Experiment set6IT092 for Pseudomonas fluorescens FW300-N2C3

Compare to:

4C survival; 360 hrs

200 most important genes:

  gene name fitness t score description  
AO356_02460 -5.2 -3.6 hypothetical protein compare
AO356_04055 -5.1 -3.5 hypothetical protein compare
AO356_26040 -4.7 -2.7 hypothetical protein compare
AO356_08930 -4.6 -3.2 heptose kinase compare
AO356_03495 -4.5 -4.2 phosphoglycolate phosphatase compare
AO356_06385 -4.3 -3.0 recombinase XerD compare
AO356_28205 -4.3 -7.7 hemolysin secretion protein D compare
AO356_08905 -4.2 -2.9 glycosyl transferase compare
AO356_03500 -4.2 -4.1 3-oxoacyl-ACP reductase compare
AO356_05995 -4.1 -3.8 hypothetical protein compare
AO356_09540 -4.1 -2.8 twin-arginine protein translocation system subunit TatC compare
AO356_15325 -4.0 -3.9 hypothetical protein compare
AO356_02875 -4.0 -6.1 peroxiredoxin compare
AO356_16955 -4.0 -5.4 disulfide bond formation protein B compare
AO356_28200 -4.0 -9.2 macrolide transporter compare
AO356_15260 -3.9 -2.3 dehydratase compare
AO356_09755 -3.9 -5.9 preprotein translocase subunit SecB compare
AO356_02465 -3.8 -2.6 carbonate dehydratase compare
AO356_11420 -3.8 -9.2 histidine kinase compare
AO356_20475 -3.7 -3.3 hypothetical protein compare
AO356_07210 -3.6 -3.5 histidine kinase compare
AO356_14295 -3.5 -2.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_03405 -3.5 -3.4 serine acetyltransferase compare
AO356_16070 -3.5 -5.8 poly(A) polymerase compare
AO356_14335 -3.4 -4.1 rRNA methyltransferase compare
AO356_06575 -3.4 -2.3 outer membrane protein assembly factor BamB compare
AO356_03350 -3.3 -6.3 glycosyl transferase compare
AO356_01270 -3.3 -7.3 (Fe-S)-binding protein compare
AO356_02420 -3.2 -5.6 cytochrome C oxidase Cbb3 compare
AO356_17070 -3.2 -2.2 cytochrome B compare
AO356_03415 -3.2 -6.9 oxidoreductase compare
AO356_03375 -3.2 -3.1 ExsB family protein compare
AO356_01275 -3.1 -6.0 GntR family transcriptional regulator compare
AO356_03400 -3.1 -4.8 aminotransferase DegT compare
AO356_14540 -3.1 -2.1 biotin--protein ligase compare
AO356_08895 -3.1 -2.1 GlcNAc-PI de-N-acetylase compare
AO356_21465 -3.1 -4.7 amidophosphoribosyltransferase compare
AO356_22585 -3.1 -2.1 MerR family transcriptional regulator compare
AO356_16050 -3.1 -2.1 glucose-6-phosphate isomerase compare
AO356_07915 -3.1 -3.0 exodeoxyribonuclease V subunit beta compare
AO356_02410 -3.0 -5.4 cytochrome C oxidase Cbb3 compare
AO356_12515 -3.0 -2.9 exodeoxyribonuclease III compare
AO356_07480 -3.0 -2.9 carbamoyl phosphate synthase large subunit compare
AO356_06990 -3.0 -4.1 toluene tolerance protein compare
AO356_17520 -3.0 -2.0 phosphoribosylformylglycinamidine synthase compare
AO356_24845 -3.0 -3.5 ATPase compare
AO356_17065 -3.0 -2.0 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_22795 -3.0 -3.5 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_22095 -2.9 -5.9 cupin compare
AO356_11315 -2.9 -2.0 shikimate dehydrogenase compare
AO356_09800 -2.9 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_09835 -2.9 -6.1 iron transporter compare
AO356_24335 -2.9 -2.3 type VI secretion protein compare
AO356_03620 -2.9 -4.3 cytochrome C compare
AO356_07000 -2.8 -2.8 ABC transporter permease compare
AO356_23500 -2.8 -7.7 TetR family transcriptional regulator compare
AO356_01750 -2.8 -3.3 ATP-dependent Clp protease proteolytic subunit compare
AO356_04560 -2.8 -2.7 serine peptidase compare
AO356_03715 -2.8 -8.0 chemotaxis protein CheA compare
AO356_08670 -2.8 -2.7 N-acetylmuramoyl-L-alanine amidase compare
AO356_09765 -2.8 -3.1 sulfurtransferase compare
AO356_06995 -2.7 -5.5 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_09795 -2.7 -1.9 imidazole glycerol phosphate synthase subunit HisF compare
AO356_14360 -2.7 -5.9 mannose-1-phosphate guanylyltransferase compare
AO356_09940 -2.7 -2.5 hypothetical protein compare
