Experiment set6IT091 for Ralstonia sp. UNC404CL21Col

Compare to:

Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

200 most important genes:

  gene name fitness t score description  
ABZR87_RS14115 -5.9 -3.7 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS09505 -5.9 -5.8 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS13250 -5.7 -2.3 phosphoserine phosphatase SerB compare
ABZR87_RS08040 -5.6 -10.0 lipopolysaccharide heptosyltransferase II compare
ABZR87_RS07735 -5.5 -3.3 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS21795 -5.4 -3.7 NUDIX domain-containing protein compare
ABZR87_RS08750 -5.3 -3.7 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS06400 -5.2 -7.4 response regulator transcription factor compare
ABZR87_RS02565 -4.8 -3.3 glutamate synthase subunit beta compare
ABZR87_RS03075 -4.8 -8.0 AGE family epimerase/isomerase compare
ABZR87_RS06385 -4.7 -10.8 CHASE3 domain-containing protein compare
ABZR87_RS08695 -4.7 -8.5 capsular polysaccharide biosynthesis protein CapF compare
ABZR87_RS01855 -4.7 -11.0 A24 family peptidase compare
ABZR87_RS02640 -4.5 -15.4 diaminopimelate decarboxylase compare
ABZR87_RS09465 -4.5 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS14665 -4.4 -0.9 histidine phosphatase family protein compare
ABZR87_RS09500 -4.1 -3.3 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS14535 -4.0 -4.4 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS19320 -4.0 -0.8 hypothetical protein compare
ABZR87_RS02595 -4.0 -9.2 shikimate kinase compare
ABZR87_RS08630 -3.9 -8.2 dihydroorotase compare
ABZR87_RS14890 -3.9 -0.8 preprotein translocase subunit SecG compare
ABZR87_RS01485 -3.9 -2.7 2-dehydro-3-deoxygalactonokinase compare
ABZR87_RS02570 -3.9 -18.4 glutamate synthase-related protein compare
ABZR87_RS00970 -3.8 -1.7 molecular chaperone DnaJ compare
ABZR87_RS05100 -3.8 -4.5 RNA polymerase-binding protein DksA compare
ABZR87_RS07380 -3.8 -8.2 FAD/FMN-binding oxidoreductase compare
ABZR87_RS20690 -3.8 -1.3 recombinase-like helix-turn-helix domain-containing protein compare
ABZR87_RS13790 -3.8 -5.2 chorismate synthase compare
ABZR87_RS01035 -3.7 -5.9 histidine utilization repressor compare
ABZR87_RS14500 -3.7 -9.0 tryptophan synthase subunit beta compare
ABZR87_RS02160 -3.7 -4.1 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS14540 -3.7 -6.5 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS14505 -3.6 -3.8 phosphoribosylanthranilate isomerase compare
ABZR87_RS02590 -3.6 -2.5 3-dehydroquinate synthase compare
ABZR87_RS22970 -3.6 -10.4 cystathionine gamma-synthase family protein compare
ABZR87_RS10195 -3.6 -3.0 signal peptidase I compare
ABZR87_RS01690 -3.6 -0.7 collagen-like triple helix repeat-containing protein compare
ABZR87_RS02535 -3.5 -2.4 phospholipid-binding protein MlaC compare
ABZR87_RS05200 -3.5 -14.9 homoserine O-acetyltransferase compare
ABZR87_RS02655 -3.5 -7.1 anti-sigma factor compare
ABZR87_RS02155 -3.5 -6.1 anthranilate phosphoribosyltransferase compare
ABZR87_RS03425 -3.5 -6.8 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR87_RS13050 -3.5 -0.7 GpE family phage tail protein compare
ABZR87_RS16660 -3.5 -3.5 helix-turn-helix domain-containing protein compare
ABZR87_RS16125 -3.4 -6.8 heme biosynthesis protein HemY compare
ABZR87_RS02140 -3.3 -15.1 anthranilate synthase component I compare
ABZR87_RS01700 -3.3 -0.9 DUF2147 domain-containing protein compare
