Experiment set6IT093 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Serine nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_20695 -5.0 -6.0 O-succinylhomoserine sulfhydrylase compare
AO353_20625 -4.4 -4.3 3-isopropylmalate dehydratase compare
AO353_12085 -4.0 -7.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_07220 -3.9 -8.7 anthranilate synthase compare
AO353_02070 -3.9 -8.7 prephenate dehydratase compare
AO353_15500 -3.9 -13.3 L-serine ammonia-lyase (EC 4.3.1.17) (from data) conserved
AO353_20635 -3.9 -13.0 3-isopropylmalate dehydrogenase compare
AO353_08185 -3.8 -11.9 methionine biosynthesis protein MetW compare
AO353_12515 -3.8 -22.3 glutamate synthase compare
AO353_13165 -3.8 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
AO353_20665 -3.7 -12.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_15505 -3.7 -13.4 LysR family transcriptional regulator conserved
AO353_05115 -3.7 -12.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12070 -3.7 -9.7 imidazoleglycerol-phosphate dehydratase compare
AO353_12520 -3.6 -13.6 glutamate synthase compare
AO353_21595 -3.6 -8.8 serine/threonine protein kinase compare
AO353_07230 -3.6 -17.8 anthranilate synthase compare
AO353_14505 -3.5 -13.3 ketol-acid reductoisomerase compare
AO353_07515 -3.5 -3.4 transporter compare
AO353_08780 -3.5 -9.5 5-formyltetrahydrofolate cyclo-ligase compare
AO353_09285 -3.5 -12.8 reactive intermediate/imine deaminase compare
AO353_10710 -3.5 -5.3 tryptophan synthase subunit beta compare
AO353_08180 -3.5 -14.7 homoserine O-acetyltransferase compare
AO353_12090 -3.4 -4.0 imidazole glycerol phosphate synthase subunit HisF compare
AO353_20620 -3.4 -7.0 isopropylmalate isomerase compare
AO353_10035 -3.4 -11.0 LysR family transcriptional regulator compare
AO353_12365 -3.4 -5.1 phosphoribosyl-AMP cyclohydrolase compare
AO353_00310 -3.4 -10.5 transaldolase compare
AO353_08345 -3.2 -10.1 dihydroxy-acid dehydratase compare
AO353_10670 -3.2 -8.6 shikimate dehydrogenase compare
AO353_09915 -3.1 -9.9 long-chain acyl-CoA thioester hydrolase compare
AO353_04155 -3.1 -13.3 ornithine carbamoyltransferase compare
AO353_12075 -3.1 -10.4 imidazole glycerol phosphate synthase subunit HisH compare
AO353_08685 -3.1 -10.0 N-acetylglutamate synthase compare
AO353_02710 -3.1 -11.7 (p)ppGpp synthetase compare
AO353_07215 -3.0 -9.3 anthranilate phosphoribosyltransferase compare
AO353_12360 -3.0 -10.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_13100 -3.0 -2.9 GTPase RsgA compare
AO353_12500 -3.0 -2.0 shikimate kinase compare
AO353_07210 -3.0 -7.0 indole-3-glycerol-phosphate synthase compare
AO353_12145 -2.9 -5.9 nitrogen regulation protein NR(I) compare
AO353_10705 -2.9 -5.2 tryptophan synthase subunit alpha compare
AO353_14495 -2.9 -11.7 acetolactate synthase 3 catalytic subunit compare
AO353_10030 -2.9 -12.8 pyruvate carboxylase subunit A compare
AO353_07525 -2.9 -15.2 biotin synthase compare
AO353_07155 -2.8 -7.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_10025 -2.8 -14.8 pyruvate carboxylase subunit B compare
AO353_09000 -2.8 -6.7 argininosuccinate lyase compare
AO353_20540 -2.8 -9.3 aromatic amino acid aminotransferase compare
AO353_08015 -2.8 -8.6 5,10-methylenetetrahydrofolate reductase compare
AO353_14220 -2.7 -2.6 ribosomal large subunit pseudouridine synthase D compare
AO353_06495 -2.7 -6.5 gamma-glutamyl phosphate reductase compare
AO353_05110 -2.7 -10.7 histidinol dehydrogenase compare
AO353_15925 -2.7 -11.8 2-isopropylmalate synthase compare
AO353_22800 -2.7 -4.7 sulfite reductase compare
AO353_07520 -2.7 -13.9 8-amino-7-oxononanoate synthase compare
AO353_14115 -2.7 -8.2 gamma-glutamyl kinase compare
AO353_09240 -2.6 -4.3 acetylglutamate kinase compare
AO353_14500 -2.6 -8.2 acetolactate synthase 3 regulatory subunit compare
AO353_08475 -2.5 -8.8 phosphoserine phosphatase compare
AO353_04105 -2.5 -10.1 argininosuccinate synthase compare
AO353_03100 -2.5 -2.4 XRE family transcriptional regulator compare
