Experiment set6IT093 for Pseudomonas fluorescens FW300-N2C3

Compare to:

4C survival; 672 hrs

200 most important genes:

  gene name fitness t score description  
AO356_09540 -4.3 -2.9 twin-arginine protein translocation system subunit TatC compare
AO356_09765 -3.9 -3.8 sulfurtransferase compare
AO356_15325 -3.9 -4.1 hypothetical protein compare
AO356_10170 -3.8 -3.7 chemotaxis protein CheY compare
AO356_06575 -3.6 -2.4 outer membrane protein assembly factor BamB compare
AO356_21465 -3.5 -5.3 amidophosphoribosyltransferase compare
AO356_02460 -3.5 -3.4 hypothetical protein compare
AO356_16955 -3.5 -7.4 disulfide bond formation protein B compare
AO356_16600 -3.3 -3.2 malate:quinone oxidoreductase compare
AO356_22795 -3.3 -3.9 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_09940 -3.2 -3.1 hypothetical protein compare
AO356_03415 -3.2 -8.7 oxidoreductase compare
AO356_09755 -3.2 -6.4 preprotein translocase subunit SecB compare
AO356_16070 -3.1 -7.5 poly(A) polymerase compare
AO356_03405 -3.1 -4.2 serine acetyltransferase compare
AO356_18020 -3.1 -4.7 ATP-dependent DNA helicase RuvA compare
AO356_02875 -3.0 -6.6 peroxiredoxin compare
AO356_11450 -3.0 -2.9 cytochrome C compare
AO356_04560 -3.0 -2.9 serine peptidase compare
AO356_28200 -2.9 -9.6 macrolide transporter compare
AO356_11610 -2.9 -2.8 glycerol acyltransferase compare
AO356_08640 -2.9 -3.4 membrane protease HflC compare
AO356_19420 -2.9 -2.0 septum formation inhibitor compare
AO356_09795 -2.9 -2.0 imidazole glycerol phosphate synthase subunit HisF compare
AO356_07390 -2.9 -2.8 polyribonucleotide nucleotidyltransferase compare
AO356_07540 -2.9 -2.8 SsrA-binding protein compare
AO356_01750 -2.8 -3.8 ATP-dependent Clp protease proteolytic subunit compare
AO356_21275 -2.8 -2.7 peptidase compare
AO356_18890 -2.8 -3.5 flagellar biosynthesis protein FlgN compare
AO356_08905 -2.8 -3.3 glycosyl transferase compare
AO356_03775 -2.7 -2.2 flagellar assembly protein FliO compare
AO356_03620 -2.7 -4.8 cytochrome C compare
AO356_01270 -2.6 -7.8 (Fe-S)-binding protein compare
AO356_07910 -2.6 -2.5 exodeoxyribonuclease V subunit alpha compare
AO356_14295 -2.6 -2.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_02465 -2.5 -3.4 carbonate dehydratase compare
AO356_17070 -2.5 -3.0 cytochrome B compare
AO356_20475 -2.5 -3.3 hypothetical protein compare
AO356_08895 -2.5 -2.4 GlcNAc-PI de-N-acetylase compare
AO356_07480 -2.5 -3.4 carbamoyl phosphate synthase large subunit compare
AO356_06995 -2.5 -6.4 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_19090 -2.5 -3.3 phosphoribosylaminoimidazole synthetase compare
AO356_17065 -2.4 -2.4 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_06990 -2.4 -4.9 toluene tolerance protein compare
AO356_06385 -2.4 -3.9 recombinase XerD compare
AO356_20175 -2.4 -2.8 3-oxoacyl-ACP synthase compare
AO356_19425 -2.3 -2.7 lipid A biosynthesis lauroyl acyltransferase compare
