Experiment set6IT093 for Herbaspirillum seropedicae SmR1

Compare to:

Carbon source D-Glucose 20 mM

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS13890 +1.6 9.7 LuxR family transcriptional regulator compare
HSERO_RS14985 +1.4 7.6 transcriptional regulator compare
HSERO_RS18740 +1.4 2.7 hypothetical protein compare
HSERO_RS13885 +1.4 8.7 histidine kinase compare
HSERO_RS10145 +1.3 10.6 flagellar biosynthesis protein FlhA compare
HSERO_RS10255 +1.2 4.9 flagellar biosynthesis protein FliQ compare
HSERO_RS10305 +1.2 7.8 flagellar motor switch protein FliG compare
HSERO_RS10285 +1.2 6.1 flagellar hook-length control protein compare
HSERO_RS10140 +1.2 8.7 flagellar biosynthesis protein FlhB compare
HSERO_RS10215 +1.1 8.0 flagellar P-ring protein FlgI compare
HSERO_RS14975 +1.1 4.7 flagellar motor protein MotA compare
HSERO_RS10970 +1.1 3.3 NfeD family protein compare
HSERO_RS10310 +1.1 7.2 flagellar M-ring protein FliF compare
HSERO_RS05150 +1.1 5.1 galactonate dehydratase compare
HSERO_RS10260 +1.1 5.2 flagellar biosynthesis protein FliP compare
HSERO_RS13040 +1.0 3.3 hypothetical protein compare
HSERO_RS10150 +1.0 8.4 flagellar biosynthesis regulator FlhF compare
HSERO_RS08790 +1.0 1.1 hypothetical protein compare
HSERO_RS16640 +1.0 3.0 ABC transporter substrate-binding protein compare
HSERO_RS05325 +1.0 2.0 ribose ABC transporter permease compare
HSERO_RS10290 +1.0 3.8 flagellar biosynthesis protein FliJ compare
HSERO_RS03925 +1.0 2.3 hypothetical protein compare
HSERO_RS10190 +0.9 2.6 flagellar basal body rod modification protein FlgD compare
HSERO_RS10250 +0.9 6.3 flagellar biosynthesis protein FliR compare
HSERO_RS10175 +0.9 6.5 flagellar basal body P-ring biosynthesis protein FlgA compare
HSERO_RS10315 +0.9 6.6 flagellar hook-basal body protein FliE compare
HSERO_RS18550 +0.9 1.6 excinuclease ATPase subunit compare
HSERO_RS09335 +0.9 2.0 DNA-3-methyladenine glycosylase compare
HSERO_RS23765 +0.8 1.8 hypothetical protein compare
HSERO_RS00895 +0.8 1.7 L-proline ABC transporter, ATPase component 1 (from data) compare
HSERO_RS10275 +0.8 3.6 flagellar motor switch protein FliM compare
HSERO_RS14970 +0.8 4.2 flagellar motor protein MotB compare
HSERO_RS10765 +0.8 2.1 hypothetical protein compare
HSERO_RS10265 +0.8 3.8 flagellar biosynthesis protein FliO compare
HSERO_RS03915 +0.8 1.6 hypothetical protein compare
HSERO_RS09910 +0.8 1.5 integration host factor subunit alpha compare
HSERO_RS01880 +0.8 2.4 N-acetyl-anhydromuranmyl-L-alanine amidase compare
HSERO_RS10295 +0.8 5.1 ATP synthase compare
HSERO_RS02815 +0.8 2.6 HxlR family transcriptional regulator compare
HSERO_RS10805 +0.8 1.2 succinyldiaminopimelate aminotransferase compare
HSERO_RS09205 +0.8 1.9 glutathione ABC transporter permease compare
HSERO_RS04230 +0.8 2.9 LuxR family transcriptional regulator compare
HSERO_RS10225 +0.8 4.8 flagellar hook protein FlgK compare
HSERO_RS20825 +0.8 2.3 ABC transporter permease compare
HSERO_RS05100 +0.8 3.9 sugar ABC transporter permease compare