AO353_08045 -2.5 -15.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_07505 -2.5 -9.7 dethiobiotin synthetase compare
AO353_07510 -2.5 -11.5 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_03020 -2.4 -8.9 arginine N-succinyltransferase compare
AO353_19060 -2.4 -6.8 CysB family transcriptional regulator compare
AO353_00825 -2.4 -5.6 porin compare
AO353_05130 -2.4 -2.7 anti-anti-sigma factor compare
AO353_01375 -2.4 -7.6 phosphate acyltransferase compare
AO353_02005 -2.4 -2.6 hypothetical protein compare
AO353_02685 -2.3 -4.6 phosphoribosylglycinamide formyltransferase compare
AO353_14775 -2.3 -7.4 hypothetical protein compare
AO353_03795 -2.3 -5.3 fumarate hydratase compare
AO353_03615 -2.2 -3.3 cold-shock protein compare
AO353_03360 -2.2 -8.2 glucose-6-phosphate dehydrogenase compare
AO353_06320 -2.1 -5.8 AsnC family transcriptional regulator compare
AO353_03580 -2.0 -4.3 ATP-dependent DNA helicase RuvB compare
AO353_12105 -1.9 -6.8 peptidase S41 compare
AO353_24260 -1.9 -2.9 hypothetical protein compare
AO353_27650 -1.9 -5.3 cell division protein FtsK compare
AO353_02300 -1.8 -3.6 MarR family transcriptional regulator compare
AO353_09890 -1.8 -4.9 phosphate ABC transporter ATP-binding protein compare
AO353_02250 -1.8 -4.1 chorismate synthase compare
AO353_19750 -1.8 -2.4 diaminopimelate epimerase compare
AO353_14420 -1.8 -4.1 molecular chaperone DnaK compare
AO353_08165 -1.7 -3.3 pyrroline-5-carboxylate reductase compare
AO353_03585 -1.7 -2.4 ATP-dependent DNA helicase RuvA compare
AO353_03015 -1.7 -4.4 arginine N-succinyltransferase compare
AO353_19360 -1.6 -3.2 peroxiredoxin compare
AO353_06155 -1.6 -6.4 copper-transporting ATPase compare
AO353_16940 -1.5 -5.4 deoxycytidine triphosphate deaminase compare
AO353_14395 -1.5 -4.2 poly(A) polymerase compare
AO353_14150 -1.5 -2.0 peptidylprolyl isomerase compare
AO353_13640 -1.5 -4.5 histidine kinase compare
AO353_05105 -1.5 -6.9 histidinol-phosphate aminotransferase compare
AO353_09720 -1.5 -1.6 hypothetical protein compare
AO353_03590 -1.5 -3.4 crossover junction endodeoxyribonuclease RuvC compare
AO353_11165 -1.5 -7.6 hypothetical protein compare
AO353_16450 -1.4 -8.6 protein-PII uridylyltransferase compare
AO353_12150 -1.4 -3.8 histidine kinase compare
AO353_06045 -1.4 -6.1 exodeoxyribonuclease V subunit beta compare
AO353_13140 -1.4 -5.2 tRNA dimethylallyltransferase compare
AO353_27500 -1.4 -2.6 hypothetical protein compare
AO353_27435 -1.4 -2.9 hypothetical protein compare
AO353_15185 -1.3 -4.7 ATPase compare
AO353_13605 -1.3 -6.9 oxidoreductase compare
AO353_08775 -1.3 -2.2 cell division protein ZapA compare
AO353_04065 -1.3 -2.8 electron transporter RnfB compare
AO353_15730 -1.3 -2.8 hypothetical protein compare
AO353_09250 -1.3 -2.8 exodeoxyribonuclease III compare
AO353_08885 -1.3 -9.1 polyphosphate kinase compare
AO353_02765 -1.3 -3.1 NAD(P)H-quinone oxidoreductase compare
AO353_05075 -1.3 -7.1 adenylylsulfate kinase compare
AO353_15830 -1.3 -2.8 transcriptional regulator compare
AO353_09905 -1.2 -6.4 phosphate-binding protein compare
AO353_14400 -1.2 -3.3 Fis family transcriptional regulator compare
AO353_02640 -1.2 -2.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_14740 -1.2 -3.4 GTP-binding protein compare
AO353_14595 -1.2 -6.3 carbonate dehydratase compare
AO353_04565 -1.2 -4.5 nucleoid-associated protein compare
AO353_15900 -1.2 -2.2 GTP-binding protein compare
AO353_10445 -1.2 -2.0 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_06050 -1.1 -5.2 exodeoxyribonuclease V subunit gamma compare
AO353_09155 -1.1 -5.0 amino acid dehydrogenase compare
AO353_13080 -1.1 -5.3 thiosulfate sulfurtransferase compare
AO353_21625 -1.1 -1.5 Fe/S biogenesis protein NfuA compare
AO353_03420 -1.1 -3.3 phosphogluconate dehydratase compare
AO353_07355 -1.1 -4.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_20175 -1.1 -2.7 ATP-dependent Clp protease proteolytic subunit compare
AO353_00515 -1.0 -1.9 hypothetical protein compare
AO353_19090 -1.0 -2.0 MarR family transcriptional regulator compare