AO356_27180 -2.3 -4.7 hypothetical protein compare
AO356_03495 -2.3 -3.8 phosphoglycolate phosphatase compare
AO356_15460 -2.2 -2.1 hypothetical protein compare
AO356_03400 -2.2 -5.4 aminotransferase DegT compare
AO356_11420 -2.2 -8.3 histidine kinase compare
AO356_17520 -2.2 -2.1 phosphoribosylformylglycinamidine synthase compare
AO356_23500 -2.2 -7.5 TetR family transcriptional regulator compare
AO356_15645 -2.2 -7.1 ubiquinol oxidase subunit II compare
AO356_09800 -2.1 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_18805 -2.1 -2.0 magnesium transporter compare
AO356_28205 -2.1 -7.4 hemolysin secretion protein D compare
AO356_18025 -2.1 -3.4 ATP-dependent DNA helicase RuvB compare
AO356_03855 -2.1 -9.8 AAA family ATPase compare
AO356_03500 -2.1 -4.8 3-oxoacyl-ACP reductase compare
AO356_17075 -2.1 -2.5 cytochrome C compare
AO356_12520 -2.1 -2.8 orotate phosphoribosyltransferase compare
AO356_09565 -2.1 -7.8 glucan biosynthesis protein G compare
AO356_02285 -2.0 -6.8 beta-hexosaminidase compare
AO356_14360 -2.0 -4.9 mannose-1-phosphate guanylyltransferase compare
AO356_15640 -2.0 -7.5 cytochrome D ubiquinol oxidase subunit I compare
AO356_02405 -2.0 -10.7 cytochrome C oxidase Cbb3 compare
AO356_07105 -2.0 -8.4 hypothetical protein compare
AO356_02335 -2.0 -4.7 hypothetical protein compare
AO356_20880 -2.0 -2.4 3-methylitaconate isomerase compare
AO356_05995 -2.0 -3.3 hypothetical protein compare
AO356_08735 -2.0 -8.9 phosphoserine phosphatase compare
AO356_01745 -2.0 -5.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_07005 -2.0 -2.0 ABC transporter ATP-binding protein compare
AO356_04555 -2.0 -7.9 peptidase M48 compare
AO356_09455 -2.0 -1.9 ATP-dependent protease subunit HslV compare
AO356_22150 -1.9 -8.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO356_03755 -1.9 -9.8 flagellar biosynthetic protein FlhB compare
AO356_01740 -1.9 -3.4 DNA-binding protein compare
AO356_05225 -1.9 -4.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_20875 -1.9 -7.3 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO356_21320 -1.9 -1.8 tRNA-Asn compare
AO356_09560 -1.9 -9.0 glucosyltransferase MdoH compare
AO356_22095 -1.9 -5.8 cupin compare
AO356_03725 -1.9 -2.6 histidine kinase compare
AO356_03350 -1.8 -6.7 glycosyl transferase compare
AO356_20135 -1.8 -7.7 peptidase S49 compare
AO356_03780 -1.8 -2.1 flagellar motor switch protein compare
AO356_07915 -1.8 -3.0 exodeoxyribonuclease V subunit beta compare
AO356_02190 -1.8 -5.7 hypothetical protein compare
AO356_19080 -1.8 -9.2 dehydrogenase compare
AO356_02420 -1.8 -6.3 cytochrome C oxidase Cbb3 compare
AO356_03360 -1.8 -3.3 hypothetical protein compare
AO356_18930 -1.8 -11.2 flagellar biosynthesis protein FlgE compare
AO356_09835 -1.8 -5.4 iron transporter compare
AO356_07210 -1.8 -3.2 histidine kinase compare
AO356_11585 -1.8 -4.6 lipid A biosynthesis lauroyl acyltransferase compare
AO356_08610 -1.8 -6.5 exoribonuclease R compare
