Experiment set6IT091 for Herbaspirillum seropedicae SmR1

Compare to:

Carbon source Deoxyribonucleic acid from herring sperm 5 mg/mL

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS20985 +1.8 1.6 serine acetyltransferase compare
HSERO_RS05325 +1.7 3.3 ribose ABC transporter permease compare
HSERO_RS00805 +1.5 2.4 preprotein translocase subunit SecB compare
HSERO_RS16305 +1.4 3.3 hypothetical protein compare
HSERO_RS06420 +1.3 2.3 hypothetical protein compare
HSERO_RS03995 +1.2 2.4 hypothetical protein compare
HSERO_RS09910 +1.1 1.7 integration host factor subunit alpha compare
HSERO_RS21735 +1.1 1.1 hypothetical protein compare
HSERO_RS13885 +1.1 4.9 histidine kinase compare
HSERO_RS03700 +1.1 2.1 type VI secretion protein compare
HSERO_RS18550 +1.1 1.5 excinuclease ATPase subunit compare
HSERO_RS22015 +1.1 1.5 DNA-binding protein compare
HSERO_RS03980 +1.0 3.5 type III secretion HrcS protein compare
HSERO_RS01455 +1.0 1.9 hypothetical protein compare
HSERO_RS02545 +1.0 1.7 membrane protein compare
HSERO_RS11590 +1.0 2.1 hypothetical protein compare
HSERO_RS15205 +1.0 1.2 LysR family transcriptional regulator compare
HSERO_RS13890 +1.0 4.9 LuxR family transcriptional regulator compare
HSERO_RS14985 +1.0 3.8 transcriptional regulator compare
HSERO_RS18470 +1.0 2.0 acyltransferase compare
HSERO_RS07470 +1.0 1.2 ketosteroid isomerase compare
HSERO_RS03925 +0.9 1.9 hypothetical protein compare
HSERO_RS10145 +0.9 6.6 flagellar biosynthesis protein FlhA compare
HSERO_RS14325 +0.9 2.1 hypothetical protein compare
HSERO_RS03880 +0.9 1.2 hypothetical protein compare
HSERO_RS01105 +0.9 2.2 hypothetical protein compare
HSERO_RS02790 +0.9 1.7 hypothetical protein compare
HSERO_RS07435 +0.9 1.7 formate dehydrogenase accessory protein FdhD compare
HSERO_RS14215 +0.9 2.6 nitrogen fixation protein NifW compare
HSERO_RS21090 +0.9 2.4 dTDP-4-dehydrorhamnose reductase compare
HSERO_RS10970 +0.9 2.0 NfeD family protein compare
HSERO_RS10160 +0.9 5.2 flagellar biosynthesis sigma factor compare
HSERO_RS01550 +0.9 3.4 hypothetical protein compare
HSERO_RS03190 +0.9 2.3 glutathione S-transferase compare
HSERO_RS02815 +0.9 1.8 HxlR family transcriptional regulator compare
HSERO_RS08075 +0.9 1.0 ferredoxin compare
HSERO_RS16640 +0.9 2.0 ABC transporter substrate-binding protein compare
HSERO_RS04165 +0.9 1.1 hypothetical protein compare
HSERO_RS03915 +0.8 1.4 hypothetical protein compare
HSERO_RS10215 +0.8 4.9 flagellar P-ring protein FlgI compare
HSERO_RS10190 +0.8 3.7 flagellar basal body rod modification protein FlgD compare
HSERO_RS11165 +0.8 1.6 arylesterase compare
HSERO_RS20265 +0.8 0.7 hypothetical protein compare
HSERO_RS17010 +0.8 3.1 ABC transporter for D-sorbitol/xylitol, permease component 2 (from data) compare
HSERO_RS02580 +0.8 2.2 hypothetical protein compare
HSERO_RS04450 +0.8 2.2 hypothetical protein compare
HSERO_RS21450 +0.8 2.0 lipid A biosynthesis acyltransferase compare
HSERO_RS12995 +0.8 1.3 DNAase compare
HSERO_RS10285 +0.8 4.0 flagellar hook-length control protein compare
HSERO_RS06330 +0.8 2.3 transcriptional regulator compare
HSERO_RS22175 +0.8 0.8 hypothetical protein compare
HSERO_RS00895 +0.8 1.3 L-proline ABC transporter, ATPase component 1 (from data) compare
HSERO_RS10205 +0.8 2.7 flagellar basal body rod protein FlgG compare
HSERO_RS10685 +0.8 2.5 serine endopeptidase compare
HSERO_RS21095 +0.8 4.3 UDP-glucose 4-epimerase compare
HSERO_RS22325 +0.8 1.4 hypothetical protein compare
HSERO_RS10290 +0.8 4.8 flagellar biosynthesis protein FliJ compare
HSERO_RS11845 +0.7 1.6 hypothetical protein compare
HSERO_RS23095 +0.7 1.4 histidine kinase compare
HSERO_RS23635 +0.7 2.4 urease accessory protein UreG compare
HSERO_RS16220 +0.7 3.5 hypothetical protein compare
HSERO_RS18675 +0.7 1.6 hypothetical protein compare
HSERO_RS13335 +0.7 1.1 hypothetical protein compare
HSERO_RS06880 +0.7 3.2 transcriptional regulator compare
HSERO_RS10140 +0.7 3.8 flagellar biosynthesis protein FlhB compare
HSERO_RS22315 +0.7 2.9 hypothetical protein compare
HSERO_RS13940 +0.7 3.1 acetylornithine deacetylase compare
HSERO_RS12140 +0.7 1.2 5-deoxyglucuronate isomerase compare
HSERO_RS10175 +0.7 4.0 flagellar basal body P-ring biosynthesis protein FlgA compare
HSERO_RS00965 +0.7 0.8 trehalose-phosphatase compare
HSERO_RS15570 +0.7 3.3 sulfate adenylyltransferase compare
HSERO_RS10250 +0.7 3.7 flagellar biosynthesis protein FliR compare
HSERO_RS09750 +0.7 2.7 8-amino-7-oxononanoate synthase compare
HSERO_RS22065 +0.7 1.5 EpiA compare
HSERO_RS02205 +0.7 1.2 phosphatase compare
HSERO_RS10255 +0.7 1.4 flagellar biosynthesis protein FliQ compare
HSERO_RS06170 +0.7 1.1 S-adenosylmethionine tRNA ribosyltransferase compare
HSERO_RS07260 +0.7 2.0 diguanylate cyclase compare
HSERO_RS21015 +0.7 1.7 imidazole glycerol phosphate synthase compare
HSERO_RS08530 +0.7 1.7 glycine/betaine ABC transporter permease compare
HSERO_RS04675 +0.7 2.7 hypothetical protein compare
HSERO_RS12475 +0.7 1.3 histidine kinase compare
HSERO_RS18525 +0.7 1.2 hypothetical protein compare
HSERO_RS08405 +0.7 0.3 membrane protein compare
HSERO_RS22615 +0.7 1.4 transcriptional regulator compare
HSERO_RS18740 +0.7 1.0 hypothetical protein compare
HSERO_RS07395 +0.7 1.2 aldose 1-epimerase compare
HSERO_RS22285 +0.7 1.1 GntR family transcriptional regulator compare
HSERO_RS02800 +0.7 0.7 hypothetical protein compare
HSERO_RS10200 +0.7 3.9 flagellar basal body rod protein FlgF compare
HSERO_RS08465 +0.6 1.7 hypothetical protein compare
HSERO_RS10185 +0.6 4.0 flagellar basal body rod protein FlgC compare
HSERO_RS00810 +0.6 1.1 glutaredoxin compare
HSERO_RS03575 +0.6 1.5 D,D-heptose 1,7-bisphosphate phosphatase compare
HSERO_RS05910 +0.6 0.9 phosphoribosylglycinamide formyltransferase compare
HSERO_RS20575 +0.6 3.6 metal-dependent hydrolase compare
HSERO_RS09205 +0.6 1.2 glutathione ABC transporter permease compare
HSERO_RS14540 +0.6 1.8 nitrite reductase compare
HSERO_RS18965 +0.6 0.9 thiopurine S-methyltransferase compare
HSERO_RS14765 +0.6 1.9 membrane protein compare
HSERO_RS03285 +0.6 0.8 succinyl-CoA synthetase subsunit alpha compare
HSERO_RS04475 +0.6 0.9 tail fiber assembly protein compare
HSERO_RS02005 +0.6 2.1 membrane protein compare
HSERO_RS18770 +0.6 1.7 transcriptional regulator compare
HSERO_RS08795 +0.6 1.3 transcriptional regulator compare
HSERO_RS21100 +0.6 4.9 UDP-N-acetylglucosamine 2-epimerase compare
HSERO_RS16890 +0.6 2.2 hypothetical protein compare
HSERO_RS04055 +0.6 2.3 secretion system protein E compare
HSERO_RS09780 +0.6 0.9 phosphoglycerate mutase compare
HSERO_RS10150 +0.6 3.4 flagellar biosynthesis regulator FlhF compare
HSERO_RS06620 +0.6 2.4 (2Fe-2S)-binding protein compare
HSERO_RS22825 +0.6 2.3 NADH:flavin oxidoreductase compare
HSERO_RS09220 +0.6 0.8 hypothetical protein compare
HSERO_RS18600 +0.6 0.7 transcriptional regulator compare
HSERO_RS04825 +0.6 2.1 XRE family transcriptional regulator compare
HSERO_RS10265 +0.6 3.5 flagellar biosynthesis protein FliO compare
HSERO_RS23430 +0.6 1.9 Zn-dependent hydrolase compare
HSERO_RS10195 +0.6 3.3 flagellar hook protein FlgE compare
HSERO_RS22710 +0.6 1.4 hypothetical protein compare
HSERO_RS23765 +0.6 1.0 hypothetical protein compare
HSERO_RS03540 +0.6 0.8 dimethyladenosine transferase compare
HSERO_RS00450 +0.6 1.7 phosphoenolpyruvate-protein phosphotransferase compare
HSERO_RS22410 +0.6 1.6 alpha/beta hydrolase compare
HSERO_RS09455 +0.6 1.3 NAD synthetase compare
HSERO_RS10340 +0.6 1.7 flagellar biosynthesis protein FliS compare
HSERO_RS05180 +0.6 1.6 sugar ABC transporter permease compare
HSERO_RS13685 +0.6 1.6 peptidase S1 compare
HSERO_RS03875 +0.6 0.7 hypothetical protein compare
HSERO_RS15685 +0.6 3.1 histidine kinase compare
HSERO_RS02180 +0.6 1.4 fructokinase compare
HSERO_RS15620 +0.6 2.0 glycosyl transferase family 1 compare
HSERO_RS12950 +0.6 2.6 calcium-binding protein compare
HSERO_RS14970 +0.6 2.0 flagellar motor protein MotB compare
HSERO_RS10305 +0.6 2.3 flagellar motor switch protein FliG compare
HSERO_RS10315 +0.6 2.6 flagellar hook-basal body protein FliE compare
HSERO_RS12960 +0.6 1.0 hypothetical protein compare
HSERO_RS08080 +0.6 2.4 poly[D(-)-3-hydroxyalkanoate] depolymerase compare
HSERO_RS22830 +0.6 2.0 glutathione S-transferase compare
HSERO_RS06370 +0.6 1.6 aromatic compound catabolic protein compare
HSERO_RS02930 +0.6 1.8 cupin compare
HSERO_RS10310 +0.6 3.1 flagellar M-ring protein FliF compare
HSERO_RS03985 +0.6 1.9 type III secretion protein compare
HSERO_RS15625 +0.6 1.7 glycosyltransferase family 1 compare
HSERO_RS23340 +0.6 1.9 lipoprotein compare
HSERO_RS16200 +0.5 0.8 hypothetical protein compare
HSERO_RS13800 +0.5 1.2 glycosyl transferase family 1 compare
HSERO_RS09010 +0.5 2.6 hypothetical protein compare
HSERO_RS20035 +0.5 1.2 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
HSERO_RS04000 +0.5 1.4 type III secretion protein compare
