Experiment set6IT091 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Bile salts 0.0125 M

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3666 -5.4 -3.7 InaA protein compare
Pf6N2E2_5006 -5.3 -6.3 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4584 -5.2 -2.9 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3839 -5.1 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3237 -5.0 -2.4 hypothetical protein compare
Pf6N2E2_3791 -4.9 -7.5 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_3842 -4.7 -4.5 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_1705 -4.6 -1.1 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_919 -4.6 -1.9 FIG00954373: hypothetical protein compare
Pf6N2E2_2506 -4.6 -3.1 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_2473 -4.5 -1.1 Major outer membrane lipoprotein I compare
Pf6N2E2_75 -4.5 -3.2 Colicin V production protein compare
Pf6N2E2_4996 -4.5 -3.1 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_4417 -4.4 -4.6 Protein of unknown function DUF484 compare
Pf6N2E2_5150 -4.4 -3.1 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3833 -4.4 -5.6 hypothetical protein compare
Pf6N2E2_623 -4.4 -1.1 FIG00954674: hypothetical protein compare
Pf6N2E2_4451 -4.4 -6.0 FIG139438: lipoprotein B compare
Pf6N2E2_4160 -4.4 -1.1 Cytochrome c5 compare
Pf6N2E2_4206 -4.3 -1.8 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_3834 -4.3 -7.7 Lipoprotein NlpD compare
Pf6N2E2_3753 -4.3 -16.6 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_4585 -4.2 -13.6 Cell division protein FtsX compare
Pf6N2E2_4181 -4.2 -1.0 Organic hydroperoxide resistance protein compare
Pf6N2E2_1169 -4.2 -2.0 TnpR protein compare
Pf6N2E2_2507 -4.2 -4.1 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_3252 -4.2 -5.7 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3095 -4.1 -1.0 hypothetical protein compare
Pf6N2E2_2646 -4.1 -1.8 FIG00953416: hypothetical protein compare
Pf6N2E2_5014 -4.1 -1.0 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_5704 -4.1 -6.5 Transcriptional regulatory protein PhoP compare
Pf6N2E2_5499 -4.0 -1.0 hypothetical protein compare
Pf6N2E2_3841 -4.0 -4.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_3021 -4.0 -1.0 hypothetical protein compare
Pf6N2E2_2127 -4.0 -3.9 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3550 -4.0 -2.9 Urea ABC transporter, ATPase protein UrtD compare
Pf6N2E2_5312 -3.9 -1.4 FIG00964214: hypothetical protein compare
Pf6N2E2_3303 -3.9 -3.8 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3617 -3.8 -5.2 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_4075 -3.8 -4.5 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_2509 -3.8 -1.3 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_1893 -3.8 -2.5 hypothetical protein compare
Pf6N2E2_3328 -3.8 -1.9 transcriptional regulator compare
Pf6N2E2_5183 -3.8 -13.4 Paraquat-inducible protein B compare
Pf6N2E2_445 -3.8 -6.2 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_1116 -3.7 -1.6 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_6058 -3.7 -5.7 FIG139976: hypothetical protein compare
Pf6N2E2_2940 -3.7 -6.1 OmpA family protein compare
Pf6N2E2_3326 -3.7 -1.3 hypothetical protein compare
Pf6N2E2_4743 -3.7 -0.9 hypothetical protein compare
Pf6N2E2_3610 -3.7 -5.5 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_2384 -3.7 -4.4 CmpX compare
Pf6N2E2_2510 -3.7 -2.5 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_3134 -3.6 -0.9 hypothetical protein compare
Pf6N2E2_5178 -3.6 -2.2 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_5181 -3.6 -10.9 Paraquat-inducible protein A compare
Pf6N2E2_282 -3.6 -1.2 GNAT family acetyltransferase YjcF compare
Pf6N2E2_5671 -3.6 -2.5 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_2824 -3.5 -9.9 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_942 -3.5 -1.5 Mll6465 protein compare
Pf6N2E2_2508 -3.5 -2.4 hypothetical protein compare
Pf6N2E2_5956 -3.5 -6.7 FIG004453: protein YceG like compare
Pf6N2E2_5816 -3.5 -1.2 Smr domain protein compare
Pf6N2E2_3264 -3.5 -2.6 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3792 -3.4 -4.9 Glucans biosynthesis protein G precursor compare
Pf6N2E2_4362 -3.4 -4.2 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_2693 -3.4 -1.2 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_4999 -3.4 -7.3 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_3665 -3.4 -0.8 serine/threonine protein kinase compare
Pf6N2E2_344 -3.4 -2.7 hypothetical protein compare
Pf6N2E2_178 -3.4 -0.8 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_495 -3.3 -4.2 YD repeat protein compare
Pf6N2E2_5226 -3.3 -1.1 FIG00955589: hypothetical protein compare
Pf6N2E2_2962 -3.3 -2.2 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_1099 -3.3 -2.2 Hypothetical protein GlcG in glycolate utilization operon compare
Pf6N2E2_4369 -3.3 -2.2 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4928 -3.2 -1.1 Permeases of the major facilitator superfamily compare
Pf6N2E2_5245 -3.2 -7.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2825 -3.2 -2.2 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_3253 -3.2 -4.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf6N2E2_5316 -3.2 -1.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3251 -3.2 -9.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_3461 -3.2 -1.3 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2425 -3.2 -2.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5733 -3.2 -3.8 NLP/P60 family protein compare
Pf6N2E2_3661 -3.2 -2.2 hypothetical protein compare
Pf6N2E2_4077 -3.1 -2.1 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_5508 -3.1 -1.7 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_460 -3.1 -3.0 Glycerate kinase (EC 2.7.1.31) compare
Pf6N2E2_4155 -3.1 -7.9 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2261 -3.1 -2.1 VacJ-like lipoprotein precursor compare
Pf6N2E2_3738 -3.1 -2.7 General secretion pathway protein L compare
Pf6N2E2_3258 -3.1 -2.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2218 -3.1 -2.1 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5544 -3.1 -9.4 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_3171 -3.1 -1.1 hypothetical protein compare
Pf6N2E2_2253 -3.1 -3.5 hypothetical protein compare
Pf6N2E2_5425 -3.0 -1.1 hypothetical protein compare
Pf6N2E2_1424 -3.0 -1.0 transcriptional regulator, TetR family compare
Pf6N2E2_5252 -3.0 -1.7 FIG00956396: hypothetical protein compare
Pf6N2E2_3947 -3.0 -1.7 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_1676 -3.0 -1.8 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_5111 -3.0 -2.1 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_5103 -3.0 -1.0 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_5182 -3.0 -8.1 Paraquat-inducible protein A compare
Pf6N2E2_673 -2.9 -2.4 Probable permease of ABC transporter compare
Pf6N2E2_3515 -2.9 -6.2 Probable transmembrane protein compare
Pf6N2E2_2574 -2.9 -1.4 Flagellar synthesis regulator FleN compare
Pf6N2E2_4352 -2.9 -3.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4611 -2.9 -4.4 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2823 -2.9 -5.1 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_3876 -2.9 -5.1 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_2480 -2.9 -1.0 FIG00957636: hypothetical protein compare
Pf6N2E2_5727 -2.9 -6.0 FIG00955360: hypothetical protein compare
Pf6N2E2_3074 -2.9 -1.0 FIG00960973: hypothetical protein compare
Pf6N2E2_5430 -2.9 -8.2 Transglycosylase, Slt family compare
Pf6N2E2_4205 -2.8 -4.2 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2636 -2.8 -2.7 FIG027190: Putative transmembrane protein compare
Pf6N2E2_3770 -2.8 -1.7 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_3658 -2.8 -6.3 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2586 -2.8 -1.3 Hpt domain protein compare
Pf6N2E2_2938 -2.8 -4.5 Outer membrane lipoprotein compare
Pf6N2E2_3338 -2.8 -1.9 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_3454 -2.8 -2.3 hypothetical protein compare
Pf6N2E2_292 -2.8 -8.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf6N2E2_288 -2.8 -1.7 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_2126 -2.8 -6.3 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_5155 -2.7 -2.9 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_6057 -2.7 -2.2 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_4556 -2.7 -3.0 FIG00953078: hypothetical protein compare
Pf6N2E2_2344 -2.7 -8.5 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_304 -2.7 -3.1 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Pf6N2E2_5986 -2.6 -1.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2121 -2.6 -1.7 hypothetical protein compare
Pf6N2E2_827 -2.6 -2.3 probable dioxygenase compare
Pf6N2E2_2722 -2.6 -4.0 FIG00954807: hypothetical protein compare
Pf6N2E2_2753 -2.6 -2.5 HtrA protease/chaperone protein compare
Pf6N2E2_5001 -2.6 -1.4 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_2513 -2.6 -3.9 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_395 -2.5 -2.6 Glutathione S-transferase (EC 2.5.1.18) compare
Pf6N2E2_2969 -2.5 -7.4 Peptide chain release factor RF-3 compare
Pf6N2E2_5739 -2.5 -0.9 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_5237 -2.5 -1.7 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_3257 -2.5 -1.7 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_6140 -2.4 -0.8 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_447 -2.4 -4.1 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_3942 -2.4 -6.1 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
Pf6N2E2_2217 -2.4 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_1081 -2.4 -1.2 probable membrane protein YPO3302 compare
Pf6N2E2_5571 -2.4 -1.3 hypothetical protein compare
Pf6N2E2_3260 -2.4 -3.6 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_2017 -2.4 -1.4 DNA-binding protein compare
Pf6N2E2_248 -2.4 -7.1 hypothetical protein compare
Pf6N2E2_3737 -2.4 -1.8 General secretion pathway protein M compare
Pf6N2E2_1434 -2.4 -1.6 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_3271 -2.4 -1.6 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_3659 -2.3 -4.2 Protein fixF compare
Pf6N2E2_4044 -2.3 -3.2 Holliday junction resolvasome, helicase subunit compare
Pf6N2E2_5766 -2.3 -0.8 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_144 -2.3 -10.5 Uncharacterized protein YtfM precursor compare
Pf6N2E2_2219 -2.3 -1.2 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_4797 -2.3 -1.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_3161 -2.3 -2.4 hypothetical protein compare
Pf6N2E2_5242 -2.3 -2.2 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4459 -2.3 -1.3 Transcriptional regulator, GntR family compare
Pf6N2E2_2200 -2.3 -1.1 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_2021 -2.3 -6.7 Excinuclease ABC subunit C compare
Pf6N2E2_4498 -2.3 -8.9 Outer membrane porin, OprD family compare
Pf6N2E2_5190 -2.3 -8.5 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_2010 -2.3 -1.4 hypothetical protein compare
Pf6N2E2_2045 -2.3 -1.9 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) compare
Pf6N2E2_2755 -2.3 -1.1 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_1735 -2.3 -1.9 PhnB protein compare
Pf6N2E2_2433 -2.3 -3.3 Probable transmembrane protein compare
Pf6N2E2_1056 -2.2 -0.7 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_737 -2.2 -1.2 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_145 -2.2 -4.8 putative exported protein compare
Pf6N2E2_291 -2.2 -4.0 ATP-dependent Clp protease adaptor protein ClpS compare
Pf6N2E2_5340 -2.2 -4.1 Stringent starvation protein A compare
Pf6N2E2_6038 -2.2 -2.5 hypothetical protein compare
Pf6N2E2_613 -2.2 -0.9 lipoprotein, putative compare
Pf6N2E2_3763 -2.2 -1.2 hypothetical protein compare
Pf6N2E2_5841 -2.2 -0.9 GlcG protein compare
Pf6N2E2_712 -2.1 -2.2 hypothetical protein compare
Pf6N2E2_4416 -2.1 -2.6 Tyrosine recombinase XerC compare
Pf6N2E2_3941 -2.1 -2.7 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_3248 -2.1 -3.4 Probable transmembrane protein compare
Pf6N2E2_89 -2.1 -1.5 hypothetical protein compare
Pf6N2E2_4153 -2.1 -0.9 Sensory box histidine kinase compare
Pf6N2E2_4453 -2.1 -10.0 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_5186 -2.1 -7.1 FIG00954491: hypothetical protein compare
Pf6N2E2_420 -2.1 -0.9 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_5160 -2.1 -1.1 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_1972 -2.1 -1.4 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_3607 -2.0 -5.5 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2440 -2.0 -0.8 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_3351 -2.0 -3.9 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_1957 -2.0 -2.6 putative inner membrane protein compare
Pf6N2E2_622 -2.0 -3.0 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_1718 -2.0 -1.8 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare


Specific Phenotypes

For 15 genes in this experiment

For stress Bile salts in Pseudomonas fluorescens FW300-N2E2

For stress Bile salts across organisms