HSERO_RS03875 +0.7 1.2 hypothetical protein compare
HSERO_RS16490 +0.7 5.5 FimV compare
HSERO_RS10185 +0.7 5.7 flagellar basal body rod protein FlgC compare
HSERO_RS05855 +0.7 4.9 flagellar motor protein MotA compare
HSERO_RS18970 +0.7 2.1 hypothetical protein compare
HSERO_RS13055 +0.7 2.3 energy transducer TonB compare
HSERO_RS10200 +0.7 4.4 flagellar basal body rod protein FlgF compare
HSERO_RS09420 +0.7 4.2 HAD family hydrolase compare
HSERO_RS06330 +0.7 2.8 transcriptional regulator compare
HSERO_RS05440 +0.7 1.2 hypothetical protein compare
HSERO_RS04015 +0.7 2.5 flagellar biosynthesis/type III secretory pathway protein compare
HSERO_RS04135 +0.7 1.2 amidohydrolase compare
HSERO_RS00450 +0.7 2.2 phosphoenolpyruvate-protein phosphotransferase compare
HSERO_RS17290 +0.7 2.1 chromate transporter compare
HSERO_RS16305 +0.7 2.2 hypothetical protein compare
HSERO_RS11105 +0.7 1.2 beta-lactamase compare
HSERO_RS11165 +0.7 2.1 arylesterase compare
HSERO_RS18685 +0.7 1.0 hypothetical protein compare
HSERO_RS11185 +0.7 2.5 amino acid dehydrogenase compare
HSERO_RS10280 +0.7 1.5 flagellar basal body protein FliL compare
HSERO_RS02665 +0.7 1.8 hypothetical protein compare
HSERO_RS10095 +0.7 1.7 hypothetical protein compare
HSERO_RS22025 +0.6 2.6 aromatic amino acid aminotransferase compare
HSERO_RS10205 +0.6 3.6 flagellar basal body rod protein FlgG compare
HSERO_RS01590 +0.6 3.1 antibiotic biosynthesis monooxygenase compare
HSERO_RS04525 +0.6 2.0 lysozyme compare
HSERO_RS01915 +0.6 4.4 membrane protein compare
HSERO_RS05095 +0.6 3.3 LacI family transcription regulator compare
HSERO_RS12105 +0.6 4.0 RpiR family transcriptional regulator compare
HSERO_RS17855 +0.6 2.2 DEAD/DEAH box helicase compare
HSERO_RS06370 +0.6 1.8 aromatic compound catabolic protein compare
HSERO_RS19950 +0.6 2.1 Rieske (2Fe-2S) protein compare
HSERO_RS01920 +0.6 3.1 50S ribosomal protein L11 methyltransferase compare
HSERO_RS16890 +0.6 1.9 hypothetical protein compare
HSERO_RS09750 +0.6 3.0 8-amino-7-oxononanoate synthase compare
HSERO_RS03980 +0.6 2.2 type III secretion HrcS protein compare
HSERO_RS00805 +0.6 0.9 preprotein translocase subunit SecB compare
HSERO_RS18690 +0.6 1.8 short-chain dehydrogenase compare
HSERO_RS15620 +0.6 2.4 glycosyl transferase family 1 compare
HSERO_RS03700 +0.6 1.3 type VI secretion protein compare
HSERO_RS22450 +0.6 2.1 aldose 1-epimerase compare
HSERO_RS22350 +0.6 1.1 urea carboxylase compare
HSERO_RS07530 +0.6 2.1 amino acid ABC transporter permease compare
HSERO_RS21735 +0.6 1.5 hypothetical protein compare
HSERO_RS14260 +0.6 0.7 ferredoxin compare
HSERO_RS19770 +0.6 1.3 hypothetical protein compare
HSERO_RS12400 +0.6 2.5 signal peptidase compare
HSERO_RS10210 +0.6 1.7 flagellar L-ring protein FlgH compare
HSERO_RS19460 +0.6 1.2 LysR family transcriptional regulator compare
HSERO_RS08555 +0.6 1.2 agmatinase compare
HSERO_RS15350 +0.6 1.9 membrane protein compare
HSERO_RS15205 +0.6 0.9 LysR family transcriptional regulator compare