AO356_04885 -1.8 -6.1 multidrug transporter compare
AO356_03815 -1.8 -7.2 flagellar biogenesis protein compare
AO356_03880 -1.7 -6.8 flagellin compare
AO356_12640 -1.7 -2.6 cytochrome C compare
AO356_08875 -1.7 -2.7 toluene tolerance protein compare
AO356_03900 -1.7 -9.9 flagellar biosynthesis protein FlgL compare
AO356_08670 -1.7 -2.3 N-acetylmuramoyl-L-alanine amidase compare
AO356_03760 -1.7 -5.8 flagellar biosynthetic protein FliR compare
AO356_03355 -1.7 -3.8 hypothetical protein compare
AO356_04965 -1.7 -1.5 ATP-dependent helicase compare
AO356_08645 -1.7 -4.0 hypothetical protein compare
AO356_03685 -1.7 -7.1 chemotaxis protein CheW compare
AO356_01275 -1.7 -5.5 GntR family transcriptional regulator compare
AO356_03865 -1.6 -8.4 flagellar export chaperone FliS compare
AO356_25610 -1.6 -6.1 hypothetical protein compare
AO356_11205 -1.6 -6.7 copper-binding protein compare
AO356_03365 -1.6 -3.8 UDP-N-acetylglucosamine 2-epimerase compare
AO356_08910 -1.6 -4.3 carbamoyltransferase compare
AO356_12780 -1.6 -5.9 argininosuccinate lyase compare
AO356_03870 -1.6 -8.6 flagellar hook protein FliD compare
AO356_11990 -1.6 -9.8 DNA helicase II compare
AO356_03835 -1.6 -7.7 flagellar M-ring protein FliF compare
AO356_03840 -1.6 -5.5 flagellar hook-basal body protein FliE compare
AO356_17515 -1.5 -8.1 murein transglycosylase compare
AO356_05555 -1.5 -10.9 AmpG family muropeptide MFS transporter compare
AO356_08320 -1.5 -2.6 copper resistance protein CopZ compare
AO356_02250 -1.5 -6.6 pyridine nucleotide-disulfide oxidoreductase compare
AO356_00575 -1.5 -2.5 SCP-2 family sterol carrier protein compare
AO356_18275 -1.5 -8.5 ornithine carbamoyltransferase compare
AO356_15420 -1.5 -4.4 hypothetical protein compare
AO356_03920 -1.5 -7.5 flagellar basal body L-ring protein compare
AO356_03730 -1.5 -8.4 flagellar biosynthesis sigma factor compare
AO356_03785 -1.5 -7.7 flagellar motor switch protein FliM compare
AO356_03745 -1.5 -9.5 flagellar biosynthesis protein FlhA compare
AO356_14335 -1.5 -3.5 rRNA methyltransferase compare
AO356_17890 -1.5 -1.3 H-NS histone compare
AO356_13195 -1.5 -8.0 thiol-disulfide isomerase compare
AO356_16050 -1.5 -2.8 glucose-6-phosphate isomerase compare
AO356_02410 -1.5 -3.6 cytochrome C oxidase Cbb3 compare
AO356_18915 -1.5 -5.2 flagellar biosynthesis protein FlgB compare
AO356_18925 -1.5 -6.8 flagellar biosynthesis protein FlgD compare
AO356_11025 -1.5 -3.5 transcriptional regulator PhoU compare
AO356_03820 -1.5 -9.8 flagellar protein export ATPase FliI compare
AO356_03420 -1.4 -6.3 UDP-N-acetyl-D-glucosamine dehydrogenase compare
AO356_20865 -1.4 -6.8 2-methylisocitrate lyase compare
AO356_18325 -1.4 -8.0 argininosuccinate synthase compare
AO356_24665 -1.4 -5.9 AAA family ATPase compare
AO356_18920 -1.4 -7.5 flagellar basal-body rod protein FlgC compare
AO356_19875 -1.4 -4.8 hypothetical protein compare
AO356_04875 -1.4 -6.4 antibiotic transporter compare
