Experiment set6IT091 for Herbaspirillum seropedicae SmR1

Compare to:

Carbon source Deoxyribonucleic acid from herring sperm 5 mg/mL

200 most important genes:

  gene name fitness t score description  
HSERO_RS20240 -3.6 -2.0 cytochrome B compare
HSERO_RS17980 -2.9 -3.3 GTP-binding protein compare
HSERO_RS16885 -2.8 -0.9 magnesium-transporting ATPase compare
HSERO_RS19630 -2.6 -0.8 AMP nucleosidase compare
HSERO_RS20345 -2.4 -5.8 histidinol dehydrogenase compare
HSERO_RS02215 -2.4 -0.7 D-arabinitol 4-dehydrogenase compare
HSERO_RS01815 -2.2 -7.3 gamma-glutamyl kinase compare
HSERO_RS10460 -2.0 -1.2 homoserine dehydrogenase compare
HSERO_RS20330 -2.0 -6.6 imidazoleglycerol-phosphate dehydratase compare
HSERO_RS04335 -2.0 -2.5 sodium:proton antiporter compare
HSERO_RS21475 -1.8 -1.7 recombinase XerC compare
HSERO_RS08655 -1.7 -1.4 acetolactate synthase compare
HSERO_RS02650 -1.7 -5.3 dihydroxy-acid dehydratase compare
HSERO_RS16505 -1.6 -4.6 3-isopropylmalate dehydratase small subunit compare
HSERO_RS16275 -1.6 -1.2 5-hydroxyisourate hydrolase compare
HSERO_RS00175 -1.6 -2.7 RNA polymerase sigma factor compare
HSERO_RS13965 -1.6 -1.9 single-stranded DNA exonuclease compare
HSERO_RS10785 -1.6 -1.7 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
HSERO_RS03450 -1.5 -2.1 energy transducer protein TonB compare
HSERO_RS05620 -1.4 -1.3 dehydratase compare
HSERO_RS12775 -1.4 -3.3 ABC transporter substrate-binding protein compare
HSERO_RS16035 -1.4 -2.9 cytochrome C oxidase compare
HSERO_RS16075 -1.4 -1.4 coproporphyrinogen III oxidase compare
HSERO_RS18990 -1.3 -3.2 pyrroline-5-carboxylate reductase compare
HSERO_RS18010 -1.3 -0.8 pseudouridine synthase compare
HSERO_RS19595 -1.3 -7.3 glutamate synthase compare
HSERO_RS14185 -1.3 -1.2 FeS cluster assembly scaffold IscU compare
HSERO_RS05515 -1.3 -0.4 glucose-6-phosphate isomerase compare
HSERO_RS08640 -1.3 -1.2 hypothetical protein compare
HSERO_RS07385 -1.3 -1.3 hypothetical protein compare
HSERO_RS20350 -1.3 -5.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
HSERO_RS12470 -1.3 -2.1 chemotaxis protein CheY compare
HSERO_RS20625 -1.2 -1.1 phenylacetate-CoA oxygenase compare
HSERO_RS08650 -1.2 -5.0 acetolactate synthase compare
HSERO_RS15655 -1.2 -1.4 methylcitrate synthase compare
HSERO_RS04325 -1.2 -2.7 helicase I compare
HSERO_RS15630 -1.2 -0.5 exodeoxyribonuclease III compare
HSERO_RS09465 -1.2 -5.4 aldehyde dehydrogenase compare
HSERO_RS02155 -1.2 -2.2 chorismate mutase compare
HSERO_RS17185 -1.2 -5.9 2-isopropylmalate synthase compare
HSERO_RS21525 -1.2 -1.8 alpha/beta hydrolase compare
HSERO_RS15780 -1.2 -2.1 GntR family transcriptional regulator compare
HSERO_RS09235 -1.1 -1.3 MarR family transcriptional regulator compare
HSERO_RS02450 -1.1 -1.7 arsenate reductase compare
HSERO_RS21345 -1.1 -2.8 cell division inhibitor MinD compare
HSERO_RS09475 -1.1 -5.3 Fis family transcriptional regulator compare
HSERO_RS10815 -1.1 -3.3 chromosome segregation protein SMC compare
HSERO_RS04830 -1.1 -5.8 alcohol dehydrogenase compare
