Experiment set6IT092 for Pantoea sp. MT58

Compare to:

Survival; Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

200 most important genes:

  gene name fitness t score description  
IAI47_00760 -5.0 -3.4 envelope stress response regulator transcription factor CpxR compare
IAI47_05155 -2.8 -14.2 polyphosphate kinase 1 compare
IAI47_04705 -2.8 -1.5 hypothetical protein compare
IAI47_18215 -2.7 -2.4 Trk system potassium transporter TrkH compare
IAI47_19945 -2.6 -0.8 hypothetical protein compare
IAI47_20600 -2.3 -1.8 hypothetical protein compare
IAI47_15970 -2.2 -2.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_14325 -2.2 -1.8 ribosome-associated protein YbcJ compare
IAI47_00770 -2.2 -1.1 general stress protein compare
IAI47_07470 -2.2 -2.9 AlpA family transcriptional regulator compare
IAI47_04335 -2.1 -3.7 tRNA-Arg compare
IAI47_20595 -2.1 -3.4 GhoT/OrtT family toxin compare
IAI47_04775 -2.0 -2.3 SIR2 family protein compare
IAI47_00735 -2.0 -1.9 protein-export chaperone SecB compare
IAI47_18775 -1.8 -6.2 hypothetical protein compare
IAI47_00780 -1.8 -3.9 6-phosphofructokinase compare
IAI47_13625 -1.8 -7.5 CDF family zinc transporter ZitB compare
IAI47_21765 -1.8 -2.2 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_04300 -1.7 -7.1 recombinase RecA compare
IAI47_15635 -1.7 -2.4 RNA polymerase-binding protein DksA compare
IAI47_19935 -1.7 -3.2 hypothetical protein compare
IAI47_07020 -1.6 -1.0 hypothetical protein compare
IAI47_21600 -1.6 -2.3 EamA family transporter compare
IAI47_14295 -1.6 -3.5 hypothetical protein compare
IAI47_21655 -1.6 -0.8 LacI family DNA-binding transcriptional regulator compare
IAI47_02495 -1.6 -4.1 hypothetical protein compare
IAI47_08045 -1.6 -1.9 NUDIX domain-containing protein compare
IAI47_05755 -1.6 -3.7 hypothetical protein compare
IAI47_16995 -1.5 -2.1 protein YrbN compare
IAI47_03375 -1.5 -7.2 peptide chain release factor 3 compare
IAI47_08085 -1.5 -2.8 helix-turn-helix domain-containing protein compare
IAI47_07485 -1.5 -2.9 DUF4756 family protein compare
IAI47_07355 -1.5 -5.0 winged helix-turn-helix domain-containing protein compare
IAI47_13355 -1.5 -8.6 DMT family transporter compare
IAI47_01530 -1.5 -5.9 DUF1145 family protein compare
IAI47_11420 -1.5 -1.1 hypothetical protein compare
IAI47_08065 -1.5 -4.1 acyltransferase compare
IAI47_06655 -1.5 -3.0 1-phosphofructokinase compare
IAI47_07450 -1.5 -2.2 winged helix-turn-helix domain-containing protein compare
IAI47_07480 -1.4 -2.2 hypothetical protein compare
IAI47_11510 -1.4 -3.8 hypothetical protein compare
IAI47_11480 -1.4 -1.9 hypothetical protein compare
IAI47_02255 -1.4 -8.8 DUF1992 domain-containing protein compare
IAI47_03440 -1.4 -2.5 general stress protein compare
IAI47_05660 -1.4 -5.5 serine protease compare
IAI47_11515 -1.4 -1.2 hypothetical protein compare
IAI47_14230 -1.4 -4.5 DotU family type IV/VI secretion system protein compare
IAI47_11475 -1.3 -0.8 hypothetical protein compare
IAI47_02260 -1.3 -6.2 Zn(2+)-responsive transcriptional regulator compare
IAI47_05090 -1.3 -3.0 hypothetical protein compare
IAI47_19825 -1.3 -4.4 EAL domain-containing protein compare