AO356_18900 -1.4 -5.9 flagellar biosynthesis protein FlgA compare
AO356_04565 -1.4 -6.5 RNA polymerase subunit sigma compare
AO356_03795 -1.4 -7.5 flagellar hook-length control protein compare
AO356_26040 -1.4 -1.7 hypothetical protein compare
AO356_03905 -1.4 -5.6 flagellar biosynthesis protein FlgK compare
AO356_02430 -1.4 -4.9 cytochrome C oxidase Cbb3 compare
AO356_03925 -1.4 -5.6 flagellar basal-body rod protein FlgG compare
AO356_10165 -1.4 -4.3 ATPase compare
AO356_03910 -1.4 -6.0 flagellar biosynthesis protein FlgJ compare
AO356_03830 -1.4 -4.0 flagellar motor switch protein FliG compare
AO356_06150 -1.4 -2.5 energy transducer TonB compare
AO356_24655 -1.4 -3.1 hypothetical protein compare
AO356_14790 -1.4 -6.3 MFS transporter compare
AO356_14500 -1.4 -6.2 anhydro-N-acetylmuramic acid kinase compare
AO356_25795 -1.3 -1.8 transglutaminase compare
AO356_03915 -1.3 -6.0 flagellar biosynthesis protein FlgI compare
AO356_24485 -1.3 -1.4 SAM-dependent methyltransferase compare
AO356_03680 -1.3 -8.8 chemotaxis protein compare
AO356_09810 -1.3 -4.4 imidazole glycerol phosphate synthase subunit HisH compare
AO356_03345 -1.3 -6.9 hypothetical protein compare
AO356_22140 -1.3 -3.5 cold-shock protein compare
AO356_10185 -1.3 -6.2 glutamate--cysteine ligase compare
AO356_08880 -1.3 -5.2 glycosyl transferase compare
AO356_03770 -1.3 -2.9 flagellar biosynthesis protein flip compare
AO356_03765 -1.3 -5.5 flagellar biosynthetic protein FliQ compare
AO356_05540 -1.3 -2.0 cold-shock protein compare
AO356_25260 -1.3 -1.6 iron transporter compare
AO356_02425 -1.3 -6.5 cytochrome C oxidase Cbb3 compare
AO356_13350 -1.3 -9.7 cell division protein FtsX compare
AO356_08660 -1.3 -6.3 tRNA dimethylallyltransferase compare
AO356_17830 -1.3 -3.0 pyruvate kinase compare
AO356_22825 -1.2 -2.6 transcriptional regulator compare
AO356_24245 -1.2 -2.6 siderophore-iron reductase FhuF compare
AO356_14355 -1.2 -7.3 aminoglycoside phosphotransferase compare
AO356_15920 -1.2 -3.0 DNA transporter compare
AO356_09520 -1.2 -3.9 phosphoribosyl-AMP cyclohydrolase compare
AO356_12515 -1.2 -2.9 exodeoxyribonuclease III compare
AO356_18320 -1.2 -6.8 hypothetical protein compare
AO356_06685 -1.2 -0.9 preprotein translocase subunit YajC compare
AO356_03705 -1.2 -5.1 flagellar motor protein compare
AO356_02265 -1.2 -2.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_25865 -1.2 -1.7 peroxidase compare
AO356_14505 -1.2 -1.6 peptidase M23 compare
AO356_07920 -1.2 -4.2 exodeoxyribonuclease V subunit gamma compare
AO356_04570 -1.2 -3.8 RNA polymerase subunit sigma compare
AO356_03715 -1.2 -5.4 chemotaxis protein CheA compare
AO356_17985 -1.2 -4.2 cold-shock protein compare
AO356_02175 -1.2 -5.5 transaldolase compare
AO356_01255 -1.2 -6.0 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
AO356_18910 -1.2 -6.2 chemotaxis protein compare
AO356_07385 -1.1 -1.3 tRNA-Thr compare


Specific Phenotypes

For 16 genes in this experiment