HSERO_RS20310 -1.1 -2.0 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data) compare
HSERO_RS03015 -1.1 -1.6 hypothetical protein compare
HSERO_RS17110 -1.1 -1.3 ribonuclease H compare
HSERO_RS10490 -1.1 -3.5 gluconate transporter compare
HSERO_RS11465 -1.1 -1.5 sodium:proton antiporter compare
HSERO_RS20320 -1.1 -2.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
HSERO_RS13525 -1.1 -2.4 transmembrane transcriptional regulator (anti-sigma factor) compare
HSERO_RS01315 -1.0 -1.7 transcriptional regulator compare
HSERO_RS20760 -1.0 -1.7 hypothetical protein compare
HSERO_RS07890 -1.0 -1.3 hypothetical protein compare
HSERO_RS18455 -1.0 -2.4 phosphoglycolate phosphatase compare
HSERO_RS05630 -1.0 -1.2 AsnC family transcriptional regulator compare
HSERO_RS04535 -1.0 -3.7 tail protein X compare
HSERO_RS22040 -1.0 -2.9 CDP-glucose 4,6-dehydratase compare
HSERO_RS04330 -1.0 -2.8 ATP-dependent exonuclease compare
HSERO_RS07025 -1.0 -1.8 ATP-dependent Clp protease ClpS compare
HSERO_RS09670 -1.0 -2.5 DNA repair protein RecO compare
HSERO_RS16515 -1.0 -4.9 isopropylmalate isomerase compare
HSERO_RS01835 -1.0 -1.2 hypothetical protein compare
HSERO_RS15835 -0.9 -0.9 aspartate aminotransferase compare
HSERO_RS09650 -0.9 -1.3 elongation factor 4 compare
HSERO_RS02330 -0.9 -3.5 aspartate carbamoyltransferase compare
HSERO_RS13415 -0.9 -2.4 VdlD compare
HSERO_RS23655 -0.9 -1.2 phosphonate ABC transporter permease compare
HSERO_RS12540 -0.9 -2.0 hemerythrin compare
HSERO_RS02145 -0.9 -1.1 ferritin compare
HSERO_RS04445 -0.9 -1.5 hypothetical protein compare
HSERO_RS00900 -0.9 -1.4 L-proline ABC transporter, ATPase component 2 (from data) compare
HSERO_RS21445 -0.9 -0.7 lipid A biosynthesis acyltransferase compare
HSERO_RS20250 -0.9 -0.5 large conductance mechanosensitive channel protein MscL compare
HSERO_RS12260 -0.9 -2.5 hypothetical protein compare
HSERO_RS21480 -0.9 -0.8 transcriptional regulator compare
HSERO_RS20820 -0.9 -0.6 ABC transporter ATP-binding protein compare
HSERO_RS24010 -0.9 -4.5 LysR family transcriptional regulator compare
HSERO_RS09570 -0.9 -2.0 Fe-S oxidoreductase compare
HSERO_RS20315 -0.9 -1.8 imidazole glycerol phosphate synthase compare
HSERO_RS05540 -0.9 -1.1 cytochrome C' compare
HSERO_RS19510 -0.9 -3.4 threonine dehydratase compare
HSERO_RS00455 -0.9 -5.6 homoserine O-acetyltransferase compare
HSERO_RS18080 -0.9 -2.0 hypothetical protein compare
HSERO_RS01935 -0.8 -2.8 3-dehydroquinate dehydratase compare
HSERO_RS09770 -0.8 -2.0 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HSERO_RS10410 -0.8 -2.2 alkyl hydroperoxide reductase compare
HSERO_RS08770 -0.8 -3.2 membrane protein compare
HSERO_RS01020 -0.8 -1.2 hypothetical protein compare
HSERO_RS20630 -0.8 -1.1 phenylacetic acid degradation protein compare
HSERO_RS04455 -0.8 -1.7 major tail tube protein compare
HSERO_RS02875 -0.8 -1.4 transcriptional regulator compare
HSERO_RS08150 -0.8 -2.0 phasin family protein compare
HSERO_RS14960 -0.8 -2.4 Fis family transcriptional regulator compare
HSERO_RS10405 -0.8 -1.1 phosphate starvation protein PhoH compare
HSERO_RS03270 -0.8 -2.1 protein RecA compare
HSERO_RS01785 -0.8 -1.5 hypothetical protein compare
HSERO_RS00145 -0.8 -3.3 hypothetical protein compare
HSERO_RS21955 -0.8 -2.9 hypothetical protein compare
HSERO_RS01825 -0.8 -1.7 RNA pyrophosphohydrolase compare
HSERO_RS14475 -0.8 -2.4 iron ABC transporter ATP-binding protein compare
HSERO_RS16860 -0.8 -1.4 hypothetical protein compare
HSERO_RS07150 -0.8 -2.8 apolipoprotein acyltransferase compare
HSERO_RS20920 -0.8 -3.6 3-dehydroquinate synthase compare
HSERO_RS01990 -0.8 -2.1 shikimate 5-dehydrogenase compare
HSERO_RS19575 -0.7 -1.0 50S ribosomal protein L25 compare
HSERO_RS01505 -0.7 -1.3 transketolase compare
HSERO_RS11955 -0.7 -2.0 stress protein compare
HSERO_RS19590 -0.7 -0.6 dihydropyrimidine dehydrogenase subunit A compare
HSERO_RS03260 -0.7 -1.3 histidine kinase compare
HSERO_RS10395 -0.7 -1.4 phosphate transport regulator compare
HSERO_RS20615 -0.7 -1.3 phenylacetate-CoA oxygenase subunit PaaB compare
HSERO_RS01325 -0.7 -1.6 cation/multidrug efflux protein compare
HSERO_RS22725 -0.7 -1.8 transcriptional regulator compare
HSERO_RS13960 -0.7 -1.2 hypothetical protein compare
HSERO_RS19240 -0.7 -2.7 arginine ABC transporter ATP-binding protein compare
HSERO_RS04170 -0.7 -1.0 hypothetical protein compare
HSERO_RS18365 -0.7 -2.0 hypothetical protein compare
HSERO_RS05890 -0.7 -1.0 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
HSERO_RS19805 -0.7 -3.9 glycosyl transferase compare
HSERO_RS11095 -0.7 -1.9 plasmid stabilization protein compare
HSERO_RS04265 -0.7 -0.8 tyrosine recombinase XerD compare
HSERO_RS06740 -0.7 -3.0 porin compare
HSERO_RS00435 -0.7 -2.0 glutathione synthetase compare
HSERO_RS14950 -0.7 -1.1 purine-binding chemotaxis protein compare
HSERO_RS02445 -0.7 -1.4 proteinase inhibitor compare
HSERO_RS17880 -0.7 -1.8 membrane protein compare
HSERO_RS02340 -0.7 -4.7 dihydroorotase compare
HSERO_RS10085 -0.7 -1.7 transcriptional regulator compare
HSERO_RS13370 -0.7 -1.4 hypothetical protein compare
HSERO_RS20325 -0.7 -1.7 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
HSERO_RS15435 -0.7 -2.1 enoyl-CoA hydratase compare
HSERO_RS13275 -0.7 -1.1 cobalamin biosynthesis protein CbiG compare
HSERO_RS19885 -0.7 -1.8 AsnC family transcriptional regulator compare
HSERO_RS08030 -0.7 -1.8 von Willebrand factor A compare
HSERO_RS21240 -0.7 -1.3 polar amino acid ABC transporter permease compare
HSERO_RS14320 -0.7 -1.1 FmdB family transcriptional regulator compare
HSERO_RS18430 -0.6 -2.1 chorismate mutase compare
HSERO_RS06145 -0.6 -0.6 NrdR family transcriptional regulator compare
HSERO_RS21490 -0.6 -1.7 hypothetical protein compare
HSERO_RS10570 -0.6 -1.9 molybdenum ABC transporter ATPase compare
HSERO_RS02765 -0.6 -0.9 general stress protein compare
HSERO_RS16500 -0.6 -2.4 3-isopropylmalate dehydrogenase compare
HSERO_RS17175 -0.6 -1.2 paraquat-inducible protein A compare
HSERO_RS02735 -0.6 -0.7 hypothetical protein compare
HSERO_RS03320 -0.6 -2.1 ketosteroid isomerase compare
HSERO_RS02065 -0.6 -1.5 hypothetical protein compare
HSERO_RS04070 -0.6 -1.5 hypothetical protein compare
