Experiment set6IT090 for Pseudomonas fluorescens FW300-N2E3

Compare to:

L-Histidine nitrogen source

200 most important genes:

  gene name fitness t score description  
AO353_20625 -4.5 -3.1 3-isopropylmalate dehydratase compare
AO353_07210 -4.4 -4.3 indole-3-glycerol-phosphate synthase compare
AO353_07220 -4.3 -7.2 anthranilate synthase compare
AO353_20540 -4.2 -8.5 aromatic amino acid aminotransferase compare
AO353_02070 -4.1 -8.2 prephenate dehydratase compare
AO353_08345 -4.0 -7.2 dihydroxy-acid dehydratase compare
AO353_07230 -4.0 -15.3 anthranilate synthase compare
AO353_13070 -3.9 -6.0 phosphoserine phosphatase compare
AO353_12285 -3.8 -11.6 N-formylglutamate deformylase (EC 3.5.1.68) (from data) conserved
AO353_20695 -3.8 -7.6 O-succinylhomoserine sulfhydrylase compare
AO353_08180 -3.7 -12.4 homoserine O-acetyltransferase compare
AO353_20620 -3.7 -8.3 isopropylmalate isomerase compare
AO353_22800 -3.7 -3.6 sulfite reductase compare
AO353_14505 -3.7 -11.8 ketol-acid reductoisomerase compare
AO353_20635 -3.7 -12.8 3-isopropylmalate dehydrogenase compare
AO353_12235 -3.6 -13.9 Formiminoglutamic iminohydrolase (EC 3.5.3.13) (from data) conserved
AO353_03360 -3.6 -8.6 glucose-6-phosphate dehydrogenase compare
AO353_20665 -3.6 -10.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO353_12280 -3.5 -12.5 Imidazolonepropionase (EC 3.5.2.7) (from data) conserved
AO353_08685 -3.5 -8.5 N-acetylglutamate synthase compare
AO353_08185 -3.5 -11.4 methionine biosynthesis protein MetW compare
AO353_02075 -3.5 -10.7 3-phosphoserine/phosphohydroxythreonine aminotransferase compare
AO353_00310 -3.5 -9.7 transaldolase compare
AO353_19060 -3.4 -5.6 CysB family transcriptional regulator compare
AO353_14495 -3.2 -10.5 acetolactate synthase 3 catalytic subunit compare
AO353_07215 -3.2 -8.4 anthranilate phosphoribosyltransferase compare
AO353_09000 -3.2 -5.7 argininosuccinate lyase compare
AO353_09285 -3.1 -11.6 reactive intermediate/imine deaminase compare
AO353_09240 -3.1 -3.0 acetylglutamate kinase compare
AO353_04105 -3.1 -8.7 argininosuccinate synthase compare
AO353_08510 -3.1 -5.1 3-phosphoglycerate dehydrogenase compare
AO353_10670 -3.0 -8.3 shikimate dehydrogenase compare
AO353_10710 -3.0 -5.7 tryptophan synthase subunit beta compare
AO353_08780 -3.0 -8.5 5-formyltetrahydrofolate cyclo-ligase compare
AO353_14500 -2.9 -7.3 acetolactate synthase 3 regulatory subunit compare
AO353_04155 -2.9 -12.6 ornithine carbamoyltransferase compare
AO353_15925 -2.9 -12.6 2-isopropylmalate synthase compare
AO353_12515 -2.9 -19.8 glutamate synthase compare
AO353_00825 -2.9 -4.7 porin compare
AO353_03590 -2.8 -3.8 crossover junction endodeoxyribonuclease RuvC compare
AO353_21630 -2.8 -3.2 precorrin-4 C11-methyltransferase compare
AO353_12500 -2.8 -1.9 shikimate kinase compare
AO353_07525 -2.8 -14.6 biotin synthase compare
AO353_02710 -2.8 -11.2 (p)ppGpp synthetase compare
AO353_19750 -2.8 -3.6 diaminopimelate epimerase compare
AO353_11770 -2.7 -1.9 molecular chaperone Hsp33 compare
AO353_13610 -2.7 -4.9 precorrin isomerase compare
