Experiment set6IT091 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Lysine nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_24130 -4.9 -4.8 hypothetical protein compare
AO353_20540 -4.5 -8.1 aromatic amino acid aminotransferase compare
AO353_20625 -4.5 -3.1 3-isopropylmalate dehydratase compare
AO353_12090 -4.3 -3.0 imidazole glycerol phosphate synthase subunit HisF compare
AO353_07220 -4.3 -7.1 anthranilate synthase compare
AO353_05115 -4.0 -10.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO353_12070 -4.0 -7.1 imidazoleglycerol-phosphate dehydratase compare
AO353_20695 -4.0 -7.9 O-succinylhomoserine sulfhydrylase compare
AO353_12085 -3.9 -7.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO353_13070 -3.9 -6.5 phosphoserine phosphatase compare
AO353_07230 -3.9 -16.1 anthranilate synthase compare
AO353_13100 -3.8 -2.6 GTPase RsgA compare
AO353_22800 -3.8 -3.7 sulfite reductase compare
AO353_20635 -3.7 -13.0 3-isopropylmalate dehydrogenase compare
AO353_05625 -3.7 -2.5 transcription elongation factor GreA compare
AO353_22945 -3.6 -15.2 glycogen branching protein compare
AO353_00310 -3.6 -9.6 transaldolase compare
AO353_07210 -3.6 -6.4 indole-3-glycerol-phosphate synthase compare
AO353_20620 -3.5 -8.3 isopropylmalate isomerase compare
AO353_02075 -3.5 -11.0 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_02070 -3.4 -8.8 prephenate dehydratase compare
AO353_14505 -3.4 -12.6 ketol-acid reductoisomerase compare
AO353_10710 -3.4 -4.6 tryptophan synthase subunit beta compare
AO353_12515 -3.4 -21.0 glutamate synthase compare
AO353_12075 -3.3 -9.1 imidazole glycerol phosphate synthase subunit HisH compare
AO353_14500 -3.3 -6.7 acetolactate synthase 3 regulatory subunit compare
AO353_08185 -3.3 -9.7 methionine biosynthesis protein MetW compare
AO353_20665 -3.3 -9.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_07420 -3.3 -16.4 Lysine 2-monooxygenase (EC 1.13.12.2) (from data) conserved
AO353_12520 -3.3 -12.9 glutamate synthase compare
AO353_05110 -3.2 -12.0 histidinol dehydrogenase compare
AO353_08180 -3.2 -14.1 homoserine O-acetyltransferase compare
AO353_08685 -3.2 -9.5 N-acetylglutamate synthase compare
AO353_09240 -3.2 -3.1 acetylglutamate kinase compare
AO353_13165 -3.2 -5.9 ATP phosphoribosyltransferase regulatory subunit compare
AO353_07215 -3.2 -8.6 anthranilate phosphoribosyltransferase compare
AO353_04105 -3.1 -8.9 argininosuccinate synthase compare
AO353_07415 -3.0 -7.1 AsnC family transcriptional regulator conserved
AO353_26945 -3.0 -3.7 transcriptional regulator compare
AO353_14495 -2.9 -11.8 acetolactate synthase 3 catalytic subunit compare
AO353_08345 -2.9 -9.8 dihydroxy-acid dehydratase compare
AO353_12145 -2.8 -5.4 nitrogen regulation protein NR(I) compare
AO353_08475 -2.8 -10.0 phosphoserine phosphatase compare
AO353_14115 -2.8 -7.6 gamma-glutamyl kinase compare
AO353_01375 -2.8 -7.4 phosphate acyltransferase compare
AO353_08015 -2.7 -7.8 5,10-methylenetetrahydrofolate reductase compare
AO353_09000 -2.7 -6.3 argininosuccinate lyase compare
AO353_15925 -2.7 -10.6 2-isopropylmalate synthase compare
AO353_01080 -2.6 -11.9 hypothetical protein compare
AO353_04155 -2.6 -12.3 ornithine carbamoyltransferase compare
AO353_00825 -2.5 -5.3 porin compare
AO353_08510 -2.5 -5.5 3-phosphoglycerate dehydrogenase compare
AO353_03360 -2.4 -8.9 glucose-6-phosphate dehydrogenase compare
AO353_06495 -2.3 -6.4 gamma-glutamyl phosphate reductase compare
AO353_03585 -2.3 -4.1 ATP-dependent DNA helicase RuvA compare
AO353_07155 -2.3 -7.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_10670 -2.3 -7.3 shikimate dehydrogenase compare
AO353_03590 -2.2 -4.2 crossover junction endodeoxyribonuclease RuvC compare
AO353_16450 -2.2 -11.9 protein-PII uridylyltransferase compare
AO353_08165 -2.2 -3.6 pyrroline-5-carboxylate reductase compare
AO353_02250 -2.2 -4.0 chorismate synthase compare
AO353_06045 -2.2 -7.7 exodeoxyribonuclease V subunit beta compare
AO353_12365 -2.1 -3.6 phosphoribosyl-AMP cyclohydrolase compare
AO353_12500 -2.1 -2.0 shikimate kinase compare