IAI47_16085 -1.3 -0.8 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_21450 -1.3 -1.1 general stress protein compare
IAI47_00505 -1.3 -5.9 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI47_07490 -1.3 -1.7 DNA-binding protein compare
IAI47_08040 -1.3 -2.2 hypothetical protein compare
IAI47_12260 -1.2 -3.2 hypothetical protein compare
IAI47_00300 -1.2 -1.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_16095 -1.2 -3.0 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_03820 -1.2 -2.3 site-specific tyrosine recombinase XerD compare
IAI47_02990 -1.2 -6.3 hypothetical protein compare
IAI47_00940 -1.2 -4.9 HTH-type transcriptional repressor FabR compare
IAI47_07025 -1.2 -4.6 glycosyltransferase family 4 protein compare
IAI47_08680 -1.2 -4.2 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI47_00460 -1.2 -1.8 glutamate--ammonia ligase compare
IAI47_02600 -1.2 -7.7 FtsH protease activity modulator HflK compare
IAI47_11360 -1.2 -1.7 hypothetical protein compare
IAI47_07330 -1.2 -5.6 hypothetical protein compare
IAI47_02850 -1.1 -6.6 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
IAI47_06675 -1.1 -1.8 DUF1232 domain-containing protein compare
IAI47_03550 -1.1 -5.5 membrane-bound lytic murein transglycosylase MltC compare
IAI47_01610 -1.1 -4.3 glycerophosphodiester phosphodiesterase compare
IAI47_21665 -1.1 -1.4 DUF333 domain-containing protein compare
IAI47_20175 -1.1 -3.9 ABC transporter ATP-binding protein compare
IAI47_08910 -1.1 -2.4 DUF1480 family protein compare
IAI47_11500 -1.1 -1.8 type VI secretion system tip protein VgrG compare
IAI47_08050 -1.1 -4.8 hypothetical protein compare
IAI47_18480 -1.1 -6.9 lipid III flippase WzxE compare
IAI47_17965 -1.1 -6.3 glucose-6-phosphate isomerase compare
IAI47_10840 -1.1 -1.7 pyruvate kinase PykF compare
IAI47_17020 -1.1 -1.9 30S ribosome-binding factor RbfA compare
IAI47_07520 -1.1 -6.2 MobA/MobL family protein compare
IAI47_09630 -1.1 -3.0 type VI secretion system tube protein Hcp compare
IAI47_04465 -1.1 -8.8 MFS transporter compare
IAI47_16520 -1.1 -5.7 hypothetical protein compare
IAI47_10835 -1.1 -0.6 tRNA-Val compare
IAI47_07455 -1.1 -3.0 hypothetical protein compare
IAI47_17645 -1.1 -3.2 hypothetical protein compare
IAI47_03590 -1.1 -5.0 YggT family protein compare
IAI47_17580 -1.1 -4.7 hypothetical protein compare
IAI47_07930 -1.1 -0.7 DUF2158 domain-containing protein compare
IAI47_21240 -1.1 -3.9 hypothetical protein compare
IAI47_01825 -1.1 -4.6 two-component system sensor histidine kinase EnvZ compare
IAI47_18015 -1.1 -7.1 homoserine O-succinyltransferase compare
IAI47_05845 -1.1 -3.9 hypothetical protein compare
IAI47_11890 -1.1 -4.5 DUF1493 family protein compare
IAI47_08765 -1.1 -3.5 PTS mannose/fructose/sorbose transporter subunit IIC compare
IAI47_17185 -1.1 -4.7 RNA polymerase factor sigma-54 compare
IAI47_19320 -1.1 -3.9 LysE family translocator compare
IAI47_14205 -1.0 -4.6 hypothetical protein compare
IAI47_12885 -1.0 -4.8 pyruvate formate lyase 1-activating protein compare
IAI47_01345 -1.0 -6.1 oligopeptidase A compare
