Experiment set6IT092 for Pseudomonas fluorescens FW300-N2C3

Compare to:

4C survival; 360 hrs

200 most detrimental genes:

  gene name fitness t score description  
AO356_19045 +5.0 41.4 chemotaxis protein CheY compare
AO356_00355 +4.6 33.1 chemotaxis protein CheY compare
AO356_00130 +1.7 3.7 XRE family transcriptional regulator compare
AO356_04575 +1.7 12.4 RNA polymerase subunit sigma compare
AO356_26025 +1.6 12.1 glycogen synthase compare
AO356_01515 +1.6 5.0 N-formylglutamate amidohydrolase compare
AO356_01600 +1.5 7.5 Cro/Cl family transcriptional regulator compare
AO356_06005 +1.5 5.3 zinc metallopeptidase RseP compare
AO356_27635 +1.5 7.2 histidine kinase compare
AO356_05885 +1.3 9.7 RNA polymerase sigma factor RpoS compare
AO356_11340 +1.3 2.3 NADH-flavin reductase compare
AO356_07055 +1.2 3.3 phosphocarrier protein HPr compare
AO356_27650 +1.2 8.1 chemotaxis protein CheY compare
AO356_16655 +1.1 7.5 2-alkenal reductase compare
AO356_02905 +1.0 7.0 amino acid ABC transporter substrate-binding protein compare
AO356_01500 +1.0 2.8 RpiR family transcriptional regulator compare
AO356_26915 +1.0 2.9 Fe-S oxidoreductase compare
AO356_22210 +1.0 3.3 hypothetical protein compare
AO356_27050 +0.9 2.3 hypothetical protein compare
AO356_18480 +0.9 1.6 translation initiation factor 2 compare
AO356_26005 +0.9 2.8 hypothetical protein compare
AO356_25045 +0.9 2.0 protein nirG compare
AO356_22520 +0.9 1.7 glyoxalase compare
AO356_05060 +0.8 2.3 gluconokinase compare
AO356_02955 +0.8 1.5 hypothetical protein compare
AO356_12905 +0.8 1.7 amino acid ABC transporter ATP-binding protein compare
AO356_25145 +0.8 2.3 pyridoxine 5'-phosphate oxidase compare
AO356_22950 +0.8 1.6 peptidylprolyl isomerase compare
AO356_10445 +0.8 1.6 serine protease compare
AO356_22905 +0.8 3.5 transcriptional regulator compare
AO356_06170 +0.8 3.8 hypothetical protein compare
AO356_24375 +0.8 2.5 type VI secretion protein compare
AO356_01420 +0.8 3.0 hypothetical protein compare
AO356_27640 +0.8 2.3 chemotaxis protein CheB compare
AO356_02215 +0.8 2.0 transcriptional regulator compare
AO356_03305 +0.8 1.6 ATPase compare
AO356_14050 +0.8 1.2 glutathione S-transferase compare
AO356_29355 +0.7 1.5 hypothetical protein compare
AO356_10350 +0.7 5.8 phosphoenolpyruvate-protein phosphotransferase compare
AO356_12610 +0.7 1.4 Fe-S oxidoreductase compare
AO356_30010 +0.7 2.4 transcriptional regulator compare
AO356_23060 +0.7 2.1 gluconolactonase compare
AO356_17420 +0.7 2.5 ketosteroid isomerase compare
AO356_09995 +0.7 4.3 LysR family transcriptional regulator compare
AO356_26780 +0.7 2.7 D-amino acid oxidase compare
AO356_07230 +0.7 2.2 hypothetical protein compare
AO356_28955 +0.7 2.4 hypothetical protein compare
AO356_01875 +0.7 1.1 Cro/Cl family transcriptional regulator compare
AO356_20335 +0.7 1.5 hypothetical protein compare
AO356_06615 +0.7 1.0 FeS assembly protein IscX compare
AO356_08375 +0.7 1.5 acetyltransferase compare
AO356_13465 +0.7 2.0 hypothetical protein compare
AO356_00360 +0.7 3.1 GNAT family acetyltransferase compare
AO356_24730 +0.7 1.8 hypothetical protein compare
AO356_01245 +0.7 4.1 glycogen branching protein compare
AO356_26090 +0.7 2.3 Vanillate O-demethylase oxidoreductase compare
AO356_30015 +0.7 2.0 histidine kinase compare
AO356_08440 +0.7 2.4 hypothetical protein compare
AO356_15590 +0.7 2.5 shikimate dehydrogenase compare
AO356_00580 +0.7 5.3 formyl transferase compare
AO356_26330 +0.7 1.7 Lipid A biosynthesis, N-terminal compare
AO356_00930 +0.7 3.0 hypothetical protein compare
AO356_06940 +0.7 2.4 16S rRNA methyltransferase compare
AO356_25245 +0.7 1.8 anaerobic ribonucleoside-triphosphate reductase activating protein compare
AO356_05550 +0.7 1.4 DNA base-flipping protein YbaZ compare