AO353_14400 -2.1 -4.3 Fis family transcriptional regulator compare
AO353_10705 -2.0 -4.7 tryptophan synthase subunit alpha compare
AO353_07425 -2.0 -10.9 5-aminopentanamidase (EC 3.5.1.30) (from data) conserved
AO353_08580 -2.0 -10.5 spermidine/putrescine ABC transporter substrate-binding protein conserved
AO353_12360 -1.9 -6.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO353_20095 -1.9 -5.9 histidine kinase compare
AO353_08780 -1.9 -7.0 5-formyltetrahydrofolate cyclo-ligase compare
AO353_09915 -1.8 -7.2 long-chain acyl-CoA thioester hydrolase compare
AO353_04355 -1.8 -2.7 homoserine dehydrogenase compare
AO353_03420 -1.8 -5.1 phosphogluconate dehydratase compare
AO353_20175 -1.8 -3.3 ATP-dependent Clp protease proteolytic subunit compare
AO353_01550 -1.8 -5.5 hypothetical protein compare
AO353_12150 -1.7 -5.2 histidine kinase compare
AO353_18715 -1.7 -2.2 histidine kinase compare
AO353_19060 -1.7 -4.2 CysB family transcriptional regulator compare
AO353_27650 -1.7 -4.8 cell division protein FtsK compare
AO353_14420 -1.7 -3.8 molecular chaperone DnaK compare
AO353_10025 -1.7 -10.5 pyruvate carboxylase subunit B compare
AO353_08565 -1.6 -9.4 spermidine/putrescine ABC transporter permease conserved
AO353_14370 -1.6 -6.4 glucose-6-phosphate isomerase compare
AO353_03580 -1.6 -3.2 ATP-dependent DNA helicase RuvB compare
AO353_02640 -1.6 -1.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_06040 -1.6 -3.1 exodeoxyribonuclease V subunit alpha compare
AO353_15250 -1.6 -3.5 cytochrome B compare
AO353_09890 -1.6 -4.6 phosphate ABC transporter ATP-binding protein compare
AO353_09660 -1.6 -2.0 hypothetical protein compare
AO353_00620 -1.5 -2.5 cytochrome C oxidase Cbb3 compare
AO353_06050 -1.5 -6.4 exodeoxyribonuclease V subunit gamma compare
AO353_08570 -1.5 -8.3 transporter conserved
AO353_12115 -1.5 -2.6 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_07325 -1.5 -2.2 diadenosine tetraphosphatase compare
AO353_13140 -1.5 -5.4 tRNA dimethylallyltransferase compare
AO353_11510 -1.5 -9.3 5-aminovalerate transaminase (EC 2.6.1.48) (from data) conserved
AO353_10030 -1.5 -8.1 pyruvate carboxylase subunit A compare
AO353_08560 -1.4 -6.4 spermidine/putrescine ABC transporter permease compare
AO353_24120 -1.4 -3.0 hypothetical protein compare
AO353_26885 -1.4 -5.7 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
AO353_04365 -1.4 -4.8 recombinase XerD compare
AO353_10945 -1.4 -2.4 cytochrome C compare
AO353_14740 -1.4 -3.3 GTP-binding protein compare
AO353_05690 -1.3 -3.1 SsrA-binding protein compare
AO353_10430 -1.3 -2.9 chromosome partitioning protein ParB compare
AO353_09720 -1.3 -1.5 hypothetical protein compare
AO353_12105 -1.3 -5.3 peptidase S41 compare
AO353_02720 -1.3 -4.1 cysteine synthase compare
AO353_02945 -1.3 -5.8 magnesium transporter compare
AO353_17005 -1.3 -3.2 hypothetical protein compare
AO353_16960 -1.3 -8.1 amino acid ABC transporter permease conserved
AO353_10035 -1.3 -6.2 LysR family transcriptional regulator compare
AO353_03250 -1.3 -2.3 gluconokinase compare
AO353_06455 -1.3 -2.6 D-alanyl-D-alanine carboxypeptidase compare
AO353_11850 -1.3 -3.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_02005 -1.3 -1.5 hypothetical protein compare
AO353_09050 -1.2 -3.4 recombinase XerC compare
AO353_16970 -1.2 -5.1 ABC transporter substrate-binding protein conserved
AO353_08485 -1.2 -8.6 threonine dehydratase compare
AO353_10455 -1.2 -1.8 tRNA modification GTPase MnmE compare
AO353_02685 -1.2 -2.9 phosphoribosylglycinamide formyltransferase compare
AO353_07525 -1.2 -8.2 biotin synthase compare
AO353_10725 -1.2 -1.4 dodecin flavoprotein compare
AO353_18135 -1.2 -2.3 hypothetical protein compare
AO353_05800 -1.2 -4.3 hypothetical protein compare
AO353_10445 -1.2 -1.6 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_00750 -1.2 -2.6 GntR family transcriptional regulator compare
AO353_19360 -1.1 -2.4 peroxiredoxin compare
AO353_20370 -1.1 -2.9 MerR family transcriptional regulator compare