AO353_05010 -1.0 -2.3 HopJ type III effector protein compare
AO353_08880 -1.0 -2.2 exopolyphosphatase compare
AO353_19530 -1.0 -1.7 quinohemoprotein amine dehydrogenase compare
AO353_00495 -1.0 -1.9 DNA topoisomerase I compare
AO353_02720 -1.0 -4.2 cysteine synthase compare
AO353_12510 -1.0 -6.2 cell division protein compare
AO353_21655 -1.0 -3.1 cobalamin biosynthesis protein CobW compare
AO353_00490 -1.0 -2.4 PasA protein compare
AO353_13245 -1.0 -5.2 hypothetical protein compare
AO353_21615 -1.0 -6.4 methionine synthase compare
AO353_12990 -1.0 -3.5 multidrug DMT transporter compare
AO353_20495 -1.0 -2.2 NUDIX hydrolase compare
AO353_05625 -1.0 -1.3 transcription elongation factor GreA compare
AO353_15905 -1.0 -4.3 outer membrane protein assembly factor BamB compare
AO353_02630 -0.9 -1.7 5,6-dimethylbenzimidazole synthase compare
AO353_04220 -0.9 -3.7 chemotaxis protein CheY compare
AO353_02600 -0.9 -1.6 alpha-ribazole phosphatase compare
AO353_13220 -0.9 -3.7 hypothetical protein compare
AO353_27350 -0.9 -2.6 hypothetical protein compare
AO353_22580 -0.9 -2.1 3-demethylubiquinone-9 3-methyltransferase compare
AO353_05080 -0.9 -5.5 sulfate adenylyltransferase compare
AO353_12240 -0.9 -3.5 histidine utilization repressor compare
AO353_04175 -0.9 -3.1 glycerol uptake facilitator GlpF compare
AO353_13200 -0.9 -5.5 exoribonuclease R compare
AO353_16745 -0.9 -2.1 ArsR family transcriptional regulator compare
AO353_20170 -0.9 -3.2 trigger factor compare
AO353_21660 -0.9 -6.1 cobalamin biosynthesis protein CobN compare
AO353_10320 -0.9 -1.3 hypothetical protein compare
AO353_11770 -0.9 -1.7 molecular chaperone Hsp33 compare
AO353_21630 -0.9 -2.2 precorrin-4 C11-methyltransferase compare
AO353_04355 -0.9 -1.6 homoserine dehydrogenase compare
AO353_01800 -0.9 -3.1 hypothetical protein compare
AO353_14370 -0.9 -3.9 glucose-6-phosphate isomerase compare
AO353_02635 -0.9 -4.3 cobyrinic acid a,c-diamide synthase compare
AO353_06425 -0.9 -2.4 lipoyl synthase compare
AO353_02075 -0.8 -4.7 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_02625 -0.8 -5.3 cobalamin biosynthesis protein CobD compare
AO353_13615 -0.8 -6.2 precorrin-2 C20-methyltransferase compare
AO353_24120 -0.8 -1.4 hypothetical protein compare
AO353_22025 -0.8 -1.6 iron-sulfur cluster repair di-iron protein compare
AO353_08350 -0.8 -3.9 hypothetical protein compare
AO353_16835 -0.8 -1.3 LuxR family transcriptional regulator compare
AO353_02000 -0.8 -2.4 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_29355 -0.8 -2.7 hypothetical protein compare
AO353_14060 -0.8 -1.9 hypothetical protein compare
AO353_07315 -0.8 -1.4 rRNA methyltransferase compare
AO353_24130 -0.8 -2.1 hypothetical protein compare
AO353_06160 -0.8 -2.9 transcriptional regulator compare
AO353_09140 -0.8 -4.1 XRE family transcriptional regulator compare
AO353_05150 -0.8 -2.9 ABC transporter ATP-binding protein compare
AO353_10825 -0.8 -5.8 hypothetical protein compare
AO353_09900 -0.8 -4.6 phosphate ABC transporter permease compare
AO353_02010 -0.8 -3.3 glycosyl transferase family 1 compare
AO353_08115 -0.8 -3.7 energy transducer TonB compare
AO353_28425 -0.8 -2.1 TetR family transcriptional regulator compare
AO353_26240 -0.8 -2.7 hypothetical protein compare
AO353_02610 -0.8 -3.6 adenosylcobinamide kinase compare
AO353_05690 -0.8 -2.2 SsrA-binding protein compare
AO353_20095 -0.8 -3.0 histidine kinase compare
AO353_22500 -0.8 -1.4 hypothetical protein compare
AO353_09860 -0.8 -5.1 histidine kinase compare
AO353_02220 -0.8 -1.4 hypothetical protein compare
AO353_28945 -0.8 -1.8 potassium-transporting ATPase subunit B compare
AO353_22945 -0.8 -5.1 glycogen branching protein compare
AO353_09885 -0.8 -1.3 transcriptional regulator PhoU compare
AO353_06795 -0.8 -1.8 Isochorismatase compare
AO353_09050 -0.8 -2.5 recombinase XerC compare
AO353_25310 -0.7 -2.2 malonate carrier protein compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source L-Serine in Pseudomonas fluorescens FW300-N2E3

For nitrogen source L-Serine across organisms