HSERO_RS20640 +0.6 2.7 enoyl-CoA hydratase compare
HSERO_RS13340 +0.5 1.0 hypothetical protein compare
HSERO_RS04825 +0.5 1.3 XRE family transcriptional regulator compare
HSERO_RS23610 +0.5 1.7 urease subunit gamma compare
HSERO_RS23155 +0.5 1.6 AraC family transcriptional regulator compare
HSERO_RS23435 +0.5 0.5 MerR family transcriptional regulator compare
HSERO_RS10195 +0.5 4.3 flagellar hook protein FlgE compare
HSERO_RS09920 +0.5 3.0 acetyltransferase compare
HSERO_RS02800 +0.5 0.7 hypothetical protein compare
HSERO_RS12475 +0.5 1.2 histidine kinase compare
HSERO_RS14325 +0.5 2.3 hypothetical protein compare
HSERO_RS05090 +0.5 3.0 sugar ABC transporter ATP-binding protein compare
HSERO_RS18010 +0.5 0.6 pseudouridine synthase compare
HSERO_RS00410 +0.5 1.2 phosphoheptose isomerase compare
HSERO_RS05165 +0.5 1.9 galactose-1-epimerase compare
HSERO_RS07800 +0.5 1.2 transcriptional regulator compare
HSERO_RS14210 +0.5 2.2 homocitrate synthase compare
HSERO_RS19965 +0.5 3.2 phosphodiesterase compare
HSERO_RS06805 +0.5 1.0 transcriptional regulator compare
HSERO_RS04665 +0.5 1.5 nitrile hydratase compare
HSERO_RS19515 +0.5 1.6 7-cyano-7-deazaguanine reductase compare
HSERO_RS03995 +0.5 1.3 hypothetical protein compare
HSERO_RS13335 +0.5 0.9 hypothetical protein compare
HSERO_RS12010 +0.5 1.7 hemerythrin compare
HSERO_RS17870 +0.5 3.6 glucokinase compare
HSERO_RS18770 +0.5 1.5 transcriptional regulator compare
HSERO_RS18150 +0.5 1.6 hypothetical protein compare
HSERO_RS06745 +0.5 0.9 hypothetical protein compare
HSERO_RS08565 +0.5 3.7 RNA helicase compare
HSERO_RS04000 +0.5 1.4 type III secretion protein compare
HSERO_RS20250 +0.5 0.4 large conductance mechanosensitive channel protein MscL compare
HSERO_RS18470 +0.5 1.2 acyltransferase compare
HSERO_RS15315 +0.5 1.5 transcriptional regulator compare
HSERO_RS01020 +0.5 1.8 hypothetical protein compare
HSERO_RS23635 +0.5 1.9 urease accessory protein UreG compare
HSERO_RS14165 +0.5 1.5 hypothetical protein compare
HSERO_RS12050 +0.5 2.0 AraC family transcriptional regulator compare
HSERO_RS15900 +0.5 2.3 hypothetical protein compare
HSERO_RS14330 +0.5 1.1 ferredoxin compare
HSERO_RS15165 +0.5 2.0 chemotaxis protein compare
HSERO_RS22015 +0.5 1.2 DNA-binding protein compare
HSERO_RS03575 +0.5 1.0 D,D-heptose 1,7-bisphosphate phosphatase compare
HSERO_RS18915 +0.5 1.9 AraC family transcriptional regulator compare
HSERO_RS10160 +0.5 2.2 flagellar biosynthesis sigma factor compare
HSERO_RS05085 +0.5 2.9 sugar ABC transporter permease compare
HSERO_RS09230 +0.5 1.6 2-dehydropantoate 2-reductase compare
HSERO_RS07620 +0.5 1.9 hypothetical protein compare
HSERO_RS10685 +0.5 1.6 serine endopeptidase compare
HSERO_RS09005 +0.5 1.9 type I secretion protein HlyD compare
HSERO_RS17270 +0.5 3.5 glucan biosynthesis protein D compare
HSERO_RS19900 +0.5 2.3 CAAX protease compare
HSERO_RS05560 +0.5 2.4 ABC transporter substrate-binding protein compare
HSERO_RS09160 +0.5 1.5 amidase compare
HSERO_RS01340 +0.5 3.0 sugar ABC transporter permease compare
