Experiment set6IT091 for Pseudomonas fluorescens FW300-N2C3

Compare to:

4C survival; 192 hrs

200 most important genes:

  gene name fitness t score description  
AO356_15325 -4.6 -4.0 hypothetical protein compare
AO356_08905 -4.5 -3.1 glycosyl transferase compare
AO356_12520 -4.4 -3.0 orotate phosphoribosyltransferase compare
AO356_09540 -4.2 -2.9 twin-arginine protein translocation system subunit TatC compare
AO356_03500 -4.1 -4.9 3-oxoacyl-ACP reductase compare
AO356_24845 -4.1 -3.9 ATPase compare
AO356_16955 -4.0 -6.2 disulfide bond formation protein B compare
AO356_02465 -4.0 -2.7 carbonate dehydratase compare
AO356_20475 -3.9 -3.3 hypothetical protein compare
AO356_03365 -3.9 -4.6 UDP-N-acetylglucosamine 2-epimerase compare
AO356_21515 -3.8 -2.6 antitoxin compare
AO356_11450 -3.7 -2.6 cytochrome C compare
AO356_11420 -3.7 -10.3 histidine kinase compare
AO356_02875 -3.6 -7.0 peroxiredoxin compare
AO356_11610 -3.6 -2.5 glycerol acyltransferase compare
AO356_22795 -3.6 -3.5 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_06575 -3.6 -2.4 outer membrane protein assembly factor BamB compare
AO356_11585 -3.5 -5.8 lipid A biosynthesis lauroyl acyltransferase compare
AO356_03420 -3.4 -8.7 UDP-N-acetyl-D-glucosamine dehydrogenase compare
AO356_17070 -3.4 -2.3 cytochrome B compare
AO356_03620 -3.4 -5.1 cytochrome C compare
AO356_03375 -3.4 -3.2 ExsB family protein compare
AO356_08890 -3.3 -9.5 glycosyltransferase compare
AO356_08895 -3.3 -2.3 GlcNAc-PI de-N-acetylase compare
AO356_18805 -3.3 -2.2 magnesium transporter compare
AO356_01270 -3.3 -7.9 (Fe-S)-binding protein compare
AO356_01740 -3.2 -3.1 DNA-binding protein compare
AO356_02460 -3.2 -2.9 hypothetical protein compare
AO356_11315 -3.1 -2.2 shikimate dehydrogenase compare
AO356_03495 -3.1 -4.7 phosphoglycolate phosphatase compare
AO356_09755 -3.1 -5.4 preprotein translocase subunit SecB compare
AO356_08640 -3.1 -3.0 membrane protease HflC compare
AO356_18025 -3.0 -3.6 ATP-dependent DNA helicase RuvB compare
AO356_19420 -3.0 -2.1 septum formation inhibitor compare
AO356_12515 -3.0 -3.6 exodeoxyribonuclease III compare
AO356_08880 -3.0 -6.9 glycosyl transferase compare
AO356_03360 -3.0 -3.5 hypothetical protein compare
AO356_03405 -3.0 -4.0 serine acetyltransferase compare
AO356_02420 -2.9 -4.7 cytochrome C oxidase Cbb3 compare
AO356_18020 -2.9 -4.3 ATP-dependent DNA helicase RuvA compare
AO356_15165 -2.8 -2.9 protein cII compare
AO356_28205 -2.8 -7.7 hemolysin secretion protein D compare
AO356_15645 -2.8 -7.1 ubiquinol oxidase subunit II compare
AO356_27180 -2.8 -4.9 hypothetical protein compare
AO356_21465 -2.7 -5.2 amidophosphoribosyltransferase compare
AO356_17890 -2.7 -2.8 H-NS histone compare
AO356_14335 -2.7 -4.1 rRNA methyltransferase compare
AO356_20175 -2.7 -2.6 3-oxoacyl-ACP synthase compare
AO356_01275 -2.7 -6.0 GntR family transcriptional regulator compare
AO356_04560 -2.7 -3.1 serine peptidase compare
AO356_03345 -2.6 -9.4 hypothetical protein compare
AO356_03350 -2.6 -7.3 glycosyl transferase compare
AO356_03415 -2.6 -7.6 oxidoreductase compare
AO356_08645 -2.6 -3.5 hypothetical protein compare
AO356_08875 -2.6 -3.9 toluene tolerance protein compare
AO356_02190 -2.5 -6.5 hypothetical protein compare
AO356_07480 -2.5 -3.4 carbamoyl phosphate synthase large subunit compare
AO356_02405 -2.5 -11.0 cytochrome C oxidase Cbb3 compare
AO356_17075 -2.5 -2.4 cytochrome C compare
AO356_04555 -2.5 -7.8 peptidase M48 compare
AO356_16600 -2.5 -2.9 malate:quinone oxidoreductase compare
AO356_22095 -2.5 -5.7 cupin compare
AO356_02410 -2.5 -5.0 cytochrome C oxidase Cbb3 compare
AO356_01745 -2.5 -5.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_11025 -2.5 -5.4 transcriptional regulator PhoU compare
AO356_14295 -2.4 -2.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_19090 -2.4 -3.3 phosphoribosylaminoimidazole synthetase compare