AO356_18065 -2.7 -3.0 7-carboxy-7-deazaguanine synthase compare
AO356_28695 -2.7 -3.1 IclR family transcriptional regulator compare
AO356_07110 -2.6 -5.4 ribonuclease G compare
AO356_20175 -2.6 -2.5 3-oxoacyl-ACP synthase compare
AO356_19090 -2.6 -3.1 phosphoribosylaminoimidazole synthetase compare
AO356_02190 -2.6 -5.5 hypothetical protein compare
AO356_03360 -2.6 -3.4 hypothetical protein compare
AO356_01740 -2.6 -3.0 DNA-binding protein compare
AO356_18020 -2.5 -3.8 ATP-dependent DNA helicase RuvA compare
AO356_14790 -2.5 -8.3 MFS transporter compare
AO356_20880 -2.5 -3.0 3-methylitaconate isomerase compare
AO356_10145 -2.5 -2.4 molecular chaperone Hsp33 compare
AO356_19425 -2.5 -2.4 lipid A biosynthesis lauroyl acyltransferase compare
AO356_14500 -2.5 -7.9 anhydro-N-acetylmuramic acid kinase compare
AO356_08640 -2.5 -3.4 membrane protease HflC compare
AO356_02290 -2.5 -3.3 TetR family transcriptional regulator compare
AO356_11610 -2.5 -2.4 glycerol acyltransferase compare
AO356_17075 -2.5 -2.4 cytochrome C compare
AO356_08880 -2.4 -4.9 glycosyl transferase compare
AO356_08610 -2.4 -7.1 exoribonuclease R compare
AO356_03420 -2.4 -7.5 UDP-N-acetyl-D-glucosamine dehydrogenase compare
AO356_08755 -2.4 -2.8 aspartyl protease compare
AO356_01255 -2.4 -9.1 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
AO356_08875 -2.4 -3.2 toluene tolerance protein compare
AO356_10185 -2.4 -7.4 glutamate--cysteine ligase compare
AO356_19080 -2.3 -8.5 dehydrogenase compare
AO356_07910 -2.3 -2.2 exodeoxyribonuclease V subunit alpha compare
AO356_19420 -2.3 -2.2 septum formation inhibitor compare
AO356_16600 -2.3 -2.1 malate:quinone oxidoreductase compare
AO356_04555 -2.3 -6.5 peptidase M48 compare
AO356_02285 -2.3 -5.0 beta-hexosaminidase compare
AO356_20875 -2.3 -7.0 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO356_11025 -2.2 -5.3 transcriptional regulator PhoU compare
AO356_25170 -2.2 -3.3 lipid carrier protein compare
AO356_08645 -2.2 -3.4 hypothetical protein compare
AO356_07105 -2.2 -7.5 hypothetical protein compare
AO356_05670 -2.2 -3.0 recombinase RecA compare
AO356_01745 -2.2 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_11585 -2.2 -4.1 lipid A biosynthesis lauroyl acyltransferase compare
AO356_24485 -2.2 -2.6 SAM-dependent methyltransferase compare
AO356_02405 -2.2 -9.7 cytochrome C oxidase Cbb3 compare
AO356_01015 -2.2 -2.7 peptidylprolyl isomerase compare
AO356_03365 -2.1 -3.8 UDP-N-acetylglucosamine 2-epimerase compare
AO356_18025 -2.1 -2.3 ATP-dependent DNA helicase RuvB compare
AO356_08320 -2.1 -3.8 copper resistance protein CopZ compare
AO356_14505 -2.1 -2.4 peptidase M23 compare
AO356_16185 -2.1 -4.0 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
AO356_25505 -2.0 -1.6 hypothetical protein compare
AO356_15420 -2.0 -4.0 hypothetical protein compare
AO356_19465 -2.0 -2.2 5-hydroxyisourate hydrolase [EC: 3.5.2.17] (from data) compare
AO356_03685 -2.0 -6.6 chemotaxis protein CheW compare
AO356_11990 -2.0 -9.2 DNA helicase II compare
AO356_04885 -2.0 -4.6 multidrug transporter compare
AO356_01525 -1.9 -5.4 arginine N-succinyltransferase compare
AO356_22150 -1.9 -7.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO356_17890 -1.9 -2.2 H-NS histone compare
AO356_24640 -1.9 -5.6 protein BatD compare
AO356_08870 -1.9 -6.9 polymerase compare
AO356_00995 -1.9 -4.3 carbon storage regulator CsrA compare
AO356_12725 -1.9 -4.1 recombinase XerC compare
AO356_00385 -1.9 -1.9 peptidylprolyl isomerase compare
AO356_14355 -1.9 -8.3 aminoglycoside phosphotransferase compare
AO356_08735 -1.8 -7.0 phosphoserine phosphatase compare
AO356_02800 -1.8 -3.0 transporter compare
AO356_04570 -1.8 -4.7 RNA polymerase subunit sigma compare
AO356_19050 -1.8 -2.5 cysteine synthase compare
AO356_20135 -1.8 -5.8 peptidase S49 compare
AO356_07495 -1.8 -2.5 molecular chaperone DnaJ compare
AO356_11205 -1.8 -5.3 copper-binding protein compare