HSERO_RS10325 +0.5 1.4 flagellar biosynthesis protein compare
HSERO_RS02005 +0.5 1.4 membrane protein compare
HSERO_RS08255 +0.5 2.3 hypothetical protein compare
HSERO_RS18600 +0.5 0.7 transcriptional regulator compare
HSERO_RS13685 +0.4 1.4 peptidase S1 compare
HSERO_RS10340 +0.4 1.5 flagellar biosynthesis protein FliS compare
HSERO_RS12685 +0.4 1.6 isochorismatase hydrolase compare
HSERO_RS06335 +0.4 1.2 chemotaxis protein CheY compare
HSERO_RS03135 +0.4 2.1 diguanylate cyclase compare
HSERO_RS20695 +0.4 3.0 methyltransferase compare
HSERO_RS02000 +0.4 2.1 magnesium transporter compare
HSERO_RS03025 +0.4 2.7 biopolymer transport transmembrane protein compare
HSERO_RS04455 +0.4 1.6 major tail tube protein compare
HSERO_RS04045 +0.4 1.2 pilus assembly protein compare
HSERO_RS10230 +0.4 3.0 flagellar hook-filament junction protein compare
HSERO_RS21185 +0.4 1.5 transcriptional regulator compare
HSERO_RS22810 +0.4 1.8 alcohol dehydrogenase compare
HSERO_RS21875 +0.4 1.3 endoribonuclease L-PSP compare
HSERO_RS05300 +0.4 1.4 isomerase compare
HSERO_RS04270 +0.4 1.4 membrane protein compare
HSERO_RS01455 +0.4 0.8 hypothetical protein compare
HSERO_RS08710 +0.4 2.3 methyltransferase compare
HSERO_RS06070 +0.4 1.2 methyl-accepting chemotaxis protein compare
HSERO_RS10655 +0.4 1.8 ribonuclease PH compare
HSERO_RS20035 +0.4 1.0 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
HSERO_RS16145 +0.4 1.7 leucyl/phenylalanyl-tRNA--protein transferase compare
HSERO_RS13750 +0.4 1.3 chromosome partitioning ATPase compare
HSERO_RS10120 +0.4 1.1 chemotaxis protein CheD compare
HSERO_RS22740 +0.4 1.9 ABC transporter permease compare
HSERO_RS19960 +0.4 2.8 LysR family transcriptional regulator compare
HSERO_RS18265 +0.4 1.8 ABC transporter permease compare
HSERO_RS20810 +0.4 2.2 amidophosphoribosyltransferase compare
HSERO_RS02580 +0.4 1.4 hypothetical protein compare
HSERO_RS15310 +0.4 2.1 sulfoxide reductase catalytic subunit YedY compare
HSERO_RS06785 +0.4 1.9 metal-dependent hydrolase compare
HSERO_RS07435 +0.4 1.4 formate dehydrogenase accessory protein FdhD compare
HSERO_RS18260 +0.4 1.7 branched-chain amino acid ABC transporter permease compare
HSERO_RS22325 +0.4 0.8 hypothetical protein compare
HSERO_RS11665 +0.4 0.9 nitrate ABC transporter ATP-binding protein compare
HSERO_RS06915 +0.4 0.8 hypothetical protein compare
HSERO_RS19630 +0.4 0.3 AMP nucleosidase compare
HSERO_RS04635 +0.4 1.9 acetyl-CoA acetyltransferase compare
HSERO_RS04450 +0.4 1.3 hypothetical protein compare
HSERO_RS16790 +0.4 1.2 carbonic anhydrase compare
HSERO_RS01945 +0.4 1.8 hypothetical protein compare
HSERO_RS14170 +0.4 2.0 thioredoxin compare
HSERO_RS20120 +0.4 2.6 peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins protein compare
HSERO_RS10845 +0.4 2.2 cyanophycin synthetase compare
HSERO_RS23030 +0.4 1.8 amino acid ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Herbaspirillum seropedicae SmR1 in carbon source experiments

For carbon source D-Glucose across organisms