HSERO_RS08420 -0.6 -1.0 hypothetical protein compare
HSERO_RS22075 -0.6 -1.5 phosphohexose mutase compare
HSERO_RS07300 -0.6 -1.2 glutamate--cysteine ligase compare
HSERO_RS13270 -0.6 -2.6 bifunctional precorrin-3 methyltransferase/precorrin-6x reductase oxidoreductase compare
HSERO_RS19335 -0.6 -1.3 ABC transporter permease compare
HSERO_RS19090 -0.6 -0.7 C4-dicarboxylate ABC transporter compare
HSERO_RS06745 -0.6 -0.7 hypothetical protein compare
HSERO_RS15245 -0.6 -1.6 XRE family transcriptional regulator compare
HSERO_RS15240 -0.6 -1.5 XRE family transcriptional regulator compare
HSERO_RS00275 -0.6 -2.3 methylated-DNA--protein-cysteine methyltransferase compare
HSERO_RS00270 -0.6 -1.7 hypothetical protein compare
HSERO_RS08245 -0.6 -2.0 CysB family transcriptional regulator compare
HSERO_RS10350 -0.6 -1.0 flagellin compare
HSERO_RS07615 -0.6 -2.1 hypothetical protein compare
HSERO_RS03085 -0.6 -1.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HSERO_RS02775 -0.6 -0.7 hypothetical protein compare
HSERO_RS02160 -0.6 -0.8 DNA-dependent helicase compare
HSERO_RS07935 -0.6 -2.3 serine acetyltransferase compare
HSERO_RS02105 -0.6 -1.0 hypothetical protein compare
HSERO_RS19505 -0.6 -2.2 membrane protein compare
HSERO_RS10055 -0.6 -2.8 glycerate kinase compare
HSERO_RS06165 -0.6 -1.8 ATP-dependent DNA helicase RecG compare
HSERO_RS07160 -0.6 -1.8 phospho-2-dehydro-3-deoxyheptonate aldolase compare
HSERO_RS16300 -0.6 -2.3 peptidase M20 compare
HSERO_RS21935 -0.6 -0.5 cytochrome C compare
HSERO_RS16015 -0.6 -2.0 fatty acid desaturase compare
HSERO_RS22620 -0.6 -1.5 membrane protein compare
HSERO_RS16480 -0.6 -1.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
HSERO_RS15065 -0.6 -1.0 laccase compare
HSERO_RS19135 -0.6 -0.7 exodeoxyribonuclease compare
HSERO_RS23020 -0.6 -2.0 amino acid ABC transporter compare
HSERO_RS22895 -0.6 -2.3 membrane protein compare
HSERO_RS19445 -0.6 -2.1 anthranilate phosphoribosyltransferase compare
HSERO_RS07075 -0.6 -1.8 cysteine hydrolase compare
HSERO_RS23185 -0.6 -0.5 succinyl-CoA:3-ketoacid-CoA transferase compare
HSERO_RS10605 -0.5 -1.1 membrane protein compare
HSERO_RS09730 -0.5 -0.9 glycoside hydrolase family 43 compare
HSERO_RS12740 -0.5 -1.8 histone acetyltransferase HPA2, GnaT family, acetyltransferase compare
HSERO_RS10650 -0.5 -1.7 hypothetical protein compare
HSERO_RS15550 -0.5 -1.2 sulfite reductase compare
HSERO_RS05120 -0.5 -2.1 deoxyribose-phosphate aldolase compare
HSERO_RS14260 -0.5 -1.1 ferredoxin compare
HSERO_RS13770 -0.5 -1.1 polysaccharide deacetylase compare
HSERO_RS17705 -0.5 -1.4 chemotaxis protein compare
HSERO_RS06605 -0.5 -2.6 thioredoxin reductase compare
HSERO_RS13480 -0.5 -1.4 C4-dicarboxylate ABC transporter compare
HSERO_RS06280 -0.5 -2.5 GDP-mannose-dependent alpha-mannosyltransferase compare
HSERO_RS02560 -0.5 -0.8 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Deoxyribonucleic acid from herring sperm in Herbaspirillum seropedicae SmR1

For carbon source Deoxyribonucleic acid from herring sperm across organisms