ABZR87_RS20300 -3.3 -2.2 hypothetical protein compare
ABZR87_RS10170 -3.3 -4.8 RseA family anti-sigma factor compare
ABZR87_RS15485 -3.3 -4.5 glycosyltransferase family 2 protein compare
ABZR87_RS18080 -3.3 -1.8 hypothetical protein compare
ABZR87_RS03445 -3.3 -6.2 type II secretion system protein N compare
ABZR87_RS12970 -3.3 -2.1 putative holin compare
ABZR87_RS04865 -3.2 -2.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS14490 -3.2 -5.4 tryptophan synthase subunit alpha compare
ABZR87_RS06350 -3.2 -8.0 thiol:disulfide interchange protein DsbA/DsbL compare
ABZR87_RS15490 -3.2 -11.2 glycosyltransferase family 2 protein compare
ABZR87_RS20880 -3.2 -8.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS02550 -3.2 -4.9 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS11990 -3.2 -1.4 hypothetical protein compare
ABZR87_RS14530 -3.1 -7.2 3-isopropylmalate dehydrogenase compare
ABZR87_RS12800 -3.1 -2.1 trigger factor compare
ABZR87_RS06030 -3.1 -0.6 AraC family transcriptional regulator compare
ABZR87_RS02445 -3.1 -3.4 Sec-independent protein translocase protein TatB compare
ABZR87_RS04975 -3.0 -2.7 peptide deformylase compare
ABZR87_RS00340 -3.0 -1.7 50S ribosomal protein L33 compare
ABZR87_RS03440 -3.0 -4.9 type II secretion system protein GspM compare
ABZR87_RS14675 -3.0 -0.6 glyoxalase compare
ABZR87_RS13400 -3.0 -0.6 hypothetical protein compare
ABZR87_RS07355 -3.0 -6.5 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
ABZR87_RS02555 -3.0 -4.9 ABC transporter ATP-binding protein compare
ABZR87_RS04880 -2.9 -9.4 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS10870 -2.9 -6.5 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR87_RS06845 -2.9 -6.5 heme o synthase compare
ABZR87_RS02440 -2.9 -6.8 twin-arginine translocase subunit TatC compare
ABZR87_RS22520 -2.9 -1.7 ABATE domain-containing protein compare
ABZR87_RS07290 -2.9 -1.6 DUF6691 family protein compare
ABZR87_RS02145 -2.9 -1.1 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS16730 -2.9 -5.7 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS14965 -2.8 -1.7 DUF3619 family protein compare
ABZR87_RS02545 -2.8 -5.1 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS09450 -2.8 -6.2 prephenate dehydratase compare
ABZR87_RS08645 -2.8 -0.6 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS03410 -2.8 -5.4 type II secretion system major pseudopilin GspG compare
ABZR87_RS02380 -2.8 -10.5 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS16165 -2.8 -0.6 anti-sigma factor compare
ABZR87_RS01980 -2.8 -1.8 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABZR87_RS23360 -2.8 -1.3 chemotaxis response regulator protein-glutamate methylesterase compare
ABZR87_RS17650 -2.8 -5.2 TetR/AcrR family transcriptional regulator compare
ABZR87_RS11245 -2.7 -1.9 translational GTPase TypA compare
ABZR87_RS18165 -2.7 -0.9 hypothetical protein compare
ABZR87_RS10080 -2.7 -6.2 GTP 3',8-cyclase MoaA compare
ABZR87_RS06760 -2.7 -3.5 glutaredoxin 3 compare
ABZR87_RS03450 -2.7 -11.5 type II secretion system secretin GspD compare
ABZR87_RS17215 -2.7 -9.1 1,4-alpha-glucan branching protein GlgB compare
ABZR87_RS20665 -2.6 -2.7 IclR family transcriptional regulator compare
ABZR87_RS15715 -2.6 -8.2 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS08625 -2.6 -1.5 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS02540 -2.6 -3.1 VacJ family lipoprotein compare