AO353_12520 -2.7 -10.8 glutamate synthase compare
AO353_08015 -2.7 -7.4 5,10-methylenetetrahydrofolate reductase compare
AO353_02465 -2.7 -3.1 hypothetical protein compare
AO353_12250 -2.7 -11.8 Urocanate hydratase (EC 4.2.1.49) (from data) conserved
AO353_02250 -2.6 -4.0 chorismate synthase compare
AO353_10030 -2.6 -11.6 pyruvate carboxylase subunit A compare
AO353_11730 -2.6 -10.9 glutamate--cysteine ligase compare
AO353_08165 -2.6 -3.5 pyrroline-5-carboxylate reductase compare
AO353_13100 -2.6 -2.7 GTPase RsgA compare
AO353_10025 -2.5 -14.3 pyruvate carboxylase subunit B compare
AO353_07355 -2.5 -6.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_10035 -2.5 -9.5 LysR family transcriptional regulator compare
AO353_01375 -2.5 -7.1 phosphate acyltransferase compare
AO353_14400 -2.5 -4.0 Fis family transcriptional regulator compare
AO353_03580 -2.4 -3.7 ATP-dependent DNA helicase RuvB compare
AO353_20175 -2.4 -4.0 ATP-dependent Clp protease proteolytic subunit compare
AO353_07155 -2.4 -7.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_06495 -2.4 -6.4 gamma-glutamyl phosphate reductase compare
AO353_02975 -2.4 -4.2 aspartate kinase compare
AO353_07515 -2.4 -2.7 transporter compare
AO353_14115 -2.3 -7.0 gamma-glutamyl kinase compare
AO353_18540 -2.3 -3.0 pseudouridine synthase compare
AO353_27500 -2.2 -3.2 hypothetical protein compare
AO353_15250 -2.2 -3.9 cytochrome B compare
AO353_08045 -2.2 -13.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
AO353_16940 -2.2 -5.3 deoxycytidine triphosphate deaminase compare
AO353_13605 -2.1 -10.2 oxidoreductase compare
AO353_00495 -2.1 -3.1 DNA topoisomerase I compare
AO353_04355 -2.1 -3.0 homoserine dehydrogenase compare
AO353_12105 -2.1 -6.7 peptidase S41 compare
AO353_14775 -2.1 -6.7 hypothetical protein compare
AO353_13640 -2.0 -5.1 histidine kinase compare
AO353_10705 -2.0 -4.6 tryptophan synthase subunit alpha compare
AO353_07315 -2.0 -3.0 rRNA methyltransferase compare
AO353_16210 -2.0 -11.5 XRE family transcriptional regulator compare
AO353_20095 -2.0 -5.8 histidine kinase compare
AO353_13140 -2.0 -6.0 tRNA dimethylallyltransferase compare
AO353_02635 -2.0 -8.4 cobyrinic acid a,c-diamide synthase compare
AO353_06045 -1.9 -7.2 exodeoxyribonuclease V subunit beta compare
AO353_07520 -1.9 -10.8 8-amino-7-oxononanoate synthase compare
AO353_07505 -1.9 -7.3 dethiobiotin synthetase compare
AO353_02620 -1.9 -5.6 threonine-phosphate decarboxylase compare
AO353_19000 -1.8 -3.4 ABC transporter compare
AO353_12270 -1.8 -3.5 histidine ammonia-lyase compare
AO353_02595 -1.8 -3.3 cobalamin synthase compare
AO353_13620 -1.8 -9.0 precorrin-3B C17-methyltransferase compare
AO353_07510 -1.7 -9.1 malonyl-[acyl-carrier protein] O-methyltransferase BioC compare
AO353_21655 -1.7 -4.3 cobalamin biosynthesis protein CobW compare
AO353_16805 -1.7 -6.1 recombinase RecA compare
AO353_10945 -1.7 -2.8 cytochrome C compare
AO353_03415 -1.7 -5.4 glucokinase compare
AO353_02615 -1.7 -7.3 cobyric acid synthase compare
AO353_21660 -1.7 -9.5 cobalamin biosynthesis protein CobN compare
AO353_09250 -1.7 -3.4 exodeoxyribonuclease III compare
AO353_00660 -1.7 -2.9 transcriptional regulator compare
AO353_08885 -1.7 -11.4 polyphosphate kinase compare
AO353_05690 -1.7 -3.6 SsrA-binding protein compare
AO353_21665 -1.6 -4.6 magnesium chelatase compare
AO353_21625 -1.6 -1.8 Fe/S biogenesis protein NfuA compare
AO353_09890 -1.6 -5.2 phosphate ABC transporter ATP-binding protein compare
AO353_13225 -1.6 -3.4 50S ribosomal protein L9 compare
AO353_06050 -1.6 -6.3 exodeoxyribonuclease V subunit gamma compare
AO353_03615 -1.6 -3.1 cold-shock protein compare
AO353_08880 -1.6 -2.6 exopolyphosphatase compare
AO353_12510 -1.6 -8.7 cell division protein compare
AO353_05080 -1.6 -8.4 sulfate adenylyltransferase compare
AO353_02610 -1.6 -6.4 adenosylcobinamide kinase compare
AO353_27650 -1.6 -4.4 cell division protein FtsK compare
AO353_06155 -1.5 -6.3 copper-transporting ATPase compare
AO353_02060 -1.5 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_14420 -1.5 -3.7 molecular chaperone DnaK compare
AO353_05075 -1.5 -8.5 adenylylsulfate kinase compare
AO353_05625 -1.5 -1.9 transcription elongation factor GreA compare
AO353_04930 -1.5 -3.0 flavodoxin compare
AO353_04565 -1.5 -5.5 nucleoid-associated protein compare
AO353_02625 -1.5 -8.5 cobalamin biosynthesis protein CobD compare
AO353_19250 -1.5 -2.5 molybdenum cofactor guanylyltransferase compare
AO353_13600 -1.5 -3.5 precorrin-6Y C5,15-methyltransferase compare
AO353_05520 -1.4 -5.3 nicotinate-nucleotide pyrophosphorylase compare
AO353_13615 -1.4 -9.7 precorrin-2 C20-methyltransferase compare
AO353_18890 -1.4 -4.2 cytochrome C compare
AO353_12690 -1.4 -1.3 acyl carrier protein compare
AO353_02605 -1.3 -5.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
AO353_20370 -1.3 -3.3 MerR family transcriptional regulator compare
AO353_14935 -1.3 -2.8 aminopeptidase compare
AO353_18335 -1.3 -3.0 hypothetical protein compare
AO353_12420 -1.3 -2.9 predicted FeS cluster maintenance protein (from data) compare
AO353_14370 -1.3 -5.4 glucose-6-phosphate isomerase compare
AO353_13590 -1.3 -3.9 cobalt-precorrin-6X reductase compare
AO353_14395 -1.3 -3.7 poly(A) polymerase compare
AO353_06160 -1.3 -4.7 transcriptional regulator compare
AO353_09040 -1.3 -1.7 diaminopimelate epimerase compare
AO353_20815 -1.3 -3.1 LacI family transcriptional regulator compare
AO353_08350 -1.3 -6.0 hypothetical protein compare
AO353_19360 -1.3 -2.6 peroxiredoxin compare
AO353_03420 -1.2 -3.3 phosphogluconate dehydratase compare
AO353_06040 -1.2 -2.9 exodeoxyribonuclease V subunit alpha compare
AO353_12345 -1.2 -1.8 twin-arginine protein translocation system subunit TatC compare
AO353_14930 -1.2 -3.1 GntR family transcriptional regulator compare
AO353_12145 -1.2 -3.7 nitrogen regulation protein NR(I) compare
AO353_22810 -1.2 -1.5 hypothetical protein compare
AO353_10430 -1.2 -2.8 chromosome partitioning protein ParB compare
AO353_21615 -1.2 -7.4 methionine synthase compare
AO353_14220 -1.2 -1.7 ribosomal large subunit pseudouridine synthase D compare
AO353_10435 -1.2 -6.5 chromosome partitioning protein compare
AO353_00600 -1.2 -4.6 cytochrome C oxidase Cbb3 compare
AO353_05150 -1.2 -3.4 ABC transporter ATP-binding protein compare
AO353_16810 -1.2 -3.1 recombinase RecX compare
AO353_09030 -1.2 -1.8 iron donor protein CyaY compare
AO353_17640 -1.2 -2.2 serine peptidase compare
AO353_05145 -1.1 -4.6 ABC transporter permease compare
AO353_02720 -1.1 -3.5 cysteine synthase compare
AO353_08110 -1.1 -4.9 glutathione synthetase compare
AO353_03710 -1.1 -2.3 formyltetrahydrofolate deformylase compare
AO353_04365 -1.1 -4.3 recombinase XerD compare
AO353_15905 -1.1 -5.0 outer membrane protein assembly factor BamB compare
AO353_10780 -1.1 -1.5 DNA-binding protein compare
AO353_07075 -1.1 -3.1 elongation factor Tu compare
AO353_12255 -1.1 -6.6 sulfonate ABC transporter substrate-binding protein conserved
AO353_03525 -1.1 -6.1 quinolinate synthase A compare
AO353_00955 -1.1 -2.1 cytotoxic translational repressor of toxin-antitoxin stability system compare
AO353_16845 -1.1 -5.6 LysR family transcriptional regulator compare
AO353_14405 -1.1 -7.0 ATPase compare
AO353_20630 -1.1 -5.6 SAM-dependent methyltransferase compare
AO353_12090 -1.1 -1.2 imidazole glycerol phosphate synthase subunit HisF compare
AO353_15830 -1.1 -2.8 transcriptional regulator compare
AO353_19020 -1.1 -2.4 hypothetical protein compare
AO353_12265 -1.1 -3.2 hypothetical protein compare
AO353_17855 -1.1 -2.5 ribonuclease D compare
AO353_04650 -1.0 -2.3 molybdenum cofactor biosynthesis protein MoaE compare
AO353_13220 -1.0 -4.0 hypothetical protein compare
AO353_02195 -1.0 -3.5 spermidine synthase compare
AO353_09900 -1.0 -6.1 phosphate ABC transporter permease compare
AO353_12275 -1.0 -6.6 histidine permease (from data) conserved
AO353_12115 -1.0 -1.5 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_01220 -1.0 -2.1 hypothetical protein compare
AO353_08485 -1.0 -7.1 threonine dehydratase compare
AO353_14595 -1.0 -4.7 carbonate dehydratase compare
AO353_02715 -1.0 -3.2 23S rRNA methyltransferase compare
AO353_09320 -1.0 -5.6 ATP-dependent DNA helicase RecG compare
AO353_08080 -1.0 -4.2 chemotaxis protein compare
AO353_14085 -1.0 -1.9 hypothetical protein compare
AO353_09875 -1.0 -1.6 hypothetical protein compare
AO353_05010 -1.0 -1.4 HopJ type III effector protein compare
AO353_10715 -1.0 -3.0 LysR family transcriptional regulator compare
AO353_27725 -1.0 -2.3 GNAT family acetyltransferase compare
AO353_10520 -0.9 -3.6 GntR family transcriptional regulator compare
AO353_00260 -0.9 -1.5 hypothetical protein compare
AO353_13665 -0.9 -3.5 hypothetical protein compare
AO353_02005 -0.9 -1.1 hypothetical protein compare
AO353_20265 -0.9 -2.5 spore coat protein compare
AO353_05135 -0.9 -4.9 toluene tolerance protein compare
AO353_05130 -0.9 -0.9 anti-anti-sigma factor compare


Specific Phenotypes

For 7 genes in this experiment

For nitrogen source L-Histidine in Pseudomonas fluorescens FW300-N2E3

For nitrogen source L-Histidine across organisms