AO353_16965 -1.1 -5.9 amino acid ABC transporter permease conserved
AO353_20200 -1.1 -3.4 peptidylprolyl isomerase compare
AO353_26285 -1.1 -2.2 hypothetical protein compare
AO353_07105 -1.1 -1.4 biotin--protein ligase compare
AO353_16855 -1.1 -2.8 tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA compare
AO353_18560 -1.1 -2.1 class I peptide chain release factor compare
AO353_05105 -1.0 -5.9 histidinol-phosphate aminotransferase compare
AO353_27155 -1.0 -2.1 hypothetical protein compare
AO353_02710 -1.0 -6.7 (p)ppGpp synthetase compare
AO353_15900 -1.0 -2.1 GTP-binding protein compare
AO353_03245 -1.0 -4.9 permease DsdX compare
AO353_20265 -1.0 -2.8 spore coat protein compare
AO353_27685 -1.0 -2.8 cold-shock protein compare
AO353_28910 -1.0 -2.8 hypothetical protein compare
AO353_05080 -1.0 -5.9 sulfate adenylyltransferase compare
AO353_01795 -1.0 -2.0 hypothetical protein compare
AO353_13405 -1.0 -2.6 urease accessory protein UreF compare
AO353_05325 -1.0 -4.1 GntR family transcriptional regulator compare
AO353_15730 -1.0 -2.5 hypothetical protein compare
AO353_14775 -1.0 -4.1 hypothetical protein compare
AO353_01985 -1.0 -5.5 hypothetical protein compare
AO353_16805 -0.9 -4.0 recombinase RecA compare
AO353_20585 -0.9 -2.2 TetR family transcriptional regulator compare
AO353_13715 -0.9 -2.5 translation initiation factor Sui1 compare
AO353_23405 -0.9 -2.0 hypothetical protein compare
AO353_20860 -0.9 -2.2 hypothetical protein compare
AO353_12390 -0.9 -1.6 poly(3-hydroxyalkanoate) granule-associated protein PhaI compare
AO353_14990 -0.9 -1.4 hypothetical protein compare
AO353_27190 -0.9 -3.1 hypothetical protein compare
AO353_08885 -0.9 -6.9 polyphosphate kinase compare
AO353_11340 -0.9 -1.5 MarR family transcriptional regulator compare
AO353_02015 -0.9 -4.2 acetyltransferase compare
AO353_06710 -0.9 -1.2 riboflavin synthase subunit alpha compare
AO353_18985 -0.9 -2.7 hypothetical protein compare
AO353_01410 -0.9 -2.1 ribonuclease E compare
AO353_01085 -0.9 -5.5 methionyl-tRNA formyltransferase compare
AO353_03915 -0.9 -3.7 LysR family transcriptional regulator compare
AO353_13420 -0.9 -1.6 hypothetical protein compare
AO353_03715 -0.9 -1.7 H-NS histone compare
AO353_01135 -0.9 -1.1 enoyl-CoA hydratase compare
AO353_21625 -0.8 -1.4 Fe/S biogenesis protein NfuA compare
AO353_11945 -0.8 -0.7 4-oxalocrotonate tautomerase compare
AO353_19515 -0.8 -2.9 haloacid dehalogenase compare
AO353_03775 -0.8 -4.3 pyruvate kinase compare
AO353_21655 -0.8 -2.0 cobalamin biosynthesis protein CobW compare
AO353_22645 -0.8 -1.2 hypothetical protein compare
AO353_14395 -0.8 -2.6 poly(A) polymerase compare
AO353_15875 -0.8 -2.9 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO353_20170 -0.8 -2.9 trigger factor compare
AO353_08045 -0.8 -5.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_04475 -0.8 -2.2 hypothetical protein compare
AO353_08265 -0.8 -3.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_02020 -0.8 -2.8 hypothetical protein compare
AO353_13245 -0.8 -3.8 hypothetical protein compare
AO353_14000 -0.8 -2.7 GTP-binding protein compare
AO353_16955 -0.8 -3.4 succinylglutamate desuccinylase compare
AO353_28055 -0.8 -2.2 hypothetical protein compare
AO353_16375 -0.8 -1.6 hypothetical protein compare
AO353_07555 -0.8 -2.1 glycine cleavage system protein R compare
AO353_08375 -0.8 -2.8 hypothetical protein compare
AO353_08110 -0.8 -3.7 glutathione synthetase compare
AO353_26830 -0.8 -2.8 histidine kinase compare
AO353_12935 -0.8 -2.2 glycosyltransferase compare
AO353_01220 -0.8 -1.2 hypothetical protein compare
AO353_27130 -0.8 -1.2 hypothetical protein compare
AO353_19240 -0.8 -3.0 pseudouridine synthase compare
AO353_17995 -0.8 -3.9 hypothetical protein compare
AO353_13605 -0.8 -4.5 oxidoreductase compare
AO353_09040 -0.8 -0.9 diaminopimelate epimerase compare
AO353_06725 -0.7 -1.2 hypothetical protein compare


Specific Phenotypes

For 17 genes in this experiment

For nitrogen source L-Lysine in Pseudomonas fluorescens FW300-N2E3

For nitrogen source L-Lysine across organisms