AO356_08870 -2.4 -7.5 polymerase compare
AO356_17065 -2.4 -2.3 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_07915 -2.4 -3.2 exodeoxyribonuclease V subunit beta compare
AO356_16075 -2.4 -4.5 Fis family transcriptional regulator compare
AO356_01750 -2.3 -3.5 ATP-dependent Clp protease proteolytic subunit compare
AO356_15420 -2.3 -3.4 hypothetical protein compare
AO356_16070 -2.3 -6.1 poly(A) polymerase compare
AO356_14355 -2.3 -8.8 aminoglycoside phosphotransferase compare
AO356_14920 -2.3 -2.3 hypothetical protein compare
AO356_14790 -2.3 -8.2 MFS transporter compare
AO356_02315 -2.2 -3.9 DNA topoisomerase I compare
AO356_06990 -2.2 -4.9 toluene tolerance protein compare
AO356_09765 -2.2 -2.0 sulfurtransferase compare
AO356_08320 -2.2 -3.9 copper resistance protein CopZ compare
AO356_02285 -2.2 -4.6 beta-hexosaminidase compare
AO356_06690 -2.2 -3.6 queuine tRNA-ribosyltransferase compare
AO356_06415 -2.2 -4.3 cytochrome C assembly protein compare
AO356_28200 -2.1 -8.3 macrolide transporter compare
AO356_13345 -2.1 -2.3 cell division ATP-binding protein FtsE compare
AO356_14505 -2.1 -2.7 peptidase M23 compare
AO356_03180 -2.1 -4.4 CysB family transcriptional regulator compare
AO356_23500 -2.0 -6.0 TetR family transcriptional regulator compare
AO356_16050 -2.0 -3.1 glucose-6-phosphate isomerase compare
AO356_04550 -2.0 -3.3 response regulator SirA compare
AO356_14360 -2.0 -6.1 mannose-1-phosphate guanylyltransferase compare
AO356_08610 -2.0 -7.2 exoribonuclease R compare
AO356_05555 -2.0 -11.2 AmpG family muropeptide MFS transporter compare
AO356_07910 -2.0 -2.3 exodeoxyribonuclease V subunit alpha compare
AO356_10185 -2.0 -7.7 glutamate--cysteine ligase compare
AO356_03400 -2.0 -4.8 aminotransferase DegT compare
AO356_12725 -2.0 -4.1 recombinase XerC compare
AO356_10170 -1.9 -2.6 chemotaxis protein CheY compare
AO356_24245 -1.9 -2.7 siderophore-iron reductase FhuF compare
AO356_07540 -1.9 -2.2 SsrA-binding protein compare
AO356_07105 -1.9 -7.7 hypothetical protein compare
AO356_20875 -1.9 -6.6 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO356_14500 -1.9 -6.9 anhydro-N-acetylmuramic acid kinase compare
AO356_12900 -1.9 -4.2 exopolyphosphatase compare
AO356_03780 -1.8 -1.8 flagellar motor switch protein compare
AO356_03355 -1.8 -3.9 hypothetical protein compare
AO356_06685 -1.8 -1.8 preprotein translocase subunit YajC compare
AO356_02290 -1.8 -2.9 TetR family transcriptional regulator compare
AO356_08930 -1.8 -2.5 heptose kinase compare
AO356_06995 -1.8 -4.8 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_09800 -1.7 -4.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_08985 -1.7 -1.4 hypothetical protein compare
AO356_20880 -1.7 -2.5 3-methylitaconate isomerase compare
AO356_11270 -1.7 -6.4 potassium transporter peripheral membrane component compare
AO356_12500 -1.7 -7.5 ribonuclease PH compare
AO356_06580 -1.7 -2.8 GTP-binding protein compare
AO356_08660 -1.7 -7.0 tRNA dimethylallyltransferase compare
AO356_08910 -1.7 -3.2 carbamoyltransferase compare
AO356_17830 -1.6 -4.3 pyruvate kinase compare
AO356_05540 -1.6 -2.2 cold-shock protein compare
AO356_09810 -1.6 -4.3 imidazole glycerol phosphate synthase subunit HisH compare
AO356_11990 -1.6 -8.5 DNA helicase II compare
AO356_03740 -1.6 -4.4 flagellar biosynthesis protein FlhF compare
AO356_22825 -1.6 -2.6 transcriptional regulator compare
AO356_16185 -1.6 -3.8 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
AO356_17950 -1.6 -6.5 histidine kinase compare
AO356_21275 -1.6 -1.8 peptidase compare
AO356_06105 -1.6 -1.6 cold-shock protein compare
AO356_03685 -1.5 -6.3 chemotaxis protein CheW compare
AO356_13475 -1.5 -4.2 glutathione synthetase compare
AO356_01255 -1.5 -6.6 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
AO356_01505 -1.5 -3.8 isochorismatase compare