AO356_05555 -1.7 -9.6 AmpG family muropeptide MFS transporter compare
AO356_18920 -1.7 -6.9 flagellar basal-body rod protein FlgC compare
AO356_14075 -1.7 -2.0 amino acid ABC transporter substrate-binding protein compare
AO356_03345 -1.7 -7.2 hypothetical protein compare
AO356_03855 -1.7 -7.3 AAA family ATPase compare
AO356_17950 -1.7 -6.1 histidine kinase compare
AO356_00665 -1.7 -2.6 IclR family transcriptional regulator compare
AO356_08890 -1.7 -5.4 glycosyltransferase compare
AO356_13195 -1.7 -6.8 thiol-disulfide isomerase compare
AO356_11450 -1.6 -1.9 cytochrome C compare
AO356_14105 -1.6 -1.9 glycine cleavage system protein R compare
AO356_06685 -1.6 -1.6 preprotein translocase subunit YajC compare
AO356_02250 -1.6 -5.8 pyridine nucleotide-disulfide oxidoreductase compare
AO356_21275 -1.6 -1.9 peptidase compare
AO356_02485 -1.6 -3.1 transcriptional regulator compare
AO356_00920 -1.6 -2.1 cold-shock protein compare
AO356_03780 -1.6 -1.6 flagellar motor switch protein compare
AO356_27180 -1.6 -3.0 hypothetical protein compare
AO356_02335 -1.6 -3.3 hypothetical protein compare
AO356_10880 -1.6 -1.3 hypothetical protein compare
AO356_13320 -1.6 -3.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO356_15640 -1.6 -5.7 cytochrome D ubiquinol oxidase subunit I compare
AO356_18325 -1.6 -7.1 argininosuccinate synthase compare
AO356_08660 -1.5 -5.6 tRNA dimethylallyltransferase compare
AO356_18910 -1.5 -6.8 chemotaxis protein compare
AO356_13445 -1.5 -1.1 dihydroorotase compare
AO356_11465 -1.5 -6.3 DNA polymerase I compare
AO356_03355 -1.5 -2.8 hypothetical protein compare
AO356_09815 -1.5 -4.6 imidazoleglycerol-phosphate dehydratase compare
AO356_08910 -1.5 -2.2 carbamoyltransferase compare
AO356_20935 -1.5 -2.7 antibiotic biosynthesis monooxygenase compare
AO356_17035 -1.5 -3.7 ATPase compare
AO356_16505 -1.5 -2.2 molybdopterin-synthase adenylyltransferase compare
AO356_03760 -1.5 -3.4 flagellar biosynthetic protein FliR compare
AO356_10170 -1.5 -2.0 chemotaxis protein CheY compare
AO356_19875 -1.5 -4.1 hypothetical protein compare
AO356_28710 -1.5 -1.7 aldehyde dehydrogenase compare
AO356_24245 -1.5 -2.3 siderophore-iron reductase FhuF compare
AO356_27485 -1.5 -2.7 hypothetical protein compare
AO356_04405 -1.5 -2.4 NADH dehydrogenase compare
AO356_25750 -1.4 -2.0 GntR family transcriptional regulator compare
AO356_13350 -1.4 -8.8 cell division protein FtsX compare
AO356_03865 -1.4 -6.3 flagellar export chaperone FliS compare
AO356_03920 -1.4 -5.4 flagellar basal body L-ring protein compare
AO356_03930 -1.4 -3.0 flagellar biosynthesis protein FlgF compare
AO356_22650 -1.4 -1.9 chemotaxis protein CheD compare
AO356_18900 -1.4 -4.5 flagellar biosynthesis protein FlgA compare
AO356_03180 -1.4 -3.2 CysB family transcriptional regulator compare
AO356_03795 -1.4 -5.3 flagellar hook-length control protein compare
AO356_12715 -1.4 -3.2 hypothetical protein compare
AO356_12780 -1.4 -4.3 argininosuccinate lyase compare
AO356_09565 -1.4 -5.3 glucan biosynthesis protein G compare
AO356_02325 -1.4 -1.4 3-ketoacyl-CoA thiolase compare
AO356_12640 -1.4 -1.9 cytochrome C compare
AO356_12380 -1.4 -5.0 ATP-dependent DNA helicase RecG compare
AO356_15645 -1.4 -3.9 ubiquinol oxidase subunit II compare
AO356_03095 -1.4 -4.2 protease HtpX compare
AO356_04525 -1.4 -3.7 hypothetical protein compare
AO356_07540 -1.4 -1.4 SsrA-binding protein compare
AO356_09560 -1.4 -6.8 glucosyltransferase MdoH compare
AO356_22005 -1.3 -2.8 CopG family transcriptional regulator compare
AO356_03740 -1.3 -3.7 flagellar biosynthesis protein FlhF compare
AO356_13770 -1.3 -3.6 ATP-dependent RNA helicase compare
AO356_03835 -1.3 -5.5 flagellar M-ring protein FliF compare
AO356_04875 -1.3 -4.8 antibiotic transporter compare
AO356_03900 -1.3 -5.8 flagellar biosynthesis protein FlgL compare


Specific Phenotypes

For 9 genes in this experiment