IAI47_05690 -1.0 -3.5 hypothetical protein compare
IAI47_06010 -1.0 -3.3 hypothetical protein compare
IAI47_00655 -1.0 -1.4 glycosyltransferase family 4 protein compare
IAI47_16810 -1.0 -7.0 hypothetical protein compare
IAI47_00465 -1.0 -0.7 ribosome-dependent GTPase TypA compare
IAI47_06425 -1.0 -5.1 GNAT family N-acetyltransferase compare
IAI47_21680 -1.0 -2.4 hypothetical protein compare
IAI47_01475 -1.0 -3.9 MurR/RpiR family transcriptional regulator compare
IAI47_05080 -1.0 -3.0 zinc ribbon domain-containing protein compare
IAI47_04690 -1.0 -3.8 hypothetical protein compare
IAI47_14070 -1.0 -4.1 GNAT family N-acetyltransferase compare
IAI47_09040 -1.0 -0.5 NAD-dependent epimerase compare
IAI47_11425 -1.0 -2.6 hypothetical protein compare
IAI47_16395 -1.0 -5.1 DUF1435 domain-containing protein compare
IAI47_20480 -1.0 -2.9 YfiR family protein compare
IAI47_04755 -0.9 -3.8 AlpA family transcriptional regulator compare
IAI47_11445 -0.9 -2.9 ankyrin repeat domain-containing protein compare
IAI47_17120 -0.9 -2.3 BolA family iron metabolism protein IbaG compare
IAI47_09045 -0.9 -3.7 DNA-binding transcriptional regulator H-NS compare
IAI47_19550 -0.9 -1.2 DUF1471 domain-containing protein compare
IAI47_12270 -0.9 -3.5 YceK/YidQ family lipoprotein compare
IAI47_21595 -0.9 -4.5 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
IAI47_06135 -0.9 -1.8 phosphohistidine phosphatase SixA compare
IAI47_11375 -0.9 -0.8 hypothetical protein compare
IAI47_02090 -0.9 -2.6 elongation factor Tu compare
IAI47_05685 -0.9 -4.3 hypothetical protein compare
IAI47_12355 -0.9 -1.4 hydroxymyristoyl-ACP dehydratase compare
IAI47_19525 -0.9 -4.2 hypothetical protein compare
IAI47_21505 -0.9 -3.0 DUF2256 domain-containing protein compare
IAI47_08610 -0.9 -2.1 tail fiber assembly protein compare
IAI47_09305 -0.9 -1.6 cyclic di-GMP phosphodiesterase compare
IAI47_08450 -0.9 -0.9 Holliday junction branch migration DNA helicase RuvB compare
IAI47_18840 -0.9 -1.9 membrane protein insertion efficiency factor YidD compare
IAI47_16515 -0.9 -4.8 hypothetical protein compare
IAI47_08975 -0.9 -2.4 NAD(P)H nitroreductase compare
IAI47_01350 -0.9 -4.1 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ compare
IAI47_06595 -0.9 -1.4 hypothetical protein compare
IAI47_20680 -0.9 -2.4 hypothetical protein compare
IAI47_21545 -0.9 -5.3 SgcJ/EcaC family oxidoreductase compare
IAI47_05745 -0.9 -1.1 protease FtsH-inhibitory lysogeny factor CIII compare
IAI47_04800 -0.9 -0.6 RnfH family protein compare
IAI47_07030 -0.9 -3.1 HAD family hydrolase compare
IAI47_18265 -0.9 -1.7 Sec-independent protein translocase subunit TatB compare
IAI47_11235 -0.9 -4.1 gamma-glutamylcyclotransferase compare
IAI47_01535 -0.9 -2.7 16S rRNA (guanine(966)-N(2))-methyltransferase compare
IAI47_15150 -0.9 -4.2 DUF3289 family protein compare
IAI47_05120 -0.9 -1.9 DUF2158 domain-containing protein compare
IAI47_19960 -0.9 -4.1 lipid IV(A) palmitoyltransferase PagP compare
IAI47_02475 -0.9 -4.7 AaeX family protein compare
IAI47_04695 -0.9 -3.3 hypothetical protein compare
IAI47_07745 -0.9 -3.4 Brp/Blh family beta-carotene 15,15'-dioxygenase compare