AO356_19425 -1.5 -2.0 lipid A biosynthesis lauroyl acyltransferase compare
AO356_07020 -1.5 -1.8 LPS export ABC transporter periplasmic protein LptC compare
AO356_07210 -1.5 -2.6 histidine kinase compare
AO356_08235 -1.5 -6.0 histidine kinase compare
AO356_03775 -1.5 -1.4 flagellar assembly protein FliO compare
AO356_04885 -1.5 -4.9 multidrug transporter compare
AO356_19050 -1.5 -2.0 cysteine synthase compare
AO356_09835 -1.5 -4.0 iron transporter compare
AO356_07495 -1.5 -2.8 molecular chaperone DnaJ compare
AO356_04525 -1.4 -4.1 hypothetical protein compare
AO356_15640 -1.4 -5.6 cytochrome D ubiquinol oxidase subunit I compare
AO356_09880 -1.4 -2.4 antitoxin compare
AO356_13350 -1.4 -9.9 cell division protein FtsX compare
AO356_13195 -1.4 -7.1 thiol-disulfide isomerase compare
AO356_02455 -1.4 -7.0 (Fe-S)-binding protein compare
AO356_04570 -1.4 -3.0 RNA polymerase subunit sigma compare
AO356_24335 -1.4 -1.7 type VI secretion protein compare
AO356_02360 -1.3 -2.7 multifunctional fatty acid oxidation complex subunit alpha compare
AO356_26630 -1.3 -2.5 XshC-Cox1 family protein compare
AO356_20830 -1.3 -2.8 phosphoadenosine phosphosulfate reductase compare
AO356_27585 -1.3 -3.8 AcrR family transcriptional regulator compare
AO356_04965 -1.3 -1.1 ATP-dependent helicase compare
AO356_15920 -1.3 -2.8 DNA transporter compare
AO356_07920 -1.3 -4.0 exodeoxyribonuclease V subunit gamma compare
AO356_30025 -1.3 -1.6 ferredoxin compare
AO356_03380 -1.3 -3.5 glycosyl amidation-associated protein WbuZ compare
AO356_10165 -1.3 -5.0 ATPase compare
AO356_19080 -1.3 -6.8 dehydrogenase compare
AO356_09940 -1.3 -1.9 hypothetical protein compare
AO356_08735 -1.3 -6.1 phosphoserine phosphatase compare
AO356_08290 -1.3 -2.8 precorrin-6Y C5,15-methyltransferase compare
AO356_03855 -1.2 -7.5 AAA family ATPase compare
AO356_21685 -1.2 -1.8 hypothetical protein compare
AO356_18930 -1.2 -8.2 flagellar biosynthesis protein FlgE compare
AO356_13320 -1.2 -2.6 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO356_28440 -1.2 -1.5 galactose 1-dehydrogenase compare
AO356_21460 -1.2 -2.2 colicin V production CvpA compare
AO356_12715 -1.2 -3.3 hypothetical protein compare
AO356_19390 -1.2 -1.5 hypothetical protein compare
AO356_03995 -1.2 -5.6 potassium transporter TrkH compare
AO356_26645 -1.2 -2.9 crotonase compare
AO356_10005 -1.2 -5.6 branched-chain amino acid permease (azaleucine resistance) compare
AO356_02440 -1.2 -4.8 cytochrome C oxidase Cbb3 compare
AO356_02430 -1.2 -4.0 cytochrome C oxidase Cbb3 compare
AO356_25455 -1.2 -2.3 transcriptional regulator compare
AO356_00995 -1.2 -3.9 carbon storage regulator CsrA compare
AO356_03715 -1.2 -4.0 chemotaxis protein CheA compare
AO356_07390 -1.2 -1.5 polyribonucleotide nucleotidyltransferase compare
AO356_19335 -1.2 -7.1 peptidase S41 compare
AO356_19300 -1.2 -6.3 peptidylprolyl isomerase compare
AO356_08755 -1.1 -1.6 aspartyl protease compare
AO356_29695 -1.1 -2.3 polysaccharide deacetylase compare
AO356_04330 -1.1 -3.2 allophanate hydrolase compare
AO356_03840 -1.1 -4.0 flagellar hook-basal body protein FliE compare
AO356_07110 -1.1 -3.2 ribonuclease G compare
AO356_09565 -1.1 -4.7 glucan biosynthesis protein G compare
AO356_03010 -1.1 -1.6 glutaredoxin compare
AO356_09560 -1.1 -6.7 glucosyltransferase MdoH compare
AO356_02480 -1.1 -5.5 coproporphyrinogen III oxidase compare
AO356_03725 -1.1 -1.4 histidine kinase compare
AO356_19795 -1.1 -2.7 glycerol-3-phosphate dehydrogenase compare
AO356_12610 -1.1 -1.4 Fe-S oxidoreductase compare
AO356_18915 -1.1 -3.0 flagellar biosynthesis protein FlgB compare
AO356_16875 -1.1 -6.7 GntR family transcriptional regulator compare
AO356_02800 -1.1 -1.8 transporter compare
AO356_21775 -1.1 -2.8 4Fe-4S ferredoxin compare
AO356_19515 -1.1 -1.5 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment