9 -6.5 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_1248 -1.9 -3.2 MutT/nudix family protein compare
Pf6N2E2_1694 -1.9 -1.8 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_2384 -1.8 -4.1 CmpX compare
Pf6N2E2_2181 -1.8 -2.3 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2127 -1.8 -4.1 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_2313 -1.8 -3.2 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_2217 -1.8 -3.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3659 -1.7 -4.9 Protein fixF compare
Pf6N2E2_3258 -1.7 -3.2 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5245 -1.7 -5.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3260 -1.7 -3.8 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2473 -1.6 -1.6 Major outer membrane lipoprotein I compare
Pf6N2E2_2126 -1.6 -5.2 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_1006 -1.6 -3.4 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Pf6N2E2_5320 -1.6 -6.2 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_4585 -1.6 -8.5 Cell division protein FtsX compare
Pf6N2E2_2152 -1.6 -1.8 hypothetical protein compare
Pf6N2E2_3940 -1.6 -6.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2507 -1.6 -4.2 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_6100 -1.6 -2.8 tRNA-Val-TAC compare
Pf6N2E2_2822 -1.5 -5.1 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_2189 -1.5 -4.3 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3786 -1.5 -2.7 Twin-arginine translocation protein TatC compare
Pf6N2E2_4889 -1.5 -4.5 Putative transport protein compare
Pf6N2E2_3666 -1.5 -3.2 InaA protein compare
Pf6N2E2_5342 -1.5 -2.3 21 kDa hemolysin precursor compare
Pf6N2E2_1673 -1.5 -2.2 Transcriptional regulator, TetR family compare
Pf6N2E2_4601 -1.5 -2.0 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
Pf6N2E2_6064 -1.5 -4.7 2-methylaconitate isomerase compare
Pf6N2E2_4369 -1.4 -2.5 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5944 -1.4 -4.6 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_4071 -1.4 -3.8 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_5727 -1.4 -4.3 FIG00955360: hypothetical protein compare
Pf6N2E2_2282 -1.4 -2.9 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_5339 -1.4 -4.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2755 -1.4 -1.1 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_5508 -1.4 -1.8 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_3607 -1.4 -6.4 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3908 -1.4 -4.8 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_919 -1.4 -1.5 FIG00954373: hypothetical protein compare
Pf6N2E2_5430 -1.4 -6.4 Transglycosylase, Slt family compare
Pf6N2E2_5226 -1.4 -1.7 FIG00955589: hypothetical protein compare
Pf6N2E2_5733 -1.4 -3.2 NLP/P60 family protein compare
Pf6N2E2_3325 -1.4 -2.4 ABC transporter, ATP-binding protein compare
Pf6N2E2_2827 -1.3 -1.1 hypothetical protein compare
Pf6N2E2_3847 -1.3 -3.1 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_5319 -1.3 -4.7 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_6140 -1.3 -1.1 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_5510 -1.3 -2.4 FIG00955324: hypothetical protein compare
Pf6N2E2_924 -1.3 -2.2 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_5671 -1.3 -2.6 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_4451 -1.3 -4.1 FIG139438: lipoprotein B compare
Pf6N2E2_5321 -1.3 -6.0 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_2487 -1.3 -1.0 FIG00956090: hypothetical protein compare
Pf6N2E2_3198 -1.3 -1.7 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_3791 -1.3 -6.3 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_1009 -1.3 -2.3 Inositol transport system permease protein compare
Pf6N2E2_5536 -1.2 -1.4 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4454 -1.2 -4.1 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_6081 -1.2 -2.9 Transcriptional regulator, TetR family, in cluster with 2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent compare
Pf6N2E2_127 -1.2 -1.6 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_40 -1.2 -4.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2264 -1.2 -3.0 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_2201 -1.2 -3.1 Transmembrane regulator protein PrtR compare
Pf6N2E2_6082 -1.2 -3.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5155 -1.2 -2.3 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_3720 -1.2 -1.3 FIG027190: Putative transmembrane protein compare
Pf6N2E2_1797 -1.2 -1.4 Transcriptional regulator compare
Pf6N2E2_2506 -1.2 -6.9 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_423 -1.2 -1.9 Putative phosphatase YfbT compare
Pf6N2E2_5444 -1.2 -2.6 Phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-) compare
Pf6N2E2_445 -1.2 -4.3 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_309 -1.2 -1.3 FIG00957702: hypothetical protein compare
Pf6N2E2_4072 -1.2 -3.8 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_3454 -1.1 -2.3 hypothetical protein compare
Pf6N2E2_5318 -1.1 -8.3 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_4710 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_2340 -1.1 -3.4 Transcriptional regulator, GntR family compare
Pf6N2E2_5544 -1.1 -4.1 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_3480 -1.1 -1.4 Transcriptional regulator, ArsR family compare
Pf6N2E2_2519 -1.0 -1.3 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_5172 -1.0 -2.3 FOG: TPR repeat compare
Pf6N2E2_500 -1.0 -2.2 Beta-ureidopropionase (EC 3.5.1.6) compare
Pf6N2E2_3521 -1.0 -4.9 Sensor histidine kinase/response regulator compare
Pf6N2E2_1545 -1.0 -2.5 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_2138 -1.0 -2.9 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_2708 -1.0 -3.4 Lactam utilization protein LamB compare
Pf6N2E2_6063 -1.0 -4.1 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_4999 -1.0 -3.8 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_5669 -1.0 -3.7 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_21 -1.0 -2.7 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis compare
Pf6N2E2_2278 -1.0 -7.0 Transcription-repair coupling factor compare
Pf6N2E2_1081 -1.0 -1.4 probable membrane protein YPO3302 compare
Pf6N2E2_3744 -1.0 -2.0 General secretion pathway protein F compare
Pf6N2E2_4187 -1.0 -2.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_155 -1.0 -2.3 Probable transmembrane protein compare
Pf6N2E2_2316 -1.0 -4.6 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf6N2E2_2375 -1.0 -1.6 Response regulator NasT compare
Pf6N2E2_2018 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_1492 -1.0 -2.4 No significant database matches compare
Pf6N2E2_5646 -1.0 -0.7 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_3785 -1.0 -3.1 Twin-arginine translocation protein TatB compare
Pf6N2E2_2869 -0.9 -1.1 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_987 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_5571 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_3328 -0.9 -1.5 transcriptional regulator compare
Pf6N2E2_2962 -0.9 -2.4 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_2061 -0.9 -2.6 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_5522 -0.9 -2.5 FIG001943: hypothetical protein YajQ compare
Pf6N2E2_4993 -0.9 -1.4 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_5291 -0.9 -7.4 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_2552 -0.9 -3.7 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_282 -0.9 -1.0 GNAT family acetyltransferase YjcF compare
Pf6N2E2_1196 -0.9 -3.9 hypothetical protein compare
Pf6N2E2_4996 -0.9 -2.3 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_2312 -0.9 -1.2 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_4611 -0.9 -2.5 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3834 -0.9 -2.7 Lipoprotein NlpD compare
Pf6N2E2_414 -0.9 -2.4 Chemotaxis protein CheD compare
Pf6N2E2_479 -0.9 -2.2 Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data) compare
Pf6N2E2_159 -0.9 -2.4 DNA damage resistance protein (from data) compare
Pf6N2E2_2059 -0.9 -2.0 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_1298 -0.9 -3.2 Xanthine transporter,putative compare
Pf6N2E2_5252 -0.9 -1.3 FIG00956396: hypothetical protein compare
Pf6N2E2_5748 -0.9 -1.4 Transcriptional activator protein LuxR compare
Pf6N2E2_4467 -0.9 -2.5 hypothetical protein compare
Pf6N2E2_1312 -0.9 -1.8 4-hydroxyphenylacetate symporter, major facilitator superfamily (MFS) compare
Pf6N2E2_144 -0.9 -7.2 Uncharacterized protein YtfM precursor compare
Pf6N2E2_3542 -0.9 -6.9 Outer membrane receptor proteins, mostly Fe transport compare
Pf6N2E2_1652 -0.9 -1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_4545 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_2193 -0.9 -3.1 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
Pf6N2E2_2633 -0.9 -2.1 Nitroreductase family protein compare
Pf6N2E2_5505 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_3095 -0.9 -0.9 hypothetical protein compare
Pf6N2E2_1701 -0.9 -1.3 ABC transporter ATP-binding protein compare
Pf6N2E2_4263 -0.8 -2.0 Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family compare
Pf6N2E2_5747 -0.8 -2.1 Two-component response regulator compare
Pf6N2E2_1782 -0.8 -1.9 STAS domain protein compare
Pf6N2E2_3201 -0.8 -2.6 Transcriptional regulator, MerR family compare
Pf6N2E2_3039 -0.8 -2.8 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_1723 -0.8 -2.0 Transcriptional regulator, TetR family compare
Pf6N2E2_5906 -0.8 -1.8 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_392 -0.8 -3.3 Transcriptional regulator compare
Pf6N2E2_506 -0.8 -2.7 Hydrogen cyanide synthase HcnA / Opine oxidase subunit C compare
Pf6N2E2_1147 -0.8 -1.6 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_2753 -0.8 -1.1 HtrA protease/chaperone protein compare
Pf6N2E2_5739 -0.8 -0.6 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_2325 -0.8 -2.9 Recombination protein RecR compare
Pf6N2E2_5755 -0.8 -1.9 FIG00956435: hypothetical protein compare
Pf6N2E2_2428 -0.8 -1.9 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_2447 -0.8 -3.7 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_5771 -0.8 -3.1 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_2938 -0.8 -2.5 Outer membrane lipoprotein compare
Pf6N2E2_1824 -0.8 -1.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress Vanillyl Alcohol across organisms