ABZR87_RS02375 -2.6 -8.1 cytochrome c1 compare
ABZR87_RS05305 -2.6 -6.7 TetR family transcriptional regulator compare
ABZR87_RS11470 -2.6 -3.4 molybdenum cofactor biosynthesis protein MoaE compare
ABZR87_RS22370 -2.6 -0.7 four-helix bundle copper-binding protein compare
ABZR87_RS01645 -2.6 -4.3 type II 3-dehydroquinate dehydratase compare
ABZR87_RS01675 -2.5 -1.5 carbohydrate kinase family protein compare
ABZR87_RS15405 -2.5 -2.3 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS16735 -2.5 -10.6 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS01810 -2.5 -2.3 glutamate 5-kinase compare
ABZR87_RS20875 -2.5 -4.5 LysR family transcriptional regulator compare
ABZR87_RS05570 -2.5 -7.9 lysophospholipid acyltransferase family protein compare
ABZR87_RS03460 -2.5 -8.4 type II secretion system inner membrane protein GspF compare
ABZR87_RS03565 -2.5 -4.4 TetR/AcrR family transcriptional regulator compare
ABZR87_RS01745 -2.5 -3.6 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
ABZR87_RS06745 -2.5 -7.2 S41 family peptidase compare
ABZR87_RS11650 -2.5 -3.3 ribosomal protein S18-alanine N-acetyltransferase compare
ABZR87_RS08795 -2.5 -3.1 undecaprenyl-diphosphate phosphatase compare
ABZR87_RS03430 -2.4 -7.4 type II secretion system minor pseudopilin GspK compare
ABZR87_RS13290 -2.4 -4.3 3-ketoacyl-ACP reductase compare
ABZR87_RS15505 -2.4 -0.5 DNA polymerase III subunit alpha compare
ABZR87_RS14605 -2.4 -8.9 aconitate hydratase AcnA compare
ABZR87_RS00200 -2.4 -2.5 phosphoadenylyl-sulfate reductase compare
ABZR87_RS17440 -2.4 -0.7 (2Fe-2S)-binding protein compare
ABZR87_RS00875 -2.4 -2.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS15665 -2.4 -4.9 ZIP family metal transporter compare
ABZR87_RS09445 -2.4 -8.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS07760 -2.4 -1.9 HlyC/CorC family transporter compare
ABZR87_RS01165 -2.3 -1.1 VOC family protein compare
ABZR87_RS11440 -2.3 -5.3 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS03420 -2.3 -0.6 type II secretion system minor pseudopilin GspI compare
ABZR87_RS16975 -2.3 -1.5 hypothetical protein compare
ABZR87_RS16515 -2.3 -1.3 helix-turn-helix domain-containing protein compare
ABZR87_RS03435 -2.3 -3.5 type II secretion system protein GspL compare
ABZR87_RS10980 -2.3 -0.6 tRNA-Leu compare
ABZR87_RS01085 -2.3 -3.6 rhombosortase compare
ABZR87_RS05580 -2.2 -1.3 diaminopimelate epimerase compare
ABZR87_RS17845 -2.2 -1.9 Crp/Fnr family transcriptional regulator compare
ABZR87_RS19010 -2.2 -1.7 acyloxyacyl hydrolase compare
ABZR87_RS02850 -2.2 -1.3 elongation factor Tu compare
ABZR87_RS01225 -2.2 -1.8 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS15255 -2.2 -4.8 ribonuclease PH compare
ABZR87_RS10175 -2.2 -4.4 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS13285 -2.2 -6.2 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS16740 -2.2 -6.1 2-methylcitrate synthase compare
ABZR87_RS16540 -2.2 -1.6 MarR family transcriptional regulator compare
ABZR87_RS00435 -2.1 -1.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS14780 -2.1 -1.7 MaoC family dehydratase compare
ABZR87_RS18560 -2.1 -1.2 NmrA family NAD(P)-binding protein compare
ABZR87_RS03415 -2.1 -7.7 GspH/FimT family pseudopilin compare
ABZR87_RS12070 -2.1 -0.8 porin compare
ABZR87_RS06395 -2.1 -6.1 response regulator compare
ABZR87_RS14125 -2.1 -2.6 YhbY family RNA-binding protein compare