AO356_13395 +0.7 1.3 non-canonical purine NTP pyrophosphatase compare
AO356_16350 +0.7 2.2 hypothetical protein compare
AO356_01915 +0.7 1.3 hypothetical protein compare
AO356_26905 +0.6 2.6 AraC family transcriptional regulator compare
AO356_08400 +0.6 0.9 chaperone modulatory protein CbpM compare
AO356_28125 +0.6 1.7 hypothetical protein compare
AO356_28475 +0.6 1.6 hypothetical protein compare
AO356_01410 +0.6 1.3 hypothetical protein compare
AO356_13920 +0.6 1.8 electron transfer flavoprotein subunit beta compare
AO356_14160 +0.6 2.2 pyrroloquinoline quinone biosynthesis protein PqqE compare
AO356_23990 +0.6 1.0 amino acid ABC transporter compare
AO356_22745 +0.6 2.1 2-nitropropane dioxygenase compare
AO356_19480 +0.6 2.4 lysine transporter LysE compare
AO356_19240 +0.6 1.0 cupin compare
AO356_24620 +0.6 1.8 glutathione S-transferase compare
AO356_03670 +0.6 2.7 flagellar biosynthesis protein FlhB compare
AO356_12895 +0.6 5.3 polyphosphate kinase compare
AO356_01185 +0.6 2.7 glycosyl transferase family 2 compare
AO356_27155 +0.6 2.1 damage-inducible protein DinB compare
AO356_00570 +0.6 2.2 phosphoglycerate mutase compare
AO356_16320 +0.6 1.6 hypothetical protein compare
AO356_27915 +0.6 0.8 salicylaldehyde dehydrogenase compare
AO356_18630 +0.6 2.8 methylaspartate mutase compare
AO356_29125 +0.6 1.1 vanillate monooxygenase compare
AO356_13135 +0.6 4.1 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
AO356_13565 +0.6 2.4 16S rRNA methyltransferase compare
AO356_26095 +0.6 1.5 Rieske (2Fe-2S) protein compare
AO356_02145 +0.6 2.8 hypothetical protein compare
AO356_19525 +0.6 2.2 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific compare
AO356_01840 +0.6 1.2 uracil permease compare
AO356_05215 +0.6 2.9 glucokinase compare
AO356_09125 +0.6 2.4 GntR family transcriptional regulator compare
AO356_03435 +0.6 1.4 integration host factor subunit beta compare
AO356_12485 +0.6 1.9 DNA-directed RNA polymerase subunit omega compare
AO356_02025 +0.6 0.9 hypothetical protein compare
AO356_17220 +0.6 1.4 hypothetical protein compare
AO356_28520 +0.5 1.7 multidrug MFS transporter compare
AO356_08055 +0.5 1.5 copper resistance protein CopZ compare
AO356_02310 +0.5 1.7 PasA protein compare
AO356_26010 +0.5 3.4 maltooligosyl trehalose synthase compare
AO356_19555 +0.5 2.1 hypothetical protein compare
AO356_04030 +0.5 1.1 selenoprotein compare
AO356_30120 +0.5 1.6 sarcosine oxidase compare
AO356_26595 +0.5 2.1 antibiotic biosynthesis monooxygenase compare
AO356_24520 +0.5 1.7 ArsR family transcriptional regulator compare
AO356_05510 +0.5 2.2 succinylglutamate desuccinylase compare
AO356_25365 +0.5 1.9 diguanylate cyclase compare
AO356_09780 +0.5 2.2 peptidase S41 compare
AO356_07730 +0.5 1.4 hypothetical protein compare
AO356_24405 +0.5 1.7 tRNA hydroxylase compare
AO356_28290 +0.5 1.2 LuxR family transcriptional regulator compare
AO356_26955 +0.5 1.8 carboxylate--amine ligase compare
AO356_29525 +0.5 1.4 transcriptional regulator compare
AO356_08380 +0.5 1.4 acetyltransferase compare
AO356_22320 +0.5 2.1 thioesterase compare
AO356_09185 +0.5 0.8 hypothetical protein compare
AO356_27295 +0.5 2.9 hypothetical protein compare
AO356_23250 +0.5 1.3 hypothetical protein compare
AO356_21220 +0.5 1.2 peptide ABC transporter substrate-binding protein compare
AO356_26000 +0.5 3.8 glycogen debranching protein compare
AO356_23640 +0.5 1.3 hydrolase TatD compare
AO356_12625 +0.5 0.7 cytochrome C2 compare
AO356_13425 +0.5 1.3 hypothetical protein compare
AO356_30000 +0.5 1.3 hypothetical protein compare
AO356_03210 +0.5 0.9 hypothetical protein compare
AO356_04970 +0.5 2.4 aspartate-semialdehyde dehydrogenase compare
AO356_08385 +0.5 1.1 urease subunit beta compare
AO356_01045 +0.5 2.2 hypothetical protein compare