IAI47_21675 -0.9 -3.0 helix-turn-helix domain-containing protein compare
IAI47_05200 -0.8 -3.2 arsenate reductase (glutaredoxin) compare
IAI47_17815 -0.8 -6.9 excinuclease ABC subunit UvrA compare
IAI47_12265 -0.8 -3.1 secY/secA suppressor protein compare
IAI47_15880 -0.8 -1.8 DNA gyrase inhibitor YacG compare
IAI47_07360 -0.8 -1.2 hypothetical protein compare
IAI47_07005 -0.8 -2.1 glycosyltransferase family 4 protein compare
IAI47_01820 -0.8 -2.3 two-component system response regulator OmpR compare
IAI47_15980 -0.8 -4.4 catabolite repressor/activator compare
IAI47_19490 -0.8 -3.0 DUF4102 domain-containing protein compare
IAI47_11770 -0.8 -3.2 flagellar brake protein compare
IAI47_19075 -0.8 -4.6 MBL fold metallo-hydrolase compare
IAI47_09145 -0.8 -2.8 UPF0259 family protein compare
IAI47_00500 -0.8 -5.0 ATP-dependent DNA helicase RecG compare
IAI47_12925 -0.8 -2.0 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_15155 -0.8 -2.5 DUF943 family protein compare
IAI47_02265 -0.8 -3.2 alternative ribosome-rescue factor A compare
IAI47_10300 -0.8 -2.9 helix-turn-helix domain-containing protein compare
IAI47_02370 -0.8 -6.3 amino acid ABC transporter permease compare
IAI47_11470 -0.8 -1.8 IS1 family transposase compare
IAI47_15350 -0.8 -5.6 endonuclease/exonuclease/phosphatase family protein compare
IAI47_09895 -0.8 -2.2 GNAT family N-acetyltransferase compare
IAI47_07465 -0.8 -4.8 hypothetical protein compare
IAI47_19005 -0.8 -4.5 DUF1275 domain-containing protein compare
IAI47_16620 -0.8 -5.4 hypothetical protein compare
IAI47_02605 -0.8 -4.0 protease modulator HflC compare
IAI47_04890 -0.8 -4.7 DNA repair protein RecO compare
IAI47_00430 -0.8 -6.1 DNA polymerase I compare
IAI47_09625 -0.8 -2.5 transporter substrate-binding domain-containing protein compare
IAI47_03125 -0.8 -5.6 glutathionylspermidine synthase family protein compare
IAI47_10690 -0.8 -2.0 hypothetical protein compare
IAI47_18145 -0.8 -1.5 elongation factor Tu compare
IAI47_14275 -0.8 -3.5 GPW/gp25 family protein compare
IAI47_12770 -0.8 -2.9 MBL fold metallo-hydrolase compare
IAI47_02095 -0.8 -2.8 bacterioferritin-associated ferredoxin compare
IAI47_05830 -0.8 -1.8 hypothetical protein compare
IAI47_07535 -0.8 -3.8 site-specific DNA-methyltransferase compare
IAI47_03490 -0.8 -2.3 hypothetical protein compare
IAI47_11045 -0.8 -2.4 hypothetical protein compare
IAI47_07280 -0.8 -2.5 RluA family pseudouridine synthase compare
IAI47_19930 -0.8 -2.2 adhesin compare
IAI47_19950 -0.8 -3.0 SDR family oxidoreductase compare
IAI47_10340 -0.8 -2.6 mannose-6-phosphate isomerase compare
IAI47_17110 -0.8 -5.0 helix-turn-helix domain-containing protein compare
IAI47_10365 -0.8 -3.3 adenosine deaminase compare
IAI47_08635 -0.8 -1.9 multidrug/spermidine efflux SMR transporter subunit MdtI compare
IAI47_03680 -0.8 -4.4 transketolase compare


Specific Phenotypes

For 8 genes in this experiment

For survival Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 in Pantoea sp. MT58

For survival Treatment=FW300 (pH7.4) with 0.2 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 across organisms