ABZR87_RS08710 -2.1 -9.5 sugar transferase compare
ABZR87_RS12785 -2.1 -1.5 endopeptidase La compare
ABZR87_RS16820 -2.1 -3.5 TetR/AcrR family transcriptional regulator compare
ABZR87_RS07360 -2.1 -7.8 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS11625 -2.1 -6.7 malate synthase A compare
ABZR87_RS03930 -2.1 -1.0 glycine cleavage system protein GcvH compare
ABZR87_RS21140 -2.0 -2.5 dimethylsulfone monooxygenase SfnG compare
ABZR87_RS20555 -2.0 -2.3 helix-turn-helix transcriptional regulator compare
ABZR87_RS07710 -2.0 -5.6 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
ABZR87_RS01110 -2.0 -5.4 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS08015 -2.0 -6.0 cyclic pyranopterin monophosphate synthase MoaC compare
ABZR87_RS06950 -2.0 -7.0 pitrilysin family protein compare
ABZR87_RS07665 -2.0 -7.5 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS07035 -2.0 -2.7 RNase adapter RapZ compare
ABZR87_RS01615 -2.0 -0.9 RNB domain-containing ribonuclease compare
ABZR87_RS12780 -2.0 -0.7 HU family DNA-binding protein compare
ABZR87_RS03455 -1.9 -7.4 type II secretion system ATPase GspE compare
ABZR87_RS09460 -1.9 -2.9 prephenate dehydrogenase compare
ABZR87_RS23380 -1.9 -0.7 chemotaxis protein CheW compare
ABZR87_RS16055 -1.9 -3.2 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS01685 -1.9 -3.1 histone H1-like DNA-binding protein compare
ABZR87_RS02320 -1.9 -1.2 cytochrome o ubiquinol oxidase subunit IV compare
ABZR87_RS09650 -1.9 -4.4 molybdopterin adenylyltransferase compare
ABZR87_RS15500 -1.9 -5.8 glycosyltransferase compare
ABZR87_RS14360 -1.9 -5.9 acetate--CoA ligase compare
ABZR87_RS20075 -1.9 -1.1 DUF2892 domain-containing protein compare
ABZR87_RS21735 -1.9 -0.7 DUF2917 domain-containing protein compare
ABZR87_RS03335 -1.9 -1.8 hypothetical protein compare
ABZR87_RS00865 -1.9 -0.6 VTT domain-containing protein compare
ABZR87_RS18630 -1.9 -1.4 class II fumarate hydratase compare
ABZR87_RS11460 -1.8 -1.8 gephyrin-like molybdotransferase Glp compare
ABZR87_RS17115 -1.8 -2.2 phytanoyl-CoA dioxygenase family protein compare
ABZR87_RS13175 -1.8 -0.7 tRNA-Leu compare
ABZR87_RS20805 -1.8 -4.8 DNA-binding transcriptional regulator KdgR compare
ABZR87_RS04995 -1.8 -1.0 DNA topoisomerase III compare
ABZR87_RS18335 -1.8 -1.5 GntR family transcriptional regulator compare
ABZR87_RS03330 -1.8 -3.2 MarR family transcriptional regulator compare
ABZR87_RS21815 -1.7 -0.6 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS04785 -1.7 -5.9 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS07645 -1.7 -1.6 Fis family transcriptional regulator compare
ABZR87_RS04940 -1.7 -1.7 PAS domain-containing sensor histidine kinase compare
ABZR87_RS17310 -1.7 -3.0 PadR family transcriptional regulator compare
ABZR87_RS10190 -1.7 -4.8 translation elongation factor 4 compare
ABZR87_RS22620 -1.7 -3.2 UdgX family uracil-DNA binding protein compare
ABZR87_RS22910 -1.7 -1.0 6-phosphogluconolactonase compare
ABZR87_RS19975 -1.7 -2.3 thymidine phosphorylase family protein compare
ABZR87_RS15685 -1.7 -3.8 TIGR00730 family Rossman fold protein compare
ABZR87_RS11435 -1.7 -1.6 Mth938-like domain-containing protein compare


Specific Phenotypes

For 3 genes in this experiment

For no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB in Ralstonia sp. UNC404CL21Col

For no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB across organisms