AO356_27875 +0.5 1.0 ketosteroid isomerase compare
AO356_14400 +0.5 2.2 polyamine ABC transporter permease compare
AO356_22335 +0.5 2.7 LysR family transcriptional regulator compare
AO356_06580 +0.5 0.6 GTP-binding protein compare
AO356_09555 +0.5 1.4 hypothetical protein compare
AO356_09600 +0.5 1.5 histidine ammonia-lyase compare
AO356_04460 +0.5 1.1 sugar translocase compare
AO356_22815 +0.5 1.3 lactoylglutathione lyase compare
AO356_24215 +0.5 1.6 chemotaxis protein CheC compare
AO356_21260 +0.5 0.7 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO356_03100 +0.5 2.9 thiopurine S-methyltransferase compare
AO356_25800 +0.5 1.7 prevent-host-death protein compare
AO356_17465 +0.5 1.9 DNA polymerase III subunit chi compare
AO356_01930 +0.5 2.2 hypothetical protein compare
AO356_11345 +0.5 1.8 4,5-dioxygenase compare
AO356_15665 +0.5 1.1 large-conductance mechanosensitive channel compare
AO356_09210 +0.5 2.1 3-oxoacyl-ACP synthase compare
AO356_10935 +0.5 1.1 hypothetical protein compare
AO356_20670 +0.5 1.9 3-oxoacyl-ACP reductase compare
AO356_01265 +0.5 2.1 hypothetical protein compare
AO356_03225 +0.5 2.2 esterase compare
AO356_06855 +0.5 2.1 peptide ABC transporter ATP-binding protein compare
AO356_18715 +0.5 1.0 L-Arginine ABC transporter, ATPase component (from data) compare
AO356_07270 +0.5 1.5 peptide ABC transporter ATP-binding protein compare
AO356_11385 +0.5 1.7 ABC transporter permease compare
AO356_19315 +0.5 1.0 hypothetical protein compare
AO356_05855 +0.5 1.6 pyocin R2, holin compare
AO356_25120 +0.5 1.0 hypothetical protein compare
AO356_16725 +0.5 1.0 HopJ type III effector protein compare
AO356_11115 +0.5 2.3 anhydrase compare
AO356_19210 +0.5 1.2 hypothetical protein compare
AO356_25550 +0.5 1.8 flavin oxidoreductase compare
AO356_16135 +0.5 2.0 competence protein TfoX compare
AO356_06065 +0.5 1.0 ArsC family transcriptional regulator compare
AO356_08830 +0.4 1.8 multidrug DMT transporter compare
AO356_02715 +0.4 1.8 type III secretion effector protein compare
AO356_01545 +0.4 0.7 hypothetical protein compare
AO356_29865 +0.4 2.4 chemotaxis protein compare
AO356_28740 +0.4 1.0 oxidoreductase compare
AO356_08215 +0.4 2.0 tRNA-dihydrouridine synthase B compare
AO356_05110 +0.4 1.4 alpha/beta hydrolase compare
AO356_20785 +0.4 0.8 hypothetical protein compare
AO356_09170 +0.4 1.5 glycosyl transferase compare
AO356_23395 +0.4 1.2 ABC transporter permease compare
AO356_02785 +0.4 1.0 uroporphyrin-III methyltransferase compare
AO356_27010 +0.4 3.1 serine protease compare
AO356_03105 +0.4 2.1 aromatic ring-opening dioxygenase LigB compare
AO356_19795 +0.4 1.4 glycerol-3-phosphate dehydrogenase compare
AO356_16520 +0.4 1.0 Fe-S-oxidoreductase compare
AO356_21705 +0.4 1.1 response regulator compare
AO356_28505 +0.4 1.2 sugar ABC transporter substrate-binding protein compare
AO356_03205 +0.4 2.9 acetyltransferase compare
AO356_15540 +0.4 2.9 histone deacetylase superfamily protein compare
AO356_02945 +0.4 1.5 molybdenum cofactor sulfurase compare
AO356_27035 +0.4 2.4 serine 3-dehydrogenase compare
AO356_27965 +0.4 0.9 benzaldehyde dehydrogenase compare
AO356_25400 +0.4 1.4 acetylornithine deacetylase compare
AO356_01485 +0.4 1.6 transcriptional regulator compare
AO356_23115 +0.4 1.2 hypothetical protein compare
AO356_15175 +0.4 0.9 hypothetical protein compare
AO356_04935 +0.4 1.2 3-oxoadipate--succinyl-CoA transferase compare
AO356_23995 +0.4 1.6 amino acid ABC transporter compare
AO356_09805 +0.4 1.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
AO356_13205 +0.4 1.2 hypothetical protein compare
AO356_12685 +0.4 2.3 magnesium chelatase compare
AO356_10015 +0.4 3.4 protein BsmA compare
AO356_03265 +0.4 2.1 chemotaxis protein compare


Specific Phenotypes

For 9 genes in this experiment