HSERO_RS08455 +0.5 1.9 chemotaxis protein CheW compare
HSERO_RS10210 +0.5 1.3 flagellar L-ring protein FlgH compare
HSERO_RS01090 +0.5 1.1 hypothetical protein compare
HSERO_RS23600 +0.5 1.0 urea ABC transporter ATP-binding protein compare
HSERO_RS06600 +0.5 1.7 hypothetical protein compare
HSERO_RS19010 +0.5 2.3 ketol-acid reductoisomerase compare
HSERO_RS07320 +0.5 1.4 hypothetical protein compare
HSERO_RS14425 +0.5 0.9 hypothetical protein compare
HSERO_RS06270 +0.5 1.5 hemolysin protein compare
HSERO_RS23265 +0.5 1.6 ABC transporter compare
HSERO_RS09000 +0.5 2.0 hypothetical protein compare
HSERO_RS12010 +0.5 1.6 hemerythrin compare
HSERO_RS07250 +0.5 0.9 DNA-binding protein compare
HSERO_RS12275 +0.5 2.0 ABC transporter compare
HSERO_RS17940 +0.5 1.4 hypothetical protein compare
HSERO_RS18630 +0.5 0.7 hemerythrin compare
HSERO_RS21760 +0.5 2.2 DSBA oxidoreductase compare
HSERO_RS15545 +0.5 2.0 membrane protein compare
HSERO_RS15480 +0.5 2.6 transcriptional regulator compare
HSERO_RS01945 +0.5 2.2 hypothetical protein compare
HSERO_RS05855 +0.5 2.8 flagellar motor protein MotA compare
HSERO_RS12220 +0.5 0.7 dehydrogenase compare
HSERO_RS12790 +0.5 1.4 plasmid partitioning protein compare
HSERO_RS03000 +0.5 1.5 ABC transporter permease compare
HSERO_RS23645 +0.5 2.9 glycerol-3-phosphate dehydrogenase compare
HSERO_RS05560 +0.5 2.5 ABC transporter substrate-binding protein compare
HSERO_RS09990 +0.5 0.7 glycosyl transferase compare
HSERO_RS06805 +0.5 0.9 transcriptional regulator compare
HSERO_RS07675 +0.5 1.7 multidrug DMT transporter compare
HSERO_RS05900 +0.5 1.4 ribonuclease compare
HSERO_RS03865 +0.5 1.5 hypothetical protein compare
HSERO_RS18025 +0.5 2.4 glutamate synthase compare
HSERO_RS10280 +0.5 0.9 flagellar basal body protein FliL compare
HSERO_RS17160 +0.5 1.1 hypothetical protein compare
HSERO_RS23455 +0.5 1.0 methylcrotonoyl-CoA carboxylase compare
HSERO_RS22085 +0.5 1.8 D,D-heptose 1,7-bisphosphate phosphatase compare
HSERO_RS20975 +0.5 2.5 UDP-galactose-4-epimerase compare
HSERO_RS01160 +0.5 1.4 LysR family transcriptional regulator compare
HSERO_RS04460 +0.5 3.3 tail sheath protein compare
HSERO_RS11800 +0.5 1.7 hypothetical protein compare
HSERO_RS03885 +0.5 2.2 hypothetical protein compare
HSERO_RS21110 +0.5 2.3 dTDP-glucose 4,6-dehydratase compare
HSERO_RS06005 +0.5 1.8 hypothetical protein compare
HSERO_RS01915 +0.5 2.7 membrane protein compare
HSERO_RS09640 +0.5 1.5 peptidase compare
HSERO_RS10095 +0.5 1.1 hypothetical protein compare
HSERO_RS13185 +0.5 1.8 urea ABC transporter permease compare
HSERO_RS04505 +0.5 1.7 hypothetical protein compare
HSERO_RS20025 +0.5 2.2 feruloyl-CoA synthase compare
HSERO_RS21730 +0.5 2.6 short-chain dehydrogenase compare
HSERO_RS12920 +0.5 0.6 trigger factor compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Deoxyribonucleic acid from herring sperm in Herbaspirillum seropedicae SmR1

For carbon source Deoxyribonucleic